Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48499 * 109.46995 * 239.99907 * 3 2 1 5 5 H 1.48500 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47327 * 119.99947 * 3 2 1 7 7 C 1.38809 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47435 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84440 * 316.19599 * 11 10 9 13 13 C 1.53772 * 113.69247 * 87.46080 * 11 10 9 14 14 C 1.53777 * 87.08277 * 139.99228 * 13 11 10 15 15 H 1.08999 * 113.69735 * 220.00880 * 14 13 11 16 16 N 1.46500 * 113.61345 * 89.11702 * 14 13 11 17 17 C 1.34776 * 120.00287 * 107.50391 * 16 14 13 18 18 O 1.21281 * 119.99954 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00192 * 180.02562 * 17 16 14 20 20 O 1.42898 * 109.47167 * 180.02562 * 19 17 16 21 21 C 1.42899 * 114.00269 * 179.97438 * 20 19 17 22 22 C 1.50699 * 109.47176 * 180.02562 * 21 20 19 23 23 C 1.38822 * 120.75986 * 90.00037 * 22 21 20 24 24 C 1.38049 * 119.28823 * 179.69616 * 23 22 21 25 25 N 1.31964 * 120.83777 * 0.27970 * 24 23 22 26 26 C 1.32254 * 121.64527 * 359.97438 * 25 24 23 27 27 O 1.35669 * 119.68172 * 179.97438 * 26 25 24 28 28 C 1.38381 * 120.75387 * 270.24312 * 22 21 20 29 29 C 1.53781 * 113.61316 * 184.99958 * 11 10 9 30 30 H 0.97001 * 119.99948 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99607 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47017 * 59.99146 * 10 9 7 33 33 H 1.09000 * 109.46785 * 299.99904 * 10 9 7 34 34 H 1.09006 * 113.61461 * 25.44621 * 13 11 10 35 35 H 1.09001 * 113.61809 * 254.54577 * 13 11 10 36 36 H 0.97006 * 119.99720 * 287.50208 * 16 14 13 37 37 H 1.08993 * 109.47063 * 59.99790 * 19 17 16 38 38 H 1.09005 * 109.46992 * 300.00166 * 19 17 16 39 39 H 1.09004 * 109.47046 * 59.99990 * 21 20 19 40 40 H 1.09003 * 109.46788 * 300.00313 * 21 20 19 41 41 H 1.08002 * 120.35806 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.58258 * 180.29735 * 24 23 22 43 43 H 0.96700 * 113.99970 * 90.00604 * 27 26 25 44 44 H 1.07999 * 120.44979 * 0.02562 * 28 22 21 45 45 H 1.08996 * 113.61063 * 105.38631 * 29 11 10 46 46 H 1.08997 * 113.69140 * 334.49340 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.2380 -4.6701 0.6968 13 6 0.6143 -5.2492 -1.4053 14 6 0.7029 -6.7006 -0.9049 15 1 1.1197 -7.3918 -1.6374 16 7 -0.5395 -7.1907 -0.3030 17 6 -1.2977 -8.0905 -0.9603 18 8 -0.9511 -8.4947 -2.0499 19 6 -2.5760 -8.5942 -0.3413 20 8 -3.1950 -9.5324 -1.2236 21 6 -4.4211 -10.0743 -0.7286 22 6 -4.9828 -11.0466 -1.7337 23 6 -4.6446 -12.3921 -1.6857 24 6 -5.1817 -13.2571 -2.6179 25 7 -6.0045 -12.8191 -3.5520 26 6 -6.3463 -11.5441 -3.6334 27 8 -7.1950 -11.1371 -4.6104 28 6 -5.8435 -10.6175 -2.7287 29 6 1.7304 -6.2001 0.1240 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 1.3368 -5.0116 -2.1861 35 1 -0.3990 -4.9345 -1.6550 36 1 -0.8164 -6.8676 0.5688 37 1 -3.2514 -7.7562 -0.1695 38 1 -2.3527 -9.0813 0.6080 39 1 -5.1352 -9.2672 -0.5649 40 1 -4.2358 -10.5919 0.2127 41 1 -3.9719 -12.7590 -0.9246 42 1 -4.9257 -14.3057 -2.5820 43 1 -8.1283 -11.1692 -4.3593 44 1 -6.1244 -9.5770 -2.7982 45 1 1.6181 -6.6530 1.1090 46 1 2.7582 -6.2238 -0.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283051784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = -78.496712 kcal Electronic energy + Delta-G solvation = -26935.599172 eV Core-core repulsion = 22825.741565 eV Total energy + Delta-G solvation = -4109.857607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51627 -41.27671 -39.74233 -38.64572 -37.89685 -36.32559 -34.49413 -34.24209 -32.80961 -31.27081 -29.79618 -28.34974 -27.18033 -26.62045 -25.14398 -24.49906 -23.09983 -22.98440 -22.01077 -20.31649 -19.56837 -19.05996 -18.34096 -18.07863 -17.76229 -17.28540 -16.98926 -16.87228 -16.64271 -16.52654 -15.88282 -15.74906 -15.51537 -15.24728 -15.13670 -14.95012 -14.42744 -14.17185 -14.11092 -13.70327 -13.49793 -13.32516 -13.10616 -12.90607 -12.86557 -12.75455 -12.67977 -12.64621 -12.22771 -11.91977 -11.72923 -11.34516 -11.14293 -11.02415 -10.84959 -10.76817 -10.76011 -10.51259 -10.05390 -9.94662 -8.96919 -7.94641 -5.22604 -0.02499 0.03859 1.47330 1.50316 1.54844 1.56370 1.80791 2.51925 2.56681 2.68862 3.10263 3.38261 3.58859 3.60236 3.62837 3.69617 3.81607 3.94853 3.96196 4.04805 4.05582 4.21714 4.24742 4.34275 4.35586 4.43687 4.57853 4.58220 4.73487 4.77516 4.84568 4.85803 4.91471 4.93417 5.00235 5.16114 5.23137 5.28366 5.37168 5.49609 5.54977 5.67722 5.97930 6.28279 6.55711 6.58812 6.89884 7.23320 7.34383 8.12720 8.35023 9.28658 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.001582 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.914959 B =17693.713380 C =18554.422367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.158 3.842 11 C -0.109 4.109 12 H 0.091 0.909 13 C -0.145 4.145 14 C 0.126 3.874 15 H 0.089 0.911 16 N -0.696 5.696 17 C 0.509 3.491 18 O -0.578 6.578 19 C 0.047 3.953 20 O -0.393 6.393 21 C 0.098 3.902 22 C -0.041 4.041 23 C -0.159 4.159 24 C 0.113 3.887 25 N -0.532 5.532 26 C 0.290 3.710 27 O -0.497 6.497 28 C -0.174 4.174 29 C -0.114 4.114 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.418 0.582 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.419 0.581 44 H 0.150 0.850 45 H 0.097 0.903 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -28.132 4.662 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.127 4.127 12 H 0.109 0.891 13 C -0.184 4.184 14 C 0.020 3.980 15 H 0.107 0.893 16 N -0.349 5.349 17 C 0.296 3.704 18 O -0.457 6.457 19 C -0.032 4.032 20 O -0.312 6.312 21 C 0.022 3.978 22 C -0.049 4.049 23 C -0.178 4.178 24 C -0.044 4.044 25 N -0.252 5.252 26 C 0.112 3.888 27 O -0.307 6.307 28 C -0.195 4.195 29 C -0.153 4.153 30 H 0.060 0.940 31 H 0.205 0.795 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.187 0.813 42 H 0.207 0.793 43 H 0.280 0.720 44 H 0.168 0.832 45 H 0.115 0.885 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.615 -28.823 2.764 31.197 hybrid contribution -0.401 2.100 0.795 2.281 sum -12.016 -26.722 3.558 29.515 Atomic orbital electron populations 1.69805 1.06557 1.26084 1.59544 1.25559 0.96426 1.01085 1.03777 0.85217 0.77215 0.79186 0.78179 1.20639 1.22140 1.20204 1.19636 0.91526 0.85618 1.41219 0.90785 1.42561 1.05592 1.01224 1.89322 1.20840 0.93867 0.84642 0.97443 1.22682 0.98588 0.94217 0.97261 0.89115 1.23430 1.01245 0.96199 0.97549 1.21733 0.85263 0.94160 0.96808 0.89265 1.45465 1.23072 1.43402 1.22957 1.20997 0.85846 0.78460 0.85075 1.90726 1.73033 1.59154 1.22758 1.22372 0.91888 0.94934 0.93958 1.88038 1.37876 1.60083 1.45242 1.21578 0.85662 0.95585 0.94979 1.20195 0.94281 0.94986 0.95439 1.22448 1.00589 0.93085 1.01688 1.23066 0.91019 1.01783 0.88486 1.67181 1.16459 1.17567 1.24040 1.19360 0.93685 0.87939 0.87847 1.84757 1.21823 1.85804 1.38286 1.22217 1.00919 1.01787 0.94587 1.23212 0.98734 0.93356 0.99960 0.94048 0.79499 0.95905 0.96491 0.90076 0.93008 0.74417 0.87257 0.85928 0.89714 0.88282 0.81348 0.79346 0.72007 0.83217 0.88498 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -37.52 5.60 -343.46 -1.92 -39.45 16 10 C 0.16 6.06 6.10 86.38 0.53 6.59 16 11 C -0.11 -3.09 3.63 -10.27 -0.04 -3.13 16 12 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.15 -4.23 7.43 31.12 0.23 -4.00 16 14 C 0.13 2.93 4.32 45.52 0.20 3.12 16 15 H 0.09 2.34 7.46 -2.39 -0.02 2.32 16 16 N -0.70 -13.10 5.26 -440.04 -2.32 -15.41 16 17 C 0.51 11.53 7.91 87.66 0.69 12.23 16 18 O -0.58 -19.81 16.10 16.00 0.26 -19.55 16 19 C 0.05 0.62 6.42 71.24 0.46 1.08 16 20 O -0.39 -7.41 9.86 -129.94 -1.28 -8.69 16 21 C 0.10 1.01 6.11 71.24 0.44 1.45 16 22 C -0.04 -0.59 5.54 -19.69 -0.11 -0.70 16 23 C -0.16 -1.93 9.81 22.36 0.22 -1.71 16 24 C 0.11 1.61 11.18 84.63 0.95 2.56 16 25 N -0.53 -10.91 10.39 -308.95 -3.21 -14.12 16 26 C 0.29 5.71 7.74 84.79 0.66 6.37 16 27 O -0.50 -8.75 13.56 -89.86 -1.22 -9.97 16 28 C -0.17 -2.94 9.75 22.47 0.22 -2.72 16 29 C -0.11 -2.31 7.39 31.12 0.23 -2.08 16 30 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.37 19.95 7.67 -92.71 -0.71 19.23 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.02 0.67 7.85 -2.39 -0.02 0.65 16 34 H 0.08 2.50 7.90 -2.38 -0.02 2.48 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.42 5.15 8.70 -92.70 -0.81 4.34 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.08 0.57 8.10 -2.39 -0.02 0.56 16 40 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.42 2.71 9.06 -74.06 -0.67 2.04 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -86.12 395.64 -2.57 -88.69 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -1.16 Total: 27.23 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.97 Total: 2.05 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.17 Total: -127.90 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -2.24 Total: -38.21 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -86.12 -2.57 -88.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283051784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.197 kcal (2) G-P(sol) polarization free energy of solvation -86.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds