Wall clock time and date at job start Tue Mar 31 2020 19:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00358 * 2 1 4 4 H 1.48501 * 109.47404 * 240.00381 * 3 2 1 5 5 H 1.48504 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46961 * 120.00277 * 3 2 1 7 7 C 1.38815 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.48041 * 126.94281 * 359.94256 * 9 7 2 11 11 C 1.56018 * 105.09968 * 182.05103 * 10 9 7 12 12 H 1.09007 * 116.89225 * 159.15131 * 11 10 9 13 13 C 1.57084 * 99.60888 * 32.75296 * 11 10 9 14 14 C 1.49283 * 126.94447 * 180.02562 * 9 7 2 15 15 H 1.08994 * 116.79368 * 16.30855 * 14 9 7 16 16 C 1.56027 * 104.09083 * 246.70042 * 14 9 7 17 17 N 1.47862 * 105.10565 * 288.77157 * 16 14 9 18 18 C 1.34774 * 126.94435 * 181.99463 * 17 16 14 19 19 O 1.21288 * 119.99741 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00113 * 0.02562 * 18 17 16 21 21 C 1.53003 * 109.47120 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.46846 * 180.02562 * 21 20 18 23 23 N 1.46501 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.33875 * 122.76402 * 269.70973 * 23 22 21 25 25 O 1.21225 * 125.39646 * 359.97438 * 24 23 22 26 26 C 1.51317 * 109.20499 * 179.84255 * 24 23 22 27 27 C 1.54226 * 103.55680 * 0.38849 * 26 24 23 28 28 C 1.33878 * 122.75950 * 89.99838 * 23 22 21 29 29 O 1.21224 * 125.39640 * 0.02620 * 28 23 22 30 30 H 0.97001 * 120.00023 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36538 * 63.12452 * 10 9 7 32 32 H 1.08999 * 110.27054 * 300.93429 * 10 9 7 33 33 H 1.09002 * 112.36934 * 191.71157 * 13 11 10 34 34 H 1.08998 * 112.36794 * 64.35951 * 13 11 10 35 35 H 1.09003 * 110.31373 * 47.67480 * 16 14 9 36 36 H 1.09001 * 110.31754 * 169.75893 * 16 14 9 37 37 H 1.09001 * 109.47227 * 299.99926 * 20 18 17 38 38 H 1.08998 * 109.47291 * 60.00333 * 20 18 17 39 39 H 1.08997 * 109.47075 * 299.99610 * 21 20 18 40 40 H 1.09000 * 109.47411 * 60.00249 * 21 20 18 41 41 H 1.08994 * 109.47555 * 299.99509 * 22 21 20 42 42 H 1.08998 * 109.47565 * 59.99906 * 22 21 20 43 43 H 1.09004 * 110.79984 * 241.77965 * 26 24 23 44 44 H 1.09003 * 110.55006 * 118.87824 * 26 24 23 45 45 H 1.09006 * 110.60609 * 241.26203 * 27 26 24 46 46 H 1.08993 * 110.74156 * 118.35936 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1441 -2.5671 0.0012 11 6 -0.3656 -4.1105 0.0542 12 1 -1.3359 -4.4575 0.4096 13 6 0.8840 -4.5254 0.9110 14 6 1.9100 -3.7617 -0.0005 15 1 2.9616 -3.8481 0.2727 16 6 1.5080 -4.3457 -1.3904 17 7 0.0513 -4.5834 -1.3018 18 6 -0.7413 -5.1188 -2.2512 19 8 -1.9282 -5.2568 -2.0433 20 6 -0.1528 -5.5462 -3.5711 21 6 -1.2587 -6.1159 -4.4620 22 6 -0.6610 -6.5503 -5.8018 23 7 -1.7197 -7.0963 -6.6546 24 6 -2.0472 -8.3944 -6.6616 25 8 -1.5249 -9.2540 -5.9849 26 6 -3.1746 -8.6181 -7.6457 27 6 -3.4380 -7.2110 -8.2196 28 6 -2.4356 -6.3392 -7.4951 29 8 -2.3016 -5.1446 -7.6515 30 1 -0.4850 0.8401 0.0004 31 1 -0.5776 -2.1537 -0.9095 32 1 -0.5814 -2.0916 0.8791 33 1 1.0491 -5.6028 0.9091 34 1 0.8465 -4.1205 1.9223 35 1 1.7268 -3.6271 -2.1804 36 1 2.0353 -5.2817 -1.5746 37 1 0.3015 -4.6856 -4.0621 38 1 0.6061 -6.3097 -3.4004 39 1 -1.7134 -6.9764 -3.9713 40 1 -2.0173 -5.3521 -4.6328 41 1 -0.2061 -5.6901 -6.2927 42 1 0.0974 -7.3142 -5.6307 43 1 -4.0616 -8.9977 -7.1384 44 1 -2.8633 -9.3022 -8.4352 45 1 -4.4560 -6.8906 -7.9977 46 1 -3.2569 -7.1922 -9.2942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318202150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:53 Heat of formation + Delta-G solvation = -68.833656 kcal Electronic energy + Delta-G solvation = -29033.976260 eV Core-core repulsion = 24924.537675 eV Total energy + Delta-G solvation = -4109.438585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.85442 -41.58690 -39.65365 -39.55068 -37.06954 -35.84782 -35.46412 -33.52686 -32.80728 -30.80750 -30.25054 -28.13840 -27.09876 -26.98782 -25.26950 -23.72559 -23.29496 -21.82695 -21.42985 -20.53411 -19.97782 -18.91820 -18.30595 -18.05161 -17.62186 -17.56475 -17.34969 -16.86332 -16.34335 -15.83646 -15.70554 -15.53261 -15.28927 -14.92172 -14.89961 -14.78916 -14.61462 -13.93117 -13.68305 -13.63848 -13.41766 -13.39730 -13.13137 -13.07353 -12.83599 -12.82550 -12.67646 -12.32703 -12.16711 -12.11231 -12.09960 -11.95937 -11.88253 -11.64003 -11.53872 -11.08596 -11.03211 -10.86429 -10.69002 -9.55368 -8.92711 -7.85695 -5.21740 0.49027 1.45480 1.47995 1.48750 1.54657 1.61960 1.72304 2.01661 2.47554 3.22283 3.27516 3.31377 3.34059 3.51358 3.64077 3.74971 3.79735 3.80923 3.89195 4.00746 4.12900 4.19602 4.22464 4.28692 4.34174 4.51244 4.53506 4.60872 4.70302 4.76722 4.84092 4.87326 4.90431 4.93373 4.94910 5.00509 5.08821 5.13530 5.23862 5.43667 5.51374 5.63124 5.82556 6.08106 6.31591 6.66240 6.73642 7.00840 7.14335 7.69650 8.40345 9.25380 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002470 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.535639 B =11334.043803 C =12198.914991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.617 5.617 10 C 0.189 3.811 11 C 0.097 3.903 12 H 0.110 0.890 13 C -0.129 4.129 14 C 0.135 3.865 15 H 0.138 0.862 16 C 0.090 3.910 17 N -0.611 5.611 18 C 0.517 3.483 19 O -0.600 6.600 20 C -0.120 4.120 21 C -0.105 4.105 22 C 0.099 3.901 23 N -0.581 5.581 24 C 0.519 3.481 25 O -0.521 6.521 26 C -0.142 4.142 27 C -0.143 4.143 28 C 0.515 3.485 29 O -0.527 6.527 30 H 0.243 0.757 31 H -0.006 1.006 32 H 0.016 0.984 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.139 0.861 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -21.078 -15.881 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.359 4.359 8 H 0.115 0.885 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.006 4.006 12 H 0.128 0.872 13 C -0.168 4.168 14 C 0.028 3.972 15 H 0.156 0.844 16 C -0.034 4.034 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.482 6.482 20 C -0.160 4.160 21 C -0.144 4.144 22 C -0.023 4.023 23 N -0.324 5.324 24 C 0.311 3.689 25 O -0.395 6.395 26 C -0.180 4.180 27 C -0.182 4.182 28 C 0.307 3.693 29 O -0.401 6.401 30 H 0.052 0.948 31 H 0.012 0.988 32 H 0.034 0.966 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.169 0.831 45 H 0.157 0.843 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.439 -20.738 -15.572 25.973 hybrid contribution -0.053 1.890 0.430 1.939 sum -1.492 -18.848 -15.142 24.223 Atomic orbital electron populations 1.70165 1.06688 1.25194 1.58768 1.25699 0.96399 1.01332 1.03197 0.85144 0.76963 0.78769 0.78413 1.20180 1.23115 1.19821 1.19525 0.91306 0.83093 1.41974 0.88483 1.45525 1.01320 1.01167 1.86137 1.21502 0.85051 0.90187 0.96969 1.24195 0.99320 0.94191 0.82890 0.87197 1.24058 0.93829 1.00873 0.98069 1.23601 0.98298 0.83118 0.92149 0.84427 1.23256 0.78933 1.00885 1.00333 1.49406 1.10456 1.59541 1.14955 1.20945 0.85675 0.76533 0.86025 1.90637 1.17420 1.58636 1.81495 1.21499 0.99694 1.03832 0.90959 1.21449 0.97700 1.00588 0.94620 1.21773 0.89599 1.01132 0.89755 1.47015 1.35123 1.11679 1.38534 1.21737 0.84290 0.80264 0.82600 1.90769 1.57093 1.47140 1.44489 1.22599 0.97555 0.98955 0.98938 1.22608 1.00068 0.91876 1.03627 1.21841 0.81765 0.87344 0.78342 1.90793 1.68669 1.15534 1.65095 0.94780 0.98764 0.96572 0.87830 0.90266 0.92708 0.87521 0.87839 0.85354 0.92046 0.93571 0.88492 0.87273 0.84013 0.83106 0.84263 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.43 10.56 21.65 0.23 -59.20 16 2 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 3 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.23 -12.25 10.38 84.03 0.87 -11.38 16 8 H 0.10 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.62 -29.78 3.02 -648.16 -1.96 -31.74 16 10 C 0.19 9.64 4.77 87.13 0.42 10.06 16 11 C 0.10 3.87 5.25 46.88 0.25 4.11 16 12 H 0.11 4.39 8.07 -2.38 -0.02 4.37 16 13 C -0.13 -4.07 6.80 33.46 0.23 -3.84 16 14 C 0.13 4.58 5.53 46.93 0.26 4.84 16 15 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 16 C 0.09 2.75 6.01 87.17 0.52 3.28 16 17 N -0.61 -22.10 2.95 -767.71 -2.27 -24.36 16 18 C 0.52 18.89 7.90 87.66 0.69 19.59 16 19 O -0.60 -26.74 16.34 -3.05 -0.05 -26.79 16 20 C -0.12 -3.08 4.99 29.85 0.15 -2.93 16 21 C -0.10 -2.75 4.83 30.60 0.15 -2.60 16 22 C 0.10 2.00 5.56 86.38 0.48 2.48 16 23 N -0.58 -10.78 2.55 -756.66 -1.93 -12.71 16 24 C 0.52 8.41 8.08 87.99 0.71 9.12 16 25 O -0.52 -12.35 17.47 -2.86 -0.05 -12.40 16 26 C -0.14 -0.62 7.03 30.46 0.21 -0.41 16 27 C -0.14 -0.75 7.03 30.46 0.21 -0.54 16 28 C 0.52 9.24 8.08 87.99 0.71 9.95 16 29 O -0.53 -14.39 17.48 -2.86 -0.05 -14.44 16 30 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 31 H -0.01 -0.36 7.68 -2.39 -0.02 -0.37 16 32 H 0.02 0.93 7.46 -2.39 -0.02 0.91 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.05 1.47 8.10 -2.39 -0.02 1.46 16 41 H 0.10 1.92 7.83 -2.39 -0.02 1.91 16 42 H 0.11 1.88 7.82 -2.39 -0.02 1.86 16 43 H 0.14 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -87.23 379.70 3.26 -83.97 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.98 Total: 11.98 kcal Atomic # 6 Polarization: 31.68 SS G_CDS: 6.33 Total: 38.00 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -5.93 Total: -128.01 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.15 Total: -53.63 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -87.23 3.26 -83.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318202150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.135 kcal (2) G-P(sol) polarization free energy of solvation -87.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds