Wall clock time and date at job start Tue Mar 31 2020 18:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00275 * 2 1 4 4 H 1.48504 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47410 * 299.99809 * 3 2 1 6 6 H 1.48501 * 109.47401 * 59.99969 * 3 2 1 7 7 C 1.38813 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00065 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47205 * 185.01594 * 10 9 7 12 12 H 1.09000 * 109.99796 * 306.32868 * 11 10 9 13 13 C 1.54324 * 109.88472 * 67.42778 * 11 10 9 14 14 C 1.55153 * 102.94562 * 141.61123 * 13 11 10 15 15 C 1.55130 * 101.48369 * 324.33301 * 14 13 11 16 16 N 1.47026 * 109.88166 * 185.23359 * 11 10 9 17 17 C 1.34776 * 125.64569 * 61.60682 * 16 11 10 18 18 O 1.21279 * 120.00098 * 355.07203 * 17 16 11 19 19 C 1.50709 * 119.99919 * 175.07587 * 17 16 11 20 20 C 1.52998 * 109.46956 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46671 * 179.97438 * 20 19 17 22 22 C 1.34776 * 119.99634 * 180.02562 * 21 20 19 23 23 O 1.21696 * 120.00298 * 359.97438 * 22 21 20 24 24 C 1.46660 * 119.99853 * 180.02562 * 22 21 20 25 25 C 1.36541 * 125.98633 * 179.71330 * 24 22 21 26 26 C 1.40370 * 106.70767 * 179.91090 * 25 24 22 27 27 C 1.35132 * 107.11335 * 0.35095 * 26 25 24 28 28 O 1.33934 * 108.76860 * 359.78064 * 27 26 25 29 29 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00315 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46949 * 65.01204 * 10 9 7 32 32 H 1.09003 * 109.47373 * 305.01892 * 10 9 7 33 33 H 1.09001 * 110.71913 * 259.97071 * 13 11 10 34 34 H 1.08997 * 110.71761 * 23.24476 * 13 11 10 35 35 H 1.08996 * 111.00549 * 82.56538 * 14 13 11 36 36 H 1.08998 * 111.00577 * 206.42652 * 14 13 11 37 37 H 1.09009 * 110.49854 * 278.45194 * 15 14 13 38 38 H 1.08999 * 110.34434 * 156.06304 * 15 14 13 39 39 H 1.09001 * 109.46999 * 59.99741 * 19 17 16 40 40 H 1.09002 * 109.46862 * 300.00120 * 19 17 16 41 41 H 1.08998 * 109.47128 * 299.99848 * 20 19 17 42 42 H 1.09001 * 109.47285 * 60.00152 * 20 19 17 43 43 H 0.97002 * 120.00390 * 0.02562 * 21 20 19 44 44 H 1.07995 * 126.64907 * 0.03798 * 25 24 22 45 45 H 1.07994 * 126.44317 * 180.11827 * 26 25 24 46 46 H 1.07997 * 125.61891 * 179.78576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0684 -4.8169 -0.1256 12 1 0.3043 -4.7409 0.6480 13 6 0.4077 -4.7940 -1.5200 14 6 0.3126 -6.2991 -1.8844 15 6 1.6194 -6.8519 -1.2572 16 7 1.7805 -6.0972 -0.0010 17 6 2.4709 -6.5100 1.0804 18 8 2.6170 -5.7660 2.0269 19 6 3.0614 -7.8962 1.1133 20 6 3.7887 -8.1092 2.4424 21 7 4.3622 -9.4569 2.4747 22 6 5.0525 -9.8698 3.5561 23 8 5.1999 -9.1229 4.5055 24 6 5.6271 -11.2187 3.5882 25 6 6.3497 -11.7588 4.6131 26 6 6.6958 -13.0613 4.2204 27 6 6.1826 -13.2538 2.9852 28 8 5.5394 -12.1413 2.6077 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6155 -3.7545 0.9321 32 1 2.7503 -3.6768 -0.8411 33 1 -0.5848 -4.3462 -1.4691 34 1 1.0354 -4.2629 -2.2355 35 1 -0.5664 -6.7563 -1.4302 36 1 0.3101 -6.4401 -2.9652 37 1 2.4665 -6.6718 -1.9192 38 1 1.5190 -7.9172 -1.0495 39 1 3.7676 -8.0100 0.2908 40 1 2.2645 -8.6331 1.0126 41 1 4.5856 -7.3723 2.5427 42 1 3.0829 -7.9953 3.2652 43 1 4.2451 -10.0521 1.7177 44 1 6.6037 -11.2780 5.5462 45 1 7.2682 -13.7740 4.7955 46 1 6.2757 -14.1560 2.3991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319130410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:29 Heat of formation + Delta-G solvation = -38.333210 kcal Electronic energy + Delta-G solvation = -27870.407219 eV Core-core repulsion = 23762.291232 eV Total energy + Delta-G solvation = -4108.115987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.10677 -40.25604 -39.63092 -37.56226 -35.52601 -34.48293 -33.52300 -32.16948 -31.29891 -31.19043 -29.89831 -28.64610 -25.38862 -24.90780 -23.31407 -22.52081 -22.13729 -21.97260 -20.87296 -20.52278 -19.19727 -18.58429 -17.42316 -16.84191 -16.81505 -16.72039 -16.42473 -15.87465 -15.75319 -14.86592 -14.53869 -14.49908 -14.39347 -13.70827 -13.59507 -13.50202 -13.44899 -13.22682 -13.19850 -13.08631 -12.81002 -12.56991 -12.23351 -12.09538 -11.78984 -11.44602 -11.16292 -10.90077 -10.81906 -10.68693 -10.56206 -10.51918 -10.43925 -9.98965 -9.79066 -9.59860 -9.53946 -9.10481 -8.79641 -8.47925 -6.84885 -5.71111 -2.98922 0.64164 1.91409 2.20888 2.67083 2.69740 2.83296 3.16583 3.47770 3.53840 3.56096 4.19782 4.40791 4.44976 4.49536 4.56637 4.61858 4.66872 4.75352 4.94040 4.99018 5.12569 5.17778 5.32036 5.36610 5.40801 5.43643 5.55454 5.61363 5.62908 5.74495 5.79033 5.86000 5.89821 5.95783 6.04598 6.08403 6.18500 6.35363 6.41979 6.54963 6.83146 7.05441 7.06182 7.62944 7.71891 7.77271 8.25753 8.48016 9.58978 10.15789 10.51279 11.52062 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.001972 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.346794 B =14193.302510 C =15437.285668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.076 0.924 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.099 3.901 16 N -0.613 5.613 17 C 0.528 3.472 18 O -0.522 6.522 19 C -0.148 4.148 20 C 0.132 3.868 21 N -0.721 5.721 22 C 0.602 3.398 23 O -0.512 6.512 24 C -0.078 4.078 25 C -0.120 4.120 26 C -0.225 4.225 27 C -0.008 4.008 28 O -0.165 6.165 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.036 0.964 32 H 0.019 0.981 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.404 0.596 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 -32.182 -1.468 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.094 0.906 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.348 5.348 17 C 0.315 3.685 18 O -0.397 6.397 19 C -0.188 4.188 20 C 0.009 3.991 21 N -0.372 5.372 22 C 0.387 3.613 23 O -0.389 6.389 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.244 4.244 27 C -0.077 4.077 28 O -0.061 6.061 29 H 0.063 0.937 30 H 0.216 0.784 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.239 0.761 44 H 0.179 0.821 45 H 0.175 0.825 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.014 -31.048 -0.468 32.069 hybrid contribution 0.217 0.410 -0.354 0.583 sum 8.232 -30.638 -0.821 31.735 Atomic orbital electron populations 1.69668 1.05052 1.25424 1.58242 1.24720 0.95554 0.97614 1.03255 0.86103 0.78811 0.84114 0.77117 1.20593 1.21939 1.21883 1.19263 0.91051 0.84020 1.42039 0.91219 1.42207 1.05720 0.99743 1.89633 1.20991 0.93364 0.85076 0.98928 1.21842 0.94542 0.83112 0.97734 0.90598 1.22670 1.02151 0.95195 0.95820 1.22838 0.96766 0.96770 1.00922 1.22383 0.98469 0.95809 0.85729 1.48531 1.52343 1.19646 1.14257 1.19843 0.78454 0.88415 0.81797 1.90810 1.57888 1.55845 1.35160 1.21777 1.01578 0.96086 0.99396 1.21163 0.98625 0.82258 0.97058 1.45867 1.55055 1.17068 1.19207 1.16506 0.78336 0.83307 0.83126 1.90943 1.59272 1.53161 1.35481 1.22113 1.08849 0.91700 0.90390 1.22031 0.97630 0.94582 0.99791 1.21899 1.06990 0.98042 0.97448 1.24432 0.96583 0.89737 0.96991 1.84052 1.59764 1.21552 1.40717 0.93653 0.78379 0.94649 0.96274 0.89770 0.89898 0.90772 0.90017 0.91220 0.90918 0.88289 0.88301 0.89762 0.89851 0.76124 0.82106 0.82509 0.77260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.23 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.20 5.42 -59.91 -0.32 -19.52 16 10 C 0.14 3.17 5.66 -4.04 -0.02 3.15 16 11 C 0.13 2.23 2.94 -66.95 -0.20 2.03 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.70 6.23 -24.90 -0.16 -1.85 16 14 C -0.13 -1.29 7.10 -24.47 -0.17 -1.47 16 15 C 0.10 0.92 6.75 -2.41 -0.02 0.90 16 16 N -0.61 -8.39 3.06 -162.87 -0.50 -8.88 16 17 C 0.53 7.58 7.66 -10.98 -0.08 7.49 16 18 O -0.52 -10.14 14.77 5.56 0.08 -10.05 16 19 C -0.15 -1.31 4.74 -27.88 -0.13 -1.45 16 20 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16 21 N -0.72 -6.47 5.55 -61.62 -0.34 -6.81 16 22 C 0.60 6.90 7.79 -12.86 -0.10 6.80 16 23 O -0.51 -7.87 16.86 5.19 0.09 -7.78 16 24 C -0.08 -0.74 7.13 -36.80 -0.26 -1.01 16 25 C -0.12 -1.02 10.62 -39.39 -0.42 -1.44 16 26 C -0.22 -1.32 10.88 -39.88 -0.43 -1.76 16 27 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 28 O -0.17 -1.22 10.40 4.98 0.05 -1.17 16 29 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 30 H 0.38 10.39 7.61 -40.82 -0.31 10.08 16 31 H 0.04 0.88 6.55 -51.93 -0.34 0.54 16 32 H 0.02 0.42 8.02 -51.93 -0.42 0.01 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.27 7.76 -51.93 -0.40 0.87 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.46 7.48 -51.93 -0.39 0.07 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.62 7.96 -51.93 -0.41 0.21 16 41 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.40 2.41 8.23 -40.82 -0.34 2.07 16 44 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.21 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -37.91 389.00 -8.09 -45.99 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.80 Total: 6.66 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.90 Total: 5.64 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.44 Total: -63.30 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.22 Total: -19.00 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.91 -8.09 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319130410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds