Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48499 * 109.46995 * 239.99907 * 3 2 1 5 5 H 1.48500 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47327 * 119.99947 * 3 2 1 7 7 C 1.38809 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47435 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84440 * 316.19599 * 11 10 9 13 13 C 1.53772 * 113.69247 * 87.46080 * 11 10 9 14 14 C 1.53777 * 87.08277 * 139.99228 * 13 11 10 15 15 H 1.08999 * 113.69735 * 220.00880 * 14 13 11 16 16 N 1.46500 * 113.61345 * 89.11702 * 14 13 11 17 17 C 1.34776 * 120.00287 * 107.50391 * 16 14 13 18 18 O 1.21281 * 119.99954 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00192 * 180.02562 * 17 16 14 20 20 O 1.42898 * 109.47167 * 180.02562 * 19 17 16 21 21 C 1.42899 * 114.00269 * 179.97438 * 20 19 17 22 22 C 1.50699 * 109.47176 * 180.02562 * 21 20 19 23 23 C 1.38822 * 120.75986 * 90.00037 * 22 21 20 24 24 C 1.38049 * 119.28823 * 179.69616 * 23 22 21 25 25 N 1.31964 * 120.83777 * 0.27970 * 24 23 22 26 26 C 1.32254 * 121.64527 * 359.97438 * 25 24 23 27 27 O 1.35669 * 119.68172 * 179.97438 * 26 25 24 28 28 C 1.38381 * 120.75387 * 270.24312 * 22 21 20 29 29 C 1.53781 * 113.61316 * 184.99958 * 11 10 9 30 30 H 0.97001 * 119.99948 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99607 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47017 * 59.99146 * 10 9 7 33 33 H 1.09000 * 109.46785 * 299.99904 * 10 9 7 34 34 H 1.09006 * 113.61461 * 25.44621 * 13 11 10 35 35 H 1.09001 * 113.61809 * 254.54577 * 13 11 10 36 36 H 0.97006 * 119.99720 * 287.50208 * 16 14 13 37 37 H 1.08993 * 109.47063 * 59.99790 * 19 17 16 38 38 H 1.09005 * 109.46992 * 300.00166 * 19 17 16 39 39 H 1.09004 * 109.47046 * 59.99990 * 21 20 19 40 40 H 1.09003 * 109.46788 * 300.00313 * 21 20 19 41 41 H 1.08002 * 120.35806 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.58258 * 180.29735 * 24 23 22 43 43 H 0.96700 * 113.99970 * 90.00604 * 27 26 25 44 44 H 1.07999 * 120.44979 * 0.02562 * 28 22 21 45 45 H 1.08996 * 113.61063 * 105.38631 * 29 11 10 46 46 H 1.08997 * 113.69140 * 334.49340 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.2380 -4.6701 0.6968 13 6 0.6143 -5.2492 -1.4053 14 6 0.7029 -6.7006 -0.9049 15 1 1.1197 -7.3918 -1.6374 16 7 -0.5395 -7.1907 -0.3030 17 6 -1.2977 -8.0905 -0.9603 18 8 -0.9511 -8.4947 -2.0499 19 6 -2.5760 -8.5942 -0.3413 20 8 -3.1950 -9.5324 -1.2236 21 6 -4.4211 -10.0743 -0.7286 22 6 -4.9828 -11.0466 -1.7337 23 6 -4.6446 -12.3921 -1.6857 24 6 -5.1817 -13.2571 -2.6179 25 7 -6.0045 -12.8191 -3.5520 26 6 -6.3463 -11.5441 -3.6334 27 8 -7.1950 -11.1371 -4.6104 28 6 -5.8435 -10.6175 -2.7287 29 6 1.7304 -6.2001 0.1240 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 1.3368 -5.0116 -2.1861 35 1 -0.3990 -4.9345 -1.6550 36 1 -0.8164 -6.8676 0.5688 37 1 -3.2514 -7.7562 -0.1695 38 1 -2.3527 -9.0813 0.6080 39 1 -5.1352 -9.2672 -0.5649 40 1 -4.2358 -10.5919 0.2127 41 1 -3.9719 -12.7590 -0.9246 42 1 -4.9257 -14.3057 -2.5820 43 1 -8.1283 -11.1692 -4.3593 44 1 -6.1244 -9.5770 -2.7982 45 1 1.6181 -6.6530 1.1090 46 1 2.7582 -6.2238 -0.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283051784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = -46.593880 kcal Electronic energy + Delta-G solvation = -26934.215761 eV Core-core repulsion = 22825.741565 eV Total energy + Delta-G solvation = -4108.474196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93646 -40.30612 -38.82869 -37.87007 -37.25465 -34.55807 -33.69685 -33.20972 -30.92076 -30.71254 -29.01160 -27.09682 -26.27733 -25.52751 -23.93597 -23.37544 -22.54850 -21.52345 -21.09301 -19.13389 -18.96620 -17.63219 -17.49160 -17.07826 -17.03770 -16.64801 -16.35651 -16.06390 -15.79175 -14.97678 -14.86868 -14.71960 -14.48555 -14.12367 -13.93196 -13.56850 -13.37963 -13.34433 -12.98834 -12.70688 -12.40538 -12.29326 -12.25649 -12.14710 -12.10285 -11.65380 -11.04290 -10.81993 -10.50613 -10.37795 -10.31917 -10.24685 -10.12305 -9.92909 -9.90463 -9.84240 -9.61665 -9.38546 -9.06741 -8.84719 -6.90811 -5.76419 -3.04568 0.53675 0.60610 2.43654 2.52857 3.05337 3.28045 3.44000 3.48283 3.49334 3.67722 4.13765 4.20007 4.47037 4.53633 4.57358 4.58070 4.63485 4.67385 4.70030 4.76961 4.83124 4.85647 5.02821 5.09140 5.12514 5.23207 5.38278 5.57760 5.69682 5.74799 5.83385 5.91776 5.98050 6.02492 6.08799 6.21479 6.28114 6.39970 6.46904 6.62708 6.77399 6.92321 7.03953 7.35676 7.45624 7.69564 8.07999 8.42937 9.53839 10.12909 10.47300 11.46508 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.001582 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.914959 B =17693.713380 C =18554.422367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.139 4.139 14 C 0.117 3.883 15 H 0.100 0.900 16 N -0.707 5.707 17 C 0.515 3.485 18 O -0.519 6.519 19 C 0.043 3.957 20 O -0.355 6.355 21 C 0.099 3.901 22 C -0.030 4.030 23 C -0.160 4.160 24 C 0.121 3.879 25 N -0.500 5.500 26 C 0.309 3.691 27 O -0.480 6.480 28 C -0.162 4.162 29 C -0.137 4.137 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.400 0.600 44 H 0.144 0.856 45 H 0.069 0.931 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 -27.172 2.500 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 H 0.106 0.894 13 C -0.177 4.177 14 C 0.012 3.988 15 H 0.118 0.882 16 N -0.360 5.360 17 C 0.300 3.700 18 O -0.393 6.393 19 C -0.037 4.037 20 O -0.273 6.273 21 C 0.022 3.978 22 C -0.038 4.038 23 C -0.180 4.180 24 C -0.035 4.035 25 N -0.220 5.220 26 C 0.130 3.870 27 O -0.287 6.287 28 C -0.183 4.183 29 C -0.176 4.176 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.258 0.742 44 H 0.162 0.838 45 H 0.088 0.912 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.229 -27.847 0.554 30.419 hybrid contribution -0.226 1.854 1.484 2.385 sum -12.455 -25.993 2.038 28.895 Atomic orbital electron populations 1.69649 1.05111 1.25707 1.57878 1.24735 0.95532 0.97688 1.03110 0.86261 0.78512 0.83531 0.77844 1.21281 1.21705 1.21293 1.19208 0.91020 0.84295 1.42588 0.91279 1.42334 1.05811 0.99985 1.89432 1.20641 0.93022 0.85215 0.97697 1.22758 0.99085 0.94239 0.97082 0.89435 1.23418 1.02549 0.94024 0.97747 1.21954 0.84150 0.96066 0.96647 0.88225 1.45551 1.23883 1.44061 1.22533 1.20139 0.84838 0.79223 0.85827 1.90751 1.71427 1.57041 1.20095 1.22251 0.93844 0.93974 0.93590 1.88097 1.36344 1.59351 1.43476 1.21373 0.86639 0.95143 0.94603 1.19851 0.94552 0.94055 0.95309 1.22114 1.00902 0.93467 1.01529 1.22537 0.91687 1.00319 0.88972 1.67171 1.15089 1.17070 1.22642 1.19139 0.92990 0.87615 0.87274 1.84819 1.20297 1.85778 1.37846 1.22066 1.00404 1.01599 0.94262 1.23314 0.98891 0.96547 0.98822 0.93520 0.78360 0.96405 0.96190 0.89046 0.91287 0.76355 0.89718 0.89924 0.91341 0.91293 0.84023 0.81894 0.74193 0.83845 0.91241 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.42 5.60 -59.91 -0.34 -18.75 16 10 C 0.16 3.16 6.10 -4.04 -0.02 3.14 16 11 C -0.11 -1.68 3.63 -89.81 -0.33 -2.01 16 12 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.14 -2.03 7.43 -25.93 -0.19 -2.22 16 14 C 0.12 1.43 4.32 -67.12 -0.29 1.14 16 15 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 16 N -0.71 -7.40 5.26 -53.02 -0.28 -7.68 16 17 C 0.51 6.22 7.91 -10.99 -0.09 6.13 16 18 O -0.52 -8.86 16.10 -14.35 -0.23 -9.09 16 19 C 0.04 0.35 6.42 36.01 0.23 0.58 16 20 O -0.35 -3.69 9.86 -55.14 -0.54 -4.24 16 21 C 0.10 0.65 6.11 36.01 0.22 0.87 16 22 C -0.03 -0.23 5.54 -104.35 -0.58 -0.81 16 23 C -0.16 -1.11 9.81 -39.43 -0.39 -1.50 16 24 C 0.12 0.92 11.18 -17.56 -0.20 0.72 16 25 N -0.50 -5.08 10.39 -13.33 -0.14 -5.22 16 26 C 0.31 2.96 7.74 -17.12 -0.13 2.83 16 27 O -0.48 -4.05 13.56 -18.71 -0.25 -4.30 16 28 C -0.16 -1.37 9.75 -39.28 -0.38 -1.76 16 29 C -0.14 -1.57 7.39 -25.92 -0.19 -1.77 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 34 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.40 3.11 8.70 -40.82 -0.36 2.76 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 40 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.40 1.16 9.06 45.56 0.41 1.57 16 44 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -38.71 395.64 -8.78 -47.49 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.07 Total: 8.00 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.58 Total: -2.07 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.03 Total: -59.18 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.03 Total: -17.63 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.71 -8.78 -47.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283051784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.894 kcal (2) G-P(sol) polarization free energy of solvation -38.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds