Wall clock time and date at job start Tue Mar 31 2020 18:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00173 * 2 1 4 4 H 1.48509 * 109.47154 * 269.99320 * 3 2 1 5 5 H 1.48496 * 109.47427 * 29.99452 * 3 2 1 6 6 H 1.48504 * 109.47191 * 149.99864 * 3 2 1 7 7 C 1.38812 * 119.99308 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00359 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99728 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00124 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46991 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47386 * 60.00653 * 11 10 9 13 13 O 1.42898 * 109.47520 * 299.99744 * 11 10 9 14 14 C 1.53002 * 109.46954 * 179.97438 * 11 10 9 15 15 N 1.46496 * 109.47425 * 185.00296 * 14 11 10 16 16 C 1.34777 * 120.00266 * 180.02562 * 15 14 11 17 17 O 1.21274 * 120.00135 * 0.27234 * 16 15 14 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46573 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.85515 * 269.73108 * 20 19 18 22 22 C 1.37959 * 120.14642 * 179.72014 * 21 20 19 23 23 C 1.39577 * 119.84929 * 0.54979 * 22 21 20 24 24 C 1.47845 * 120.13986 * 179.69962 * 23 22 21 25 25 N 1.34771 * 120.00206 * 0.02562 * 24 23 22 26 26 O 1.21557 * 119.99829 * 180.02562 * 24 23 22 27 27 C 1.39579 * 119.71201 * 359.72370 * 23 22 21 28 28 C 1.37953 * 119.85088 * 0.02562 * 27 23 22 29 29 H 0.97010 * 119.99744 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00279 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47097 * 59.99830 * 10 9 7 32 32 H 1.09008 * 109.47073 * 300.00178 * 10 9 7 33 33 H 0.96698 * 114.00197 * 300.00596 * 13 11 10 34 34 H 1.09004 * 109.46930 * 65.00118 * 14 11 10 35 35 H 1.09000 * 109.47312 * 305.00062 * 14 11 10 36 36 H 0.96999 * 119.99691 * 359.97438 * 15 14 11 37 37 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 38 38 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 39 39 H 1.09000 * 109.47486 * 299.99934 * 19 18 16 40 40 H 1.09001 * 109.47362 * 60.00657 * 19 18 16 41 41 H 1.08007 * 119.92634 * 359.97438 * 21 20 19 42 42 H 1.08002 * 120.07094 * 180.24665 * 22 21 20 43 43 H 0.96994 * 120.00320 * 0.02562 * 25 24 23 44 44 H 0.97000 * 119.99728 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.06763 * 179.97438 * 27 23 22 46 46 H 1.08003 * 119.92409 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0024 12 1 5.8789 -1.6205 0.8928 13 8 5.9624 -1.4418 -1.1638 14 6 6.3811 -3.5166 0.0030 15 7 7.8168 -3.2517 0.1247 16 6 8.6918 -4.2767 0.1464 17 8 8.2910 -5.4180 0.0602 18 6 10.1687 -4.0040 0.2710 19 6 10.9335 -5.3291 0.2717 20 6 12.4105 -5.0565 0.3957 21 6 13.1774 -4.8857 -0.7432 22 6 14.5289 -4.6302 -0.6366 23 6 15.1245 -4.5555 0.6235 24 6 16.5736 -4.2886 0.7451 25 7 17.3222 -4.1163 -0.3622 26 8 17.0897 -4.2245 1.8438 27 6 14.3462 -4.7344 1.7683 28 6 12.9948 -4.9841 1.6477 29 1 -0.4850 0.8402 -0.0004 30 1 3.8646 -0.3623 0.0014 31 1 3.8489 -3.0424 -0.8891 32 1 3.8482 -3.0429 0.8909 33 1 5.7563 -1.8902 -1.9953 34 1 6.1874 -4.0484 -0.9286 35 1 6.0516 -4.1260 0.8445 36 1 8.1377 -2.3386 0.1889 37 1 10.4979 -3.3945 -0.5706 38 1 10.3626 -3.4723 1.2026 39 1 10.6042 -5.9383 1.1135 40 1 10.7396 -5.8611 -0.6597 41 1 12.7161 -4.9486 -1.7178 42 1 15.1256 -4.4932 -1.5263 43 1 16.9104 -4.1670 -1.2389 44 1 18.2729 -3.9408 -0.2824 45 1 14.8012 -4.6782 2.7462 46 1 12.3916 -5.1231 2.5327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320247358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:19 Heat of formation + Delta-G solvation = -100.314999 kcal Electronic energy + Delta-G solvation = -26708.095823 eV Core-core repulsion = 22597.292104 eV Total energy + Delta-G solvation = -4110.803719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68160 -39.98505 -38.85706 -37.83558 -34.76770 -34.53607 -34.16762 -34.03184 -31.54655 -31.43824 -30.64422 -29.33422 -26.41176 -24.97132 -23.19891 -22.86334 -22.11039 -21.55383 -20.81337 -20.33729 -18.74125 -17.81474 -17.53005 -17.39108 -16.58784 -16.33684 -15.85364 -15.64429 -15.51832 -15.31843 -15.21993 -14.99059 -14.56640 -14.15632 -13.93511 -13.89955 -13.63123 -13.55760 -13.34353 -13.18367 -12.63081 -12.42713 -12.29413 -12.04678 -11.92964 -11.76951 -11.33211 -11.31316 -10.89789 -10.85986 -10.59312 -10.27700 -10.25009 -10.16904 -9.78985 -9.59039 -9.52429 -9.25950 -9.23723 -8.96042 -7.29195 -5.80673 -3.17096 0.29037 0.84762 2.32979 2.44977 2.94830 2.97157 3.34858 3.36978 3.41616 3.44438 4.12732 4.20521 4.32335 4.44522 4.48147 4.55842 4.57003 4.63797 4.66943 4.80775 4.87832 4.94913 5.08794 5.14905 5.27297 5.38642 5.41089 5.48035 5.51809 5.65214 5.71286 5.73259 5.75244 5.80355 5.81452 6.07462 6.20267 6.24347 6.35839 6.37789 6.50698 6.75539 7.31252 7.69935 7.72212 7.95163 8.03600 8.37778 9.17271 9.89142 10.08735 11.37314 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.001503 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.109248 B =18621.985788 C =19179.939325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.888 3.112 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.090 3.910 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.544 6.544 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.051 4.051 21 C -0.124 4.124 22 C -0.083 4.083 23 C -0.148 4.148 24 C 0.564 3.436 25 N -0.852 5.852 26 O -0.541 6.541 27 C -0.055 4.055 28 C -0.123 4.123 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.401 0.599 44 H 0.405 0.595 45 H 0.136 0.864 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.382 -10.102 -2.893 35.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.002 3.998 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.035 4.035 15 N -0.375 5.375 16 C 0.296 3.704 17 O -0.421 6.421 18 C -0.175 4.175 19 C -0.108 4.108 20 C -0.051 4.051 21 C -0.142 4.142 22 C -0.102 4.102 23 C -0.151 4.151 24 C 0.350 3.650 25 N -0.416 5.416 26 O -0.419 6.419 27 C -0.074 4.074 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.224 0.776 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.231 0.769 44 H 0.236 0.764 45 H 0.154 0.846 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 34.194 -10.567 -1.726 35.831 hybrid contribution 0.618 1.316 -0.833 1.675 sum 34.812 -9.251 -2.559 36.111 Atomic orbital electron populations 1.69713 1.05142 1.25934 1.57221 1.24673 0.95241 0.97319 1.01743 0.86493 0.79090 0.84703 0.77865 1.21009 1.21779 1.20317 1.19046 0.80510 0.94793 1.43567 0.89255 1.42559 1.03938 1.01989 1.91081 1.21170 0.88524 0.90323 0.99759 1.22446 0.94716 0.90805 0.89524 0.87825 1.86539 1.85985 1.47765 1.15941 1.22084 0.79841 0.98342 1.03213 1.45966 1.07029 1.09825 1.74648 1.20637 0.88517 0.85093 0.76121 1.90721 1.80332 1.21508 1.49543 1.21641 0.91501 0.99455 1.04906 1.20428 0.88836 0.96515 1.05035 1.20195 0.95965 0.95808 0.93163 1.21049 0.93473 1.00918 0.98743 1.21260 0.95289 0.97551 0.96082 1.19864 0.93104 1.07462 0.94644 1.18334 0.86819 0.75616 0.84201 1.43763 1.13089 1.75723 1.09011 1.90828 1.73868 1.50842 1.26355 1.21294 0.93262 0.94352 0.98479 1.21133 0.94630 1.00851 0.97509 0.92996 0.80028 0.95024 0.94502 0.77604 0.90889 0.90262 0.76056 0.88574 0.88584 0.89637 0.89680 0.85110 0.85625 0.76927 0.76381 0.84566 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 22.17 27.74 -169.99 -4.71 17.45 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 7 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.40 5.30 -59.91 -0.32 -17.72 16 10 C 0.13 2.32 5.92 -4.04 -0.02 2.30 16 11 C 0.08 1.14 3.08 -26.73 -0.08 1.05 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 O -0.56 -7.59 13.03 -35.23 -0.46 -8.05 16 14 C 0.09 1.02 5.31 -4.04 -0.02 1.00 16 15 N -0.72 -6.93 5.50 -60.29 -0.33 -7.26 16 16 C 0.51 5.15 7.83 -10.98 -0.09 5.07 16 17 O -0.54 -7.63 15.98 5.56 0.09 -7.54 16 18 C -0.14 -0.86 5.68 -27.88 -0.16 -1.02 16 19 C -0.07 -0.47 4.63 -27.88 -0.13 -0.60 16 20 C -0.05 -0.31 5.14 -104.53 -0.54 -0.85 16 21 C -0.12 -0.65 9.68 -39.64 -0.38 -1.04 16 22 C -0.08 -0.41 9.54 -39.18 -0.37 -0.78 16 23 C -0.15 -1.04 5.87 -104.97 -0.62 -1.66 16 24 C 0.56 4.48 8.05 -12.33 -0.10 4.38 16 25 N -0.85 -3.18 8.82 30.53 0.27 -2.91 16 26 O -0.54 -6.53 17.18 5.32 0.09 -6.44 16 27 C -0.06 -0.41 9.60 -39.19 -0.38 -0.78 16 28 C -0.12 -0.79 9.68 -39.64 -0.38 -1.18 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.37 8.48 5.40 -40.82 -0.22 8.26 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.38 4.19 9.05 45.56 0.41 4.60 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 40 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 41 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 42 H 0.13 0.23 6.41 -52.49 -0.34 -0.11 16 43 H 0.40 0.36 6.86 -40.82 -0.28 0.08 16 44 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 45 H 0.14 1.03 7.65 -52.49 -0.40 0.63 16 46 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -38.09 392.58 -7.98 -46.07 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.77 Total: 10.07 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.53 Total: -1.18 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.40 Total: -56.29 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.28 Total: -22.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.09 -7.98 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320247358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.246 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds