Wall clock time and date at job start Tue Mar 31 2020 18:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99978 * 3 2 1 5 5 H 1.48508 * 109.47142 * 29.99701 * 3 2 1 6 6 H 1.48495 * 109.47467 * 150.00065 * 3 2 1 7 7 C 1.38810 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00268 * 182.78909 * 7 2 1 9 9 N 1.36934 * 119.99965 * 2.79733 * 7 2 1 10 10 C 1.46501 * 119.99919 * 314.42748 * 9 7 2 11 11 C 1.52997 * 109.47345 * 264.22469 * 10 9 7 12 12 O 1.42898 * 109.47058 * 64.99551 * 11 10 9 13 13 C 1.46504 * 120.00201 * 134.42813 * 9 7 2 14 14 C 1.53039 * 109.46155 * 59.99995 * 13 9 7 15 15 C 1.53187 * 109.31370 * 178.63041 * 14 13 9 16 16 N 1.46925 * 108.77635 * 54.63517 * 15 14 13 17 17 C 1.34772 * 120.63176 * 126.37394 * 16 15 14 18 18 O 1.21522 * 120.00073 * 0.60434 * 17 16 15 19 19 C 1.48152 * 119.99960 * 180.61375 * 17 16 15 20 20 C 1.39170 * 119.69023 * 158.26086 * 19 17 16 21 21 C 1.38744 * 119.18496 * 180.25235 * 20 19 17 22 22 C 1.38365 * 118.55713 * 359.49672 * 21 20 19 23 23 C 1.39244 * 119.30741 * 0.47998 * 22 21 20 24 24 O 1.35672 * 119.61478 * 179.74440 * 23 22 21 25 25 N 1.31925 * 120.77000 * 359.76487 * 23 22 21 26 26 C 1.46927 * 118.73529 * 306.64177 * 16 15 14 27 27 C 1.52757 * 109.00770 * 53.31210 * 26 16 15 28 28 H 0.97001 * 119.99761 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47077 * 24.22863 * 10 9 7 30 30 H 1.09003 * 109.47024 * 144.22318 * 10 9 7 31 31 H 1.08995 * 109.47457 * 184.99935 * 11 10 9 32 32 H 1.09009 * 109.47074 * 305.00064 * 11 10 9 33 33 H 0.96697 * 113.99841 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.45872 * 179.97438 * 13 9 7 35 35 H 1.09002 * 109.49462 * 58.67218 * 14 13 9 36 36 H 1.09001 * 109.51903 * 298.59641 * 14 13 9 37 37 H 1.09001 * 109.58528 * 294.84426 * 15 14 13 38 38 H 1.08996 * 109.70315 * 174.49306 * 15 14 13 39 39 H 1.08000 * 120.40924 * 359.96815 * 20 19 17 40 40 H 1.07998 * 120.71733 * 179.74693 * 21 20 19 41 41 H 1.08009 * 120.34606 * 180.22342 * 22 21 20 42 42 H 0.96700 * 114.00205 * 270.01765 * 24 23 22 43 43 H 1.09006 * 109.58139 * 173.14971 * 26 16 15 44 44 H 1.09002 * 109.58752 * 293.56811 * 26 16 15 45 45 H 1.09002 * 109.56455 * 185.54945 * 27 26 16 46 46 H 1.08999 * 109.35749 * 65.50145 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0893 -1.2027 0.0460 9 7 1.3268 -2.3873 -0.0568 10 6 0.1543 -2.5987 0.7956 11 6 0.5741 -3.3421 2.0653 12 8 1.4545 -2.5172 2.8311 13 6 1.7682 -3.4440 -0.9706 14 6 3.1986 -3.8585 -0.6179 15 6 3.6443 -4.9869 -1.5531 16 7 3.4695 -4.5455 -2.9436 17 6 4.4953 -4.6013 -3.8158 18 8 5.5746 -5.0299 -3.4579 19 6 4.3073 -4.1398 -5.2110 20 6 5.4135 -3.7676 -5.9690 21 6 5.2248 -3.3320 -7.2727 22 6 3.9371 -3.2935 -7.7774 23 6 2.8747 -3.6807 -6.9648 24 8 1.6089 -3.6404 -7.4516 25 7 3.0845 -4.0857 -5.7269 26 6 2.1567 -4.0365 -3.3634 27 6 1.7261 -2.9239 -2.4093 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2777 -1.6349 1.0649 30 1 -0.5853 -3.1903 0.2560 31 1 -0.3101 -3.5777 2.6575 32 1 1.0859 -4.2653 1.7934 33 1 1.7612 -2.9256 3.6522 34 1 1.1068 -4.3052 -0.8763 35 1 3.2322 -4.2068 0.4145 36 1 3.8649 -3.0039 -0.7354 37 1 3.0363 -5.8733 -1.3719 38 1 4.6936 -5.2205 -1.3731 39 1 6.4062 -3.8128 -5.5461 40 1 6.0652 -3.0333 -7.8817 41 1 3.7574 -2.9627 -8.7898 42 1 1.1583 -2.7973 -7.3064 43 1 2.2253 -3.6408 -4.3768 44 1 1.4250 -4.8438 -3.3329 45 1 0.7118 -2.6071 -2.6520 46 1 2.4060 -2.0780 -2.5104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316811065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:12 Heat of formation + Delta-G solvation = -40.040694 kcal Electronic energy + Delta-G solvation = -30109.642829 eV Core-core repulsion = 26001.452800 eV Total energy + Delta-G solvation = -4108.190029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08375 -39.45638 -37.64307 -37.03262 -36.08671 -34.60498 -33.16161 -31.86280 -30.87903 -30.33079 -30.13433 -27.65181 -25.55193 -24.28162 -23.65388 -22.95616 -22.50800 -20.93995 -20.06653 -19.35423 -18.51213 -17.62928 -16.71219 -16.52515 -16.33121 -16.12878 -15.71388 -15.46311 -14.92430 -14.83746 -14.38229 -14.05574 -13.73020 -13.56786 -13.37440 -13.21320 -12.98956 -12.77482 -12.49154 -12.39543 -12.18618 -11.94813 -11.76030 -11.39744 -11.10266 -10.83024 -10.79034 -10.68666 -10.47277 -10.34825 -10.17058 -9.95990 -9.93857 -9.73515 -9.54115 -9.23503 -9.04863 -8.83402 -8.36044 -8.31324 -6.34203 -5.63744 -3.35781 0.42942 0.83095 2.60742 3.02929 3.40331 3.41225 3.47160 3.50342 3.54942 4.25074 4.51509 4.54670 4.67493 4.75519 5.02180 5.19950 5.24164 5.38685 5.43729 5.51065 5.61300 5.67008 5.71798 5.79752 5.86963 5.94313 6.07034 6.12499 6.13826 6.20787 6.35434 6.45240 6.55724 6.58100 6.73525 6.76706 6.92762 6.94047 7.18159 7.19571 7.26605 7.43531 7.64630 7.82766 8.01081 8.24364 8.53900 8.77430 9.34546 9.91126 10.51231 11.33829 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003717 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.231941 B = 7530.734839 C = 8303.660287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.019 3.981 3 Si 0.895 3.105 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.053 0.947 9 N -0.574 5.574 10 C 0.136 3.864 11 C 0.058 3.942 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.138 4.138 15 C 0.111 3.889 16 N -0.577 5.577 17 C 0.566 3.434 18 O -0.544 6.544 19 C 0.114 3.886 20 C -0.124 4.124 21 C -0.064 4.064 22 C -0.168 4.168 23 C 0.306 3.694 24 O -0.480 6.480 25 N -0.464 5.464 26 C 0.076 3.924 27 C -0.134 4.134 28 H 0.252 0.748 29 H 0.120 0.880 30 H 0.031 0.969 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.348 0.652 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.405 0.595 43 H 0.132 0.868 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -7.795 -12.253 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.725 3.275 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.359 4.359 8 H 0.071 0.929 9 N -0.293 5.293 10 C 0.010 3.990 11 C -0.022 4.022 12 O -0.345 6.345 13 C 0.070 3.930 14 C -0.178 4.178 15 C -0.012 4.012 16 N -0.307 5.307 17 C 0.352 3.648 18 O -0.423 6.423 19 C -0.024 4.024 20 C -0.145 4.145 21 C -0.090 4.090 22 C -0.190 4.190 23 C 0.125 3.875 24 O -0.288 6.288 25 N -0.186 5.186 26 C -0.047 4.047 27 C -0.174 4.174 28 H 0.063 0.937 29 H 0.137 0.863 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.190 0.810 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.263 0.737 43 H 0.148 0.852 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.340 -8.258 -12.234 15.385 hybrid contribution 0.821 1.175 0.211 1.449 sum 5.161 -7.083 -12.022 14.877 Atomic orbital electron populations 1.69655 1.05448 1.25103 1.54137 1.25388 0.95240 0.98113 0.99246 0.86416 0.79549 0.84151 0.77408 1.21588 1.21768 1.20446 1.18764 0.90014 0.82756 1.44318 0.92943 1.43645 1.31748 1.13127 1.40785 1.21282 0.88984 1.01980 0.86744 1.23138 0.90477 0.93332 0.95251 1.86854 1.67029 1.44481 1.36125 1.20345 0.92260 0.91143 0.89291 1.22358 1.00288 0.97363 0.97777 1.21778 1.02313 0.97322 0.79753 1.48034 1.11582 1.60495 1.10556 1.17839 0.84052 0.79025 0.83881 1.90761 1.25489 1.47918 1.78084 1.21002 0.88084 0.98166 0.95106 1.22110 1.00477 0.97687 0.94239 1.21537 0.97138 0.95516 0.94803 1.22315 0.93039 1.01556 1.02048 1.19324 0.85781 0.94765 0.87590 1.84786 1.24257 1.41651 1.78064 1.67278 1.23677 1.15065 1.12598 1.22907 0.82046 0.97299 1.02436 1.22238 1.01838 0.97437 0.95928 0.93733 0.86296 0.95081 0.96466 0.96345 0.80987 0.93643 0.91515 0.91356 0.91846 0.89684 0.83099 0.83517 0.83727 0.73698 0.85195 0.92174 0.91189 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 10.84 55.49 0.60 -24.83 16 2 C 0.02 0.51 5.35 -17.43 -0.09 0.42 16 3 Si 0.89 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.10 7.97 -15.06 -0.12 -6.22 16 8 H 0.05 1.46 6.95 -52.49 -0.36 1.10 16 9 N -0.57 -13.70 2.32 -165.62 -0.38 -14.08 16 10 C 0.14 3.17 5.53 -4.04 -0.02 3.15 16 11 C 0.06 1.16 7.38 37.16 0.27 1.44 16 12 O -0.54 -11.57 13.41 -35.23 -0.47 -12.04 16 13 C 0.18 3.56 2.60 -67.89 -0.18 3.38 16 14 C -0.14 -2.56 5.29 -26.61 -0.14 -2.70 16 15 C 0.11 1.80 6.43 -3.71 -0.02 1.78 16 16 N -0.58 -9.59 2.98 -174.03 -0.52 -10.11 16 17 C 0.57 9.50 7.62 -12.19 -0.09 9.41 16 18 O -0.54 -10.14 15.94 5.35 0.09 -10.06 16 19 C 0.11 1.62 6.46 -83.02 -0.54 1.08 16 20 C -0.12 -1.41 9.62 -39.05 -0.38 -1.79 16 21 C -0.06 -0.54 10.16 -39.35 -0.40 -0.94 16 22 C -0.17 -1.45 10.04 -39.16 -0.39 -1.84 16 23 C 0.31 3.40 7.74 -17.14 -0.13 3.27 16 24 O -0.48 -4.63 13.56 -18.72 -0.25 -4.88 16 25 N -0.46 -6.33 6.38 -9.87 -0.06 -6.39 16 26 C 0.08 1.22 5.97 -3.93 -0.02 1.19 16 27 C -0.13 -2.58 5.29 -26.84 -0.14 -2.72 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.12 3.22 5.32 -51.93 -0.28 2.95 16 30 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.35 5.41 9.12 45.56 0.42 5.83 16 34 H 0.05 0.87 7.87 -51.93 -0.41 0.46 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.43 7.14 -51.93 -0.37 1.06 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 39 H 0.15 1.60 7.79 -52.49 -0.41 1.19 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.40 2.10 9.06 45.56 0.41 2.52 16 43 H 0.13 2.02 3.96 -79.90 -0.32 1.71 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.07 1.44 7.71 -51.93 -0.40 1.04 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -33.86 373.00 -7.82 -41.69 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.02 Total: 9.22 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -2.40 Total: 8.91 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.36 Total: -55.40 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.64 Total: -26.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.86 -7.82 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316811065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.646 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds