Wall clock time and date at job start Tue Mar 31 2020 18:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00275 * 2 1 4 4 H 1.48504 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47410 * 299.99809 * 3 2 1 6 6 H 1.48501 * 109.47401 * 59.99969 * 3 2 1 7 7 C 1.38813 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00065 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47205 * 185.01594 * 10 9 7 12 12 H 1.09000 * 109.99796 * 306.32868 * 11 10 9 13 13 C 1.54324 * 109.88472 * 67.42778 * 11 10 9 14 14 C 1.55153 * 102.94562 * 141.61123 * 13 11 10 15 15 C 1.55130 * 101.48369 * 324.33301 * 14 13 11 16 16 N 1.47026 * 109.88166 * 185.23359 * 11 10 9 17 17 C 1.34776 * 125.64569 * 61.60682 * 16 11 10 18 18 O 1.21279 * 120.00098 * 355.07203 * 17 16 11 19 19 C 1.50709 * 119.99919 * 175.07587 * 17 16 11 20 20 C 1.52998 * 109.46956 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46671 * 179.97438 * 20 19 17 22 22 C 1.34776 * 119.99634 * 180.02562 * 21 20 19 23 23 O 1.21696 * 120.00298 * 359.97438 * 22 21 20 24 24 C 1.46660 * 119.99853 * 180.02562 * 22 21 20 25 25 C 1.36541 * 125.98633 * 179.71330 * 24 22 21 26 26 C 1.40370 * 106.70767 * 179.91090 * 25 24 22 27 27 C 1.35132 * 107.11335 * 0.35095 * 26 25 24 28 28 O 1.33934 * 108.76860 * 359.78064 * 27 26 25 29 29 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00315 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46949 * 65.01204 * 10 9 7 32 32 H 1.09003 * 109.47373 * 305.01892 * 10 9 7 33 33 H 1.09001 * 110.71913 * 259.97071 * 13 11 10 34 34 H 1.08997 * 110.71761 * 23.24476 * 13 11 10 35 35 H 1.08996 * 111.00549 * 82.56538 * 14 13 11 36 36 H 1.08998 * 111.00577 * 206.42652 * 14 13 11 37 37 H 1.09009 * 110.49854 * 278.45194 * 15 14 13 38 38 H 1.08999 * 110.34434 * 156.06304 * 15 14 13 39 39 H 1.09001 * 109.46999 * 59.99741 * 19 17 16 40 40 H 1.09002 * 109.46862 * 300.00120 * 19 17 16 41 41 H 1.08998 * 109.47128 * 299.99848 * 20 19 17 42 42 H 1.09001 * 109.47285 * 60.00152 * 20 19 17 43 43 H 0.97002 * 120.00390 * 0.02562 * 21 20 19 44 44 H 1.07995 * 126.64907 * 0.03798 * 25 24 22 45 45 H 1.07994 * 126.44317 * 180.11827 * 26 25 24 46 46 H 1.07997 * 125.61891 * 179.78576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0684 -4.8169 -0.1256 12 1 0.3043 -4.7409 0.6480 13 6 0.4077 -4.7940 -1.5200 14 6 0.3126 -6.2991 -1.8844 15 6 1.6194 -6.8519 -1.2572 16 7 1.7805 -6.0972 -0.0010 17 6 2.4709 -6.5100 1.0804 18 8 2.6170 -5.7660 2.0269 19 6 3.0614 -7.8962 1.1133 20 6 3.7887 -8.1092 2.4424 21 7 4.3622 -9.4569 2.4747 22 6 5.0525 -9.8698 3.5561 23 8 5.1999 -9.1229 4.5055 24 6 5.6271 -11.2187 3.5882 25 6 6.3497 -11.7588 4.6131 26 6 6.6958 -13.0613 4.2204 27 6 6.1826 -13.2538 2.9852 28 8 5.5394 -12.1413 2.6077 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6155 -3.7545 0.9321 32 1 2.7503 -3.6768 -0.8411 33 1 -0.5848 -4.3462 -1.4691 34 1 1.0354 -4.2629 -2.2355 35 1 -0.5664 -6.7563 -1.4302 36 1 0.3101 -6.4401 -2.9652 37 1 2.4665 -6.6718 -1.9192 38 1 1.5190 -7.9172 -1.0495 39 1 3.7676 -8.0100 0.2908 40 1 2.2645 -8.6331 1.0126 41 1 4.5856 -7.3723 2.5427 42 1 3.0829 -7.9953 3.2652 43 1 4.2451 -10.0521 1.7177 44 1 6.6037 -11.2780 5.5462 45 1 7.2682 -13.7740 4.7955 46 1 6.2757 -14.1560 2.3991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319130410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:28 Heat of formation + Delta-G solvation = -67.796380 kcal Electronic energy + Delta-G solvation = -27871.684838 eV Core-core repulsion = 23762.291232 eV Total energy + Delta-G solvation = -4109.393606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63613 -41.36146 -40.56481 -38.76008 -36.49137 -36.40182 -34.06392 -33.64324 -32.84839 -32.07789 -30.67959 -30.07838 -26.74803 -26.15977 -24.63818 -23.73826 -23.09818 -22.66318 -21.81741 -21.46684 -20.24049 -19.52702 -19.06326 -18.20643 -17.66304 -17.43699 -17.24101 -16.79462 -16.70828 -16.43776 -15.96573 -15.62793 -15.29809 -15.14101 -15.04010 -14.95673 -14.49071 -14.13481 -14.06085 -13.94193 -13.69317 -13.58743 -13.52654 -13.07452 -12.97811 -12.90471 -12.78851 -12.53987 -12.17680 -12.00954 -11.93176 -11.79287 -11.64704 -11.57183 -11.06952 -11.05620 -10.83204 -10.41873 -9.67551 -9.64792 -9.05753 -8.00221 -5.29793 0.00193 1.42628 1.42733 1.45029 1.50777 1.55093 1.59865 1.86958 2.04645 2.28032 2.53382 3.32191 3.43580 3.62930 3.68356 3.75932 3.91102 3.94944 3.96869 4.03046 4.13200 4.13495 4.31955 4.36281 4.44537 4.54910 4.61055 4.75057 4.77044 4.82146 4.88019 4.92346 4.96346 4.97655 5.06560 5.14238 5.15261 5.17738 5.36855 5.39227 5.41978 5.48053 5.81234 6.21597 6.35948 6.57329 6.94273 7.15663 7.27987 7.99833 8.27000 9.23208 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.001972 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.346794 B =14193.302510 C =15437.285668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.151 3.849 11 C 0.136 3.864 12 H 0.049 0.951 13 C -0.119 4.119 14 C -0.120 4.120 15 C 0.094 3.906 16 N -0.611 5.611 17 C 0.517 3.483 18 O -0.588 6.588 19 C -0.126 4.126 20 C 0.138 3.862 21 N -0.700 5.700 22 C 0.598 3.402 23 O -0.567 6.567 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.237 4.237 27 C 0.017 3.983 28 O -0.165 6.165 29 H 0.253 0.747 30 H 0.376 0.624 31 H 0.002 0.998 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.423 0.577 44 H 0.153 0.847 45 H 0.181 0.819 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -36.006 -4.133 37.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.220 1.220 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.380 5.380 10 C 0.023 3.977 11 C 0.032 3.968 12 H 0.067 0.933 13 C -0.157 4.157 14 C -0.158 4.158 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.307 3.693 18 O -0.468 6.468 19 C -0.166 4.166 20 C 0.014 3.986 21 N -0.352 5.352 22 C 0.385 3.615 23 O -0.447 6.447 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.256 4.256 27 C -0.052 4.052 28 O -0.060 6.060 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.020 0.980 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.261 0.739 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 8.689 -34.948 -3.216 36.156 hybrid contribution 0.059 1.494 0.495 1.575 sum 8.748 -33.455 -2.720 34.686 Atomic orbital electron populations 1.69814 1.06448 1.26185 1.59121 1.25574 0.96543 1.01017 1.03275 0.85039 0.77964 0.79524 0.76996 1.19548 1.21074 1.21958 1.19587 0.91216 0.85437 1.41875 0.91507 1.42333 1.05495 1.00715 1.89440 1.20987 0.94191 0.85530 0.96988 1.21530 0.92972 0.83306 0.99002 0.93253 1.22572 1.00704 0.99080 0.93335 1.22859 0.97577 0.92389 1.02930 1.22790 0.98723 0.97686 0.83506 1.48655 1.51414 1.18535 1.15874 1.20894 0.77622 0.89984 0.80816 1.90790 1.60257 1.58072 1.37635 1.21715 1.02996 0.92946 0.98911 1.20897 0.97336 0.82573 0.97833 1.45613 1.53933 1.16400 1.19275 1.16833 0.77951 0.83919 0.82764 1.90906 1.61432 1.54971 1.37434 1.21635 1.10967 0.91602 0.91757 1.22274 0.97231 0.96049 0.99429 1.22224 1.07795 0.97192 0.98391 1.25427 0.93445 0.89657 0.96691 1.84044 1.60134 1.21861 1.40009 0.93768 0.79220 0.97998 0.96120 0.90846 0.91299 0.89578 0.87095 0.89812 0.86230 0.84621 0.84116 0.92786 0.92448 0.73873 0.82959 0.80113 0.72523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 7 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -40.75 5.42 -343.44 -1.86 -42.61 16 10 C 0.15 6.97 5.66 86.38 0.49 7.46 16 11 C 0.14 4.79 2.94 45.34 0.13 4.92 16 12 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.12 -3.30 6.23 31.78 0.20 -3.10 16 14 C -0.12 -1.86 7.10 32.06 0.23 -1.63 16 15 C 0.09 1.33 6.75 86.93 0.59 1.92 16 16 N -0.61 -16.04 3.06 -787.61 -2.41 -18.45 16 17 C 0.52 14.78 7.66 87.66 0.67 15.45 16 18 O -0.59 -24.47 14.77 -3.02 -0.04 -24.51 16 19 C -0.13 -1.92 4.74 29.85 0.14 -1.78 16 20 C 0.14 3.07 4.96 86.38 0.43 3.49 16 21 N -0.70 -12.07 5.55 -467.10 -2.59 -14.66 16 22 C 0.60 14.19 7.79 86.44 0.67 14.86 16 23 O -0.57 -18.91 16.86 -4.34 -0.07 -18.98 16 24 C -0.11 -1.99 7.13 24.07 0.17 -1.82 16 25 C -0.13 -2.17 10.62 22.39 0.24 -1.93 16 26 C -0.24 -2.20 10.88 22.07 0.24 -1.96 16 27 C 0.02 0.10 12.08 67.10 0.81 0.91 16 28 O -0.17 -1.98 10.40 -5.10 -0.05 -2.04 16 29 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.38 21.50 7.61 -92.71 -0.71 20.79 16 31 H 0.00 0.11 6.55 -2.38 -0.02 0.10 16 32 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.12 0.69 7.48 -2.39 -0.02 0.67 16 39 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.14 1.06 7.96 -2.39 -0.02 1.04 16 41 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 42 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 43 H 0.42 3.88 8.23 -92.71 -0.76 3.12 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 46 H 0.26 -1.19 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -91.67 389.00 1.13 -90.54 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.46 Total: 22.14 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 6.32 Total: 18.74 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -6.58 Total: -136.33 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.17 Total: -45.53 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -91.67 1.13 -90.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319130410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.739 kcal (2) G-P(sol) polarization free energy of solvation -91.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds