Wall clock time and date at job start Tue Mar 31 2020 18:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99978 * 3 2 1 5 5 H 1.48508 * 109.47142 * 29.99701 * 3 2 1 6 6 H 1.48495 * 109.47467 * 150.00065 * 3 2 1 7 7 C 1.38810 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00268 * 182.78909 * 7 2 1 9 9 N 1.36934 * 119.99965 * 2.79733 * 7 2 1 10 10 C 1.46501 * 119.99919 * 314.42748 * 9 7 2 11 11 C 1.52997 * 109.47345 * 264.22469 * 10 9 7 12 12 O 1.42898 * 109.47058 * 64.99551 * 11 10 9 13 13 C 1.46504 * 120.00201 * 134.42813 * 9 7 2 14 14 C 1.53039 * 109.46155 * 59.99995 * 13 9 7 15 15 C 1.53187 * 109.31370 * 178.63041 * 14 13 9 16 16 N 1.46925 * 108.77635 * 54.63517 * 15 14 13 17 17 C 1.34772 * 120.63176 * 126.37394 * 16 15 14 18 18 O 1.21522 * 120.00073 * 0.60434 * 17 16 15 19 19 C 1.48152 * 119.99960 * 180.61375 * 17 16 15 20 20 C 1.39170 * 119.69023 * 158.26086 * 19 17 16 21 21 C 1.38744 * 119.18496 * 180.25235 * 20 19 17 22 22 C 1.38365 * 118.55713 * 359.49672 * 21 20 19 23 23 C 1.39244 * 119.30741 * 0.47998 * 22 21 20 24 24 O 1.35672 * 119.61478 * 179.74440 * 23 22 21 25 25 N 1.31925 * 120.77000 * 359.76487 * 23 22 21 26 26 C 1.46927 * 118.73529 * 306.64177 * 16 15 14 27 27 C 1.52757 * 109.00770 * 53.31210 * 26 16 15 28 28 H 0.97001 * 119.99761 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47077 * 24.22863 * 10 9 7 30 30 H 1.09003 * 109.47024 * 144.22318 * 10 9 7 31 31 H 1.08995 * 109.47457 * 184.99935 * 11 10 9 32 32 H 1.09009 * 109.47074 * 305.00064 * 11 10 9 33 33 H 0.96697 * 113.99841 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.45872 * 179.97438 * 13 9 7 35 35 H 1.09002 * 109.49462 * 58.67218 * 14 13 9 36 36 H 1.09001 * 109.51903 * 298.59641 * 14 13 9 37 37 H 1.09001 * 109.58528 * 294.84426 * 15 14 13 38 38 H 1.08996 * 109.70315 * 174.49306 * 15 14 13 39 39 H 1.08000 * 120.40924 * 359.96815 * 20 19 17 40 40 H 1.07998 * 120.71733 * 179.74693 * 21 20 19 41 41 H 1.08009 * 120.34606 * 180.22342 * 22 21 20 42 42 H 0.96700 * 114.00205 * 270.01765 * 24 23 22 43 43 H 1.09006 * 109.58139 * 173.14971 * 26 16 15 44 44 H 1.09002 * 109.58752 * 293.56811 * 26 16 15 45 45 H 1.09002 * 109.56455 * 185.54945 * 27 26 16 46 46 H 1.08999 * 109.35749 * 65.50145 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0893 -1.2027 0.0460 9 7 1.3268 -2.3873 -0.0568 10 6 0.1543 -2.5987 0.7956 11 6 0.5741 -3.3421 2.0653 12 8 1.4545 -2.5172 2.8311 13 6 1.7682 -3.4440 -0.9706 14 6 3.1986 -3.8585 -0.6179 15 6 3.6443 -4.9869 -1.5531 16 7 3.4695 -4.5455 -2.9436 17 6 4.4953 -4.6013 -3.8158 18 8 5.5746 -5.0299 -3.4579 19 6 4.3073 -4.1398 -5.2110 20 6 5.4135 -3.7676 -5.9690 21 6 5.2248 -3.3320 -7.2727 22 6 3.9371 -3.2935 -7.7774 23 6 2.8747 -3.6807 -6.9648 24 8 1.6089 -3.6404 -7.4516 25 7 3.0845 -4.0857 -5.7269 26 6 2.1567 -4.0365 -3.3634 27 6 1.7261 -2.9239 -2.4093 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2777 -1.6349 1.0649 30 1 -0.5853 -3.1903 0.2560 31 1 -0.3101 -3.5777 2.6575 32 1 1.0859 -4.2653 1.7934 33 1 1.7612 -2.9256 3.6522 34 1 1.1068 -4.3052 -0.8763 35 1 3.2322 -4.2068 0.4145 36 1 3.8649 -3.0039 -0.7354 37 1 3.0363 -5.8733 -1.3719 38 1 4.6936 -5.2205 -1.3731 39 1 6.4062 -3.8128 -5.5461 40 1 6.0652 -3.0333 -7.8817 41 1 3.7574 -2.9627 -8.7898 42 1 1.1583 -2.7973 -7.3064 43 1 2.2253 -3.6408 -4.3768 44 1 1.4250 -4.8438 -3.3329 45 1 0.7118 -2.6071 -2.6520 46 1 2.4060 -2.0780 -2.5104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316811065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:11 Heat of formation + Delta-G solvation = -67.237175 kcal Electronic energy + Delta-G solvation = -30110.822157 eV Core-core repulsion = 26001.452800 eV Total energy + Delta-G solvation = -4109.369357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06243 -40.61332 -39.11000 -37.91819 -37.64066 -36.26188 -34.22658 -33.49217 -32.13089 -31.93858 -31.27825 -29.40884 -26.93521 -25.81393 -24.55222 -24.39970 -23.82226 -22.36160 -21.71109 -20.71242 -19.44038 -18.86095 -18.14935 -18.03785 -17.57591 -17.06921 -16.93793 -16.74416 -16.57340 -16.09142 -15.97602 -15.52307 -15.25659 -14.81719 -14.69079 -14.58714 -14.39379 -14.09286 -13.88784 -13.64633 -13.32065 -13.20296 -13.08725 -12.94799 -12.76001 -12.65882 -12.61961 -12.36832 -12.07917 -11.83282 -11.58957 -11.56066 -11.49973 -11.23211 -10.98706 -10.60970 -10.43532 -10.11099 -9.94878 -9.64560 -8.30507 -7.67184 -5.43501 -0.43851 0.06855 1.42076 1.44390 1.51936 1.54494 1.87352 2.51677 2.54229 2.62403 3.27373 3.38285 3.59854 3.74815 3.86008 3.91085 3.99129 4.04013 4.20320 4.21961 4.32314 4.41834 4.45654 4.51348 4.58370 4.67901 4.72450 4.80310 4.91809 4.93310 4.97900 5.04889 5.05905 5.16653 5.19559 5.22189 5.39942 5.50795 5.59844 5.69888 5.74095 6.01318 6.29365 6.48554 6.65567 6.71520 6.99957 7.22790 7.33762 7.97610 8.50307 9.24108 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003717 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.231941 B = 7530.734839 C = 8303.660287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.028 4.028 3 Si 0.943 3.057 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.036 0.964 9 N -0.586 5.586 10 C 0.131 3.869 11 C 0.067 3.933 12 O -0.576 6.576 13 C 0.174 3.826 14 C -0.122 4.122 15 C 0.117 3.883 16 N -0.584 5.584 17 C 0.561 3.439 18 O -0.572 6.572 19 C 0.082 3.918 20 C -0.128 4.128 21 C -0.051 4.051 22 C -0.151 4.151 23 C 0.295 3.705 24 O -0.487 6.487 25 N -0.491 5.491 26 C 0.088 3.912 27 C -0.120 4.120 28 H 0.247 0.753 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.373 0.627 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.422 0.578 43 H 0.142 0.858 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -8.599 -14.276 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.224 4.224 3 Si 0.773 3.227 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.053 0.947 9 N -0.306 5.306 10 C 0.005 3.995 11 C -0.013 4.013 12 O -0.381 6.381 13 C 0.067 3.933 14 C -0.163 4.163 15 C -0.006 4.006 16 N -0.313 5.313 17 C 0.349 3.651 18 O -0.452 6.452 19 C -0.054 4.054 20 C -0.149 4.149 21 C -0.076 4.076 22 C -0.172 4.172 23 C 0.114 3.886 24 O -0.298 6.298 25 N -0.214 5.214 26 C -0.034 4.034 27 C -0.161 4.161 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.171 0.829 40 H 0.206 0.794 41 H 0.199 0.801 42 H 0.283 0.717 43 H 0.159 0.841 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.904 -9.074 -14.247 17.589 hybrid contribution 0.644 1.401 0.775 1.726 sum 5.548 -7.672 -13.472 16.467 Atomic orbital electron populations 1.69824 1.06195 1.25058 1.55535 1.25905 0.95928 1.00451 1.00129 0.85650 0.78338 0.81388 0.77336 1.21148 1.21937 1.20637 1.18719 0.89381 0.84100 1.43093 0.94679 1.43792 1.31629 1.13195 1.42001 1.21191 0.89048 1.00754 0.88532 1.22930 0.91529 0.92835 0.94017 1.86771 1.67498 1.45952 1.37835 1.20509 0.93216 0.90601 0.88965 1.22143 0.98534 0.97018 0.98556 1.21707 1.02552 0.96952 0.79358 1.48115 1.11834 1.60680 1.10691 1.18327 0.83431 0.78255 0.85116 1.90724 1.26311 1.49122 1.79031 1.20696 0.89424 1.01119 0.94186 1.22287 0.99704 0.97512 0.95439 1.21998 0.98470 0.93541 0.93583 1.22708 0.92143 0.99275 1.03037 1.19633 0.86957 0.94760 0.87258 1.84755 1.24056 1.43252 1.77709 1.66950 1.23678 1.16367 1.14385 1.22841 0.82074 0.96464 1.02034 1.22047 1.00140 0.97466 0.96403 0.94306 0.89994 0.94142 0.93874 0.94708 0.78099 0.91976 0.91392 0.94533 0.89491 0.89928 0.82948 0.79352 0.80137 0.71684 0.84139 0.90926 0.92604 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.41 10.84 21.65 0.23 -53.17 16 2 C -0.03 -1.59 5.35 84.86 0.45 -1.14 16 3 Si 0.94 46.15 29.55 68.60 2.03 48.18 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.22 -12.17 7.97 84.03 0.67 -11.50 16 8 H 0.04 2.04 6.95 -2.91 -0.02 2.02 16 9 N -0.59 -28.39 2.32 -677.89 -1.57 -29.96 16 10 C 0.13 6.10 5.53 86.38 0.48 6.58 16 11 C 0.07 2.57 7.38 71.98 0.53 3.10 16 12 O -0.58 -24.07 13.41 -148.98 -2.00 -26.06 16 13 C 0.17 7.00 2.60 45.02 0.12 7.11 16 14 C -0.12 -4.59 5.29 30.67 0.16 -4.43 16 15 C 0.12 3.75 6.43 86.36 0.56 4.30 16 16 N -0.58 -19.39 2.98 -822.81 -2.45 -21.84 16 17 C 0.56 18.96 7.62 86.88 0.66 19.62 16 18 O -0.57 -21.59 15.94 -3.78 -0.06 -21.65 16 19 C 0.08 2.28 6.46 41.85 0.27 2.55 16 20 C -0.13 -2.71 9.62 22.61 0.22 -2.49 16 21 C -0.05 -0.66 10.16 22.42 0.23 -0.44 16 22 C -0.15 -2.02 10.04 22.54 0.23 -1.79 16 23 C 0.29 5.91 7.74 84.92 0.66 6.57 16 24 O -0.49 -8.33 13.56 -89.89 -1.22 -9.55 16 25 N -0.49 -12.90 6.38 -298.19 -1.90 -14.80 16 26 C 0.09 2.82 5.97 86.22 0.51 3.34 16 27 C -0.12 -4.72 5.29 30.53 0.16 -4.55 16 28 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.08 4.54 5.32 -2.39 -0.01 4.53 16 30 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.37 11.08 9.12 -74.06 -0.68 10.41 16 34 H 0.06 2.30 7.87 -2.39 -0.02 2.28 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.58 7.14 -2.39 -0.02 1.57 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.08 2.72 7.00 -2.39 -0.02 2.70 16 39 H 0.15 3.08 7.79 -2.91 -0.02 3.06 16 40 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 41 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.42 3.55 9.06 -74.06 -0.67 2.88 16 43 H 0.14 4.35 3.96 -57.61 -0.23 4.13 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.03 1.55 7.71 -2.39 -0.02 1.53 16 Total: -1.00 -75.95 373.00 -1.57 -77.52 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.53 Total: 24.51 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 5.90 Total: 26.84 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.69 Total: -119.78 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -3.28 Total: -57.26 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.95 -1.57 -77.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316811065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.286 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds