Wall clock time and date at job start Tue Mar 31 2020 19:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00358 * 2 1 4 4 H 1.48501 * 109.47404 * 240.00381 * 3 2 1 5 5 H 1.48504 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46961 * 120.00277 * 3 2 1 7 7 C 1.38815 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.48041 * 126.94281 * 359.94256 * 9 7 2 11 11 C 1.56018 * 105.09968 * 182.05103 * 10 9 7 12 12 H 1.09007 * 116.89225 * 159.15131 * 11 10 9 13 13 C 1.57084 * 99.60888 * 32.75296 * 11 10 9 14 14 C 1.49283 * 126.94447 * 180.02562 * 9 7 2 15 15 H 1.08994 * 116.79368 * 16.30855 * 14 9 7 16 16 C 1.56027 * 104.09083 * 246.70042 * 14 9 7 17 17 N 1.47862 * 105.10565 * 288.77157 * 16 14 9 18 18 C 1.34774 * 126.94435 * 181.99463 * 17 16 14 19 19 O 1.21288 * 119.99741 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00113 * 0.02562 * 18 17 16 21 21 C 1.53003 * 109.47120 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.46846 * 180.02562 * 21 20 18 23 23 N 1.46501 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.33875 * 122.76402 * 269.70973 * 23 22 21 25 25 O 1.21225 * 125.39646 * 359.97438 * 24 23 22 26 26 C 1.51317 * 109.20499 * 179.84255 * 24 23 22 27 27 C 1.54226 * 103.55680 * 0.38849 * 26 24 23 28 28 C 1.33878 * 122.75950 * 89.99838 * 23 22 21 29 29 O 1.21224 * 125.39640 * 0.02620 * 28 23 22 30 30 H 0.97001 * 120.00023 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36538 * 63.12452 * 10 9 7 32 32 H 1.08999 * 110.27054 * 300.93429 * 10 9 7 33 33 H 1.09002 * 112.36934 * 191.71157 * 13 11 10 34 34 H 1.08998 * 112.36794 * 64.35951 * 13 11 10 35 35 H 1.09003 * 110.31373 * 47.67480 * 16 14 9 36 36 H 1.09001 * 110.31754 * 169.75893 * 16 14 9 37 37 H 1.09001 * 109.47227 * 299.99926 * 20 18 17 38 38 H 1.08998 * 109.47291 * 60.00333 * 20 18 17 39 39 H 1.08997 * 109.47075 * 299.99610 * 21 20 18 40 40 H 1.09000 * 109.47411 * 60.00249 * 21 20 18 41 41 H 1.08994 * 109.47555 * 299.99509 * 22 21 20 42 42 H 1.08998 * 109.47565 * 59.99906 * 22 21 20 43 43 H 1.09004 * 110.79984 * 241.77965 * 26 24 23 44 44 H 1.09003 * 110.55006 * 118.87824 * 26 24 23 45 45 H 1.09006 * 110.60609 * 241.26203 * 27 26 24 46 46 H 1.08993 * 110.74156 * 118.35936 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1441 -2.5671 0.0012 11 6 -0.3656 -4.1105 0.0542 12 1 -1.3359 -4.4575 0.4096 13 6 0.8840 -4.5254 0.9110 14 6 1.9100 -3.7617 -0.0005 15 1 2.9616 -3.8481 0.2727 16 6 1.5080 -4.3457 -1.3904 17 7 0.0513 -4.5834 -1.3018 18 6 -0.7413 -5.1188 -2.2512 19 8 -1.9282 -5.2568 -2.0433 20 6 -0.1528 -5.5462 -3.5711 21 6 -1.2587 -6.1159 -4.4620 22 6 -0.6610 -6.5503 -5.8018 23 7 -1.7197 -7.0963 -6.6546 24 6 -2.0472 -8.3944 -6.6616 25 8 -1.5249 -9.2540 -5.9849 26 6 -3.1746 -8.6181 -7.6457 27 6 -3.4380 -7.2110 -8.2196 28 6 -2.4356 -6.3392 -7.4951 29 8 -2.3016 -5.1446 -7.6515 30 1 -0.4850 0.8401 0.0004 31 1 -0.5776 -2.1537 -0.9095 32 1 -0.5814 -2.0916 0.8791 33 1 1.0491 -5.6028 0.9091 34 1 0.8465 -4.1205 1.9223 35 1 1.7268 -3.6271 -2.1804 36 1 2.0353 -5.2817 -1.5746 37 1 0.3015 -4.6856 -4.0621 38 1 0.6061 -6.3097 -3.4004 39 1 -1.7134 -6.9764 -3.9713 40 1 -2.0173 -5.3521 -4.6328 41 1 -0.2061 -5.6901 -6.2927 42 1 0.0974 -7.3142 -5.6307 43 1 -4.0616 -8.9977 -7.1384 44 1 -2.8633 -9.3022 -8.4352 45 1 -4.4560 -6.8906 -7.9977 46 1 -3.2569 -7.1922 -9.2942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318202150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:54 Heat of formation + Delta-G solvation = -43.927743 kcal Electronic energy + Delta-G solvation = -29032.896259 eV Core-core repulsion = 24924.537675 eV Total energy + Delta-G solvation = -4108.358584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16534 -40.04681 -38.85577 -38.02238 -36.22708 -35.01138 -33.61305 -32.33833 -31.41115 -29.15470 -28.55952 -27.12398 -26.55501 -25.19562 -23.67543 -22.71173 -22.49358 -20.31479 -19.86959 -19.74998 -18.41198 -17.66558 -17.34573 -16.95449 -16.80307 -16.20787 -15.83344 -15.51268 -15.06687 -14.61843 -14.53357 -14.35091 -14.28483 -14.17904 -13.88613 -13.37782 -13.18281 -13.13076 -12.72246 -12.17611 -12.10361 -11.92823 -11.82125 -11.78155 -11.61484 -11.30548 -11.02089 -10.90383 -10.89952 -10.84711 -10.77010 -10.59071 -10.34832 -10.26984 -10.09563 -10.04823 -9.64204 -9.41491 -8.71055 -7.99347 -6.93895 -5.77292 -3.12155 1.17929 2.17526 2.38332 3.06709 3.37025 3.40791 3.41320 3.43573 3.67892 3.81872 4.00229 4.38501 4.41192 4.64152 4.71096 4.84353 4.99536 5.00552 5.12749 5.12849 5.17334 5.18315 5.23097 5.28630 5.38483 5.47661 5.55534 5.59953 5.63832 5.76703 5.89135 5.96727 6.15951 6.18905 6.28260 6.40761 6.49876 6.51865 6.59121 6.69004 6.98396 7.41357 7.44487 7.48456 7.71007 8.08230 8.12712 8.60771 9.09094 9.70295 10.39390 11.34710 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002470 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.535639 B =11334.043803 C =12198.914991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.097 3.903 12 H 0.113 0.887 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.083 3.917 17 N -0.607 5.607 18 C 0.528 3.472 19 O -0.558 6.558 20 C -0.131 4.131 21 C -0.116 4.116 22 C 0.097 3.903 23 N -0.573 5.573 24 C 0.525 3.475 25 O -0.481 6.481 26 C -0.157 4.157 27 C -0.157 4.157 28 C 0.523 3.477 29 O -0.476 6.476 30 H 0.255 0.745 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -18.187 -14.403 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.131 0.869 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.042 4.042 17 N -0.340 5.340 18 C 0.316 3.684 19 O -0.437 6.437 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.023 4.023 23 N -0.316 5.316 24 C 0.314 3.686 25 O -0.352 6.352 26 C -0.197 4.197 27 C -0.197 4.197 28 C 0.312 3.688 29 O -0.347 6.347 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.343 -17.786 -14.077 22.928 hybrid contribution 0.522 1.032 -0.049 1.157 sum -2.820 -16.754 -14.126 22.096 Atomic orbital electron populations 1.69906 1.04958 1.25467 1.56222 1.24829 0.95688 0.97746 1.01994 0.86189 0.78438 0.83149 0.77877 1.21151 1.21622 1.21105 1.19001 0.90363 0.82081 1.44674 0.90189 1.45264 1.01313 0.99249 1.86310 1.21928 0.84598 0.87135 1.01303 1.24388 0.97690 0.97664 0.80756 0.86931 1.24165 0.96886 0.98875 0.99273 1.23149 0.96522 0.86324 0.90816 0.87596 1.23299 0.79903 0.98850 1.02166 1.49293 1.09446 1.59878 1.15431 1.20045 0.86116 0.77324 0.84875 1.90661 1.15479 1.56959 1.80641 1.21480 0.99179 1.02571 0.93913 1.21604 0.98402 1.02253 0.93200 1.21879 0.88980 1.00523 0.90964 1.46778 1.35224 1.10908 1.38696 1.20839 0.83828 0.81296 0.82603 1.90792 1.55454 1.46342 1.42619 1.22475 0.99078 0.98557 0.99583 1.22481 1.01099 0.93398 1.02738 1.20864 0.81549 0.87580 0.78792 1.90820 1.67111 1.13241 1.63492 0.93505 0.93462 0.92653 0.91699 0.89825 0.91060 0.92820 0.88701 0.89010 0.90661 0.90486 0.88608 0.88710 0.86052 0.86205 0.86056 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.56 55.49 0.59 -26.34 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.20 10.38 -15.06 -0.16 -6.35 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.35 3.02 -156.22 -0.47 -14.82 16 10 C 0.18 4.25 4.77 -1.58 -0.01 4.24 16 11 C 0.10 1.92 5.25 -62.41 -0.33 1.59 16 12 H 0.11 2.17 8.07 -51.93 -0.42 1.76 16 13 C -0.15 -2.59 6.80 -22.31 -0.15 -2.74 16 14 C 0.14 2.59 5.53 -62.56 -0.35 2.24 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.08 1.39 6.01 -1.67 -0.01 1.38 16 17 N -0.61 -11.23 2.95 -156.59 -0.46 -11.69 16 18 C 0.53 9.65 7.90 -10.99 -0.09 9.56 16 19 O -0.56 -12.03 16.34 5.55 0.09 -11.94 16 20 C -0.13 -1.76 4.99 -27.88 -0.14 -1.90 16 21 C -0.12 -1.50 4.83 -26.73 -0.13 -1.63 16 22 C 0.10 1.01 5.56 -4.04 -0.02 0.98 16 23 N -0.57 -5.53 2.55 -115.34 -0.29 -5.83 16 24 C 0.53 4.68 8.08 -11.08 -0.09 4.59 16 25 O -0.48 -5.96 17.47 5.60 0.10 -5.86 16 26 C -0.16 -0.63 7.03 -26.94 -0.19 -0.82 16 27 C -0.16 -0.66 7.03 -26.94 -0.19 -0.85 16 28 C 0.52 4.90 8.08 -11.08 -0.09 4.81 16 29 O -0.48 -6.37 17.48 5.61 0.10 -6.27 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 1.32 7.68 -51.93 -0.40 0.92 16 32 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.10 0.96 7.83 -51.93 -0.41 0.55 16 42 H 0.09 0.89 7.82 -51.93 -0.41 0.48 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -36.22 379.70 -8.74 -44.97 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.05 Total: 0.47 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -2.03 Total: 14.86 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.64 Total: -58.68 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.29 Total: -24.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.22 -8.74 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318202150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.038 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds