Wall clock time and date at job start Tue Mar 31 2020 18:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00173 * 2 1 4 4 H 1.48509 * 109.47154 * 269.99320 * 3 2 1 5 5 H 1.48496 * 109.47427 * 29.99452 * 3 2 1 6 6 H 1.48504 * 109.47191 * 149.99864 * 3 2 1 7 7 C 1.38812 * 119.99308 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00359 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99728 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00124 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46991 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47386 * 60.00653 * 11 10 9 13 13 O 1.42898 * 109.47520 * 299.99744 * 11 10 9 14 14 C 1.53002 * 109.46954 * 179.97438 * 11 10 9 15 15 N 1.46496 * 109.47425 * 185.00296 * 14 11 10 16 16 C 1.34777 * 120.00266 * 180.02562 * 15 14 11 17 17 O 1.21274 * 120.00135 * 0.27234 * 16 15 14 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46573 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.85515 * 269.73108 * 20 19 18 22 22 C 1.37959 * 120.14642 * 179.72014 * 21 20 19 23 23 C 1.39577 * 119.84929 * 0.54979 * 22 21 20 24 24 C 1.47845 * 120.13986 * 179.69962 * 23 22 21 25 25 N 1.34771 * 120.00206 * 0.02562 * 24 23 22 26 26 O 1.21557 * 119.99829 * 180.02562 * 24 23 22 27 27 C 1.39579 * 119.71201 * 359.72370 * 23 22 21 28 28 C 1.37953 * 119.85088 * 0.02562 * 27 23 22 29 29 H 0.97010 * 119.99744 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00279 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47097 * 59.99830 * 10 9 7 32 32 H 1.09008 * 109.47073 * 300.00178 * 10 9 7 33 33 H 0.96698 * 114.00197 * 300.00596 * 13 11 10 34 34 H 1.09004 * 109.46930 * 65.00118 * 14 11 10 35 35 H 1.09000 * 109.47312 * 305.00062 * 14 11 10 36 36 H 0.96999 * 119.99691 * 359.97438 * 15 14 11 37 37 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 38 38 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 39 39 H 1.09000 * 109.47486 * 299.99934 * 19 18 16 40 40 H 1.09001 * 109.47362 * 60.00657 * 19 18 16 41 41 H 1.08007 * 119.92634 * 359.97438 * 21 20 19 42 42 H 1.08002 * 120.07094 * 180.24665 * 22 21 20 43 43 H 0.96994 * 120.00320 * 0.02562 * 25 24 23 44 44 H 0.97000 * 119.99728 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.06763 * 179.97438 * 27 23 22 46 46 H 1.08003 * 119.92409 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0024 12 1 5.8789 -1.6205 0.8928 13 8 5.9624 -1.4418 -1.1638 14 6 6.3811 -3.5166 0.0030 15 7 7.8168 -3.2517 0.1247 16 6 8.6918 -4.2767 0.1464 17 8 8.2910 -5.4180 0.0602 18 6 10.1687 -4.0040 0.2710 19 6 10.9335 -5.3291 0.2717 20 6 12.4105 -5.0565 0.3957 21 6 13.1774 -4.8857 -0.7432 22 6 14.5289 -4.6302 -0.6366 23 6 15.1245 -4.5555 0.6235 24 6 16.5736 -4.2886 0.7451 25 7 17.3222 -4.1163 -0.3622 26 8 17.0897 -4.2245 1.8438 27 6 14.3462 -4.7344 1.7683 28 6 12.9948 -4.9841 1.6477 29 1 -0.4850 0.8402 -0.0004 30 1 3.8646 -0.3623 0.0014 31 1 3.8489 -3.0424 -0.8891 32 1 3.8482 -3.0429 0.8909 33 1 5.7563 -1.8902 -1.9953 34 1 6.1874 -4.0484 -0.9286 35 1 6.0516 -4.1260 0.8445 36 1 8.1377 -2.3386 0.1889 37 1 10.4979 -3.3945 -0.5706 38 1 10.3626 -3.4723 1.2026 39 1 10.6042 -5.9383 1.1135 40 1 10.7396 -5.8611 -0.6597 41 1 12.7161 -4.9486 -1.7178 42 1 15.1256 -4.4932 -1.5263 43 1 16.9104 -4.1670 -1.2389 44 1 18.2729 -3.9408 -0.2824 45 1 14.8012 -4.6782 2.7462 46 1 12.3916 -5.1231 2.5327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320247358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:18 Heat of formation + Delta-G solvation = -133.241606 kcal Electronic energy + Delta-G solvation = -26709.523628 eV Core-core repulsion = 22597.292104 eV Total energy + Delta-G solvation = -4112.231524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21627 -40.78574 -39.44616 -38.94741 -36.19339 -35.33715 -35.20850 -34.53584 -33.47949 -31.86746 -31.44983 -30.41639 -27.53908 -25.95658 -24.07095 -23.62248 -23.11881 -22.82496 -21.39709 -21.07911 -19.78955 -19.18329 -18.33989 -17.88714 -17.65004 -17.25975 -16.58367 -16.50442 -16.29169 -16.11534 -16.03190 -15.84912 -15.66230 -15.42423 -15.03647 -14.70504 -14.54521 -14.38883 -14.21552 -14.14576 -13.80498 -13.75391 -13.33195 -13.12411 -12.81252 -12.78876 -12.44996 -12.23660 -12.23223 -11.87830 -11.83305 -11.78074 -11.22531 -11.18358 -11.02150 -10.80311 -10.75731 -10.09281 -9.95017 -9.74092 -9.31967 -8.03902 -5.37745 -0.19291 0.42113 1.39829 1.42791 1.50298 1.68206 1.79066 2.18976 2.48500 2.53317 2.86640 3.26962 3.35657 3.55087 3.63226 3.81424 3.88674 3.99608 4.02625 4.04733 4.10388 4.17319 4.22076 4.35548 4.43789 4.52182 4.61640 4.67392 4.79385 4.84938 4.92208 4.92649 5.10279 5.18322 5.21219 5.29215 5.38137 5.43189 5.62528 5.73454 5.83034 5.92868 6.19505 6.39607 6.57412 6.76977 7.07471 7.25896 7.28302 7.82688 8.02139 9.17359 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.001503 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.109248 B =18621.985788 C =19179.939325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.240 4.240 8 H 0.056 0.944 9 N -0.752 5.752 10 C 0.122 3.878 11 C 0.106 3.894 12 H 0.109 0.891 13 O -0.563 6.563 14 C 0.100 3.900 15 N -0.715 5.715 16 C 0.509 3.491 17 O -0.587 6.587 18 C -0.126 4.126 19 C -0.065 4.065 20 C -0.052 4.052 21 C -0.124 4.124 22 C -0.074 4.074 23 C -0.162 4.162 24 C 0.559 3.441 25 N -0.830 5.830 26 O -0.594 6.594 27 C -0.073 4.073 28 C -0.128 4.128 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.388 0.612 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.417 0.583 44 H 0.412 0.588 45 H 0.123 0.877 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.978 -9.124 -4.369 38.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.398 5.398 10 C -0.005 4.005 11 C 0.046 3.954 12 H 0.127 0.873 13 O -0.370 6.370 14 C -0.025 4.025 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.467 6.467 18 C -0.165 4.165 19 C -0.103 4.103 20 C -0.052 4.052 21 C -0.142 4.142 22 C -0.092 4.092 23 C -0.165 4.165 24 C 0.346 3.654 25 N -0.394 5.394 26 O -0.476 6.476 27 C -0.092 4.092 28 C -0.146 4.146 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.250 0.750 44 H 0.244 0.756 45 H 0.141 0.859 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 36.858 -9.596 -3.259 38.225 hybrid contribution -0.206 0.878 -0.437 1.002 sum 36.651 -8.718 -3.695 37.855 Atomic orbital electron populations 1.69895 1.07199 1.26776 1.59465 1.25523 0.96109 1.01381 1.02401 0.85339 0.78471 0.79365 0.78109 1.20463 1.22316 1.17700 1.19051 0.82776 0.93508 1.41720 0.92586 1.42532 1.02281 1.04088 1.90937 1.21409 0.91296 0.88122 0.99643 1.22133 0.91558 0.91764 0.89911 0.87288 1.86517 1.85746 1.48218 1.16503 1.21807 0.80910 0.96867 1.02938 1.45870 1.06089 1.10529 1.74195 1.21270 0.89906 0.84284 0.74819 1.90710 1.81228 1.23255 1.51552 1.21651 0.88411 0.99710 1.06739 1.20336 0.89164 0.96522 1.04280 1.20190 0.95686 0.95967 0.93385 1.21339 0.93556 0.99992 0.99319 1.21574 0.95505 0.95921 0.96225 1.19944 0.92687 1.08315 0.95532 1.18583 0.87441 0.75156 0.84245 1.43601 1.13295 1.73685 1.08816 1.90800 1.74808 1.53600 1.28412 1.21320 0.93918 0.95566 0.98430 1.21212 0.94284 1.00913 0.98218 0.93289 0.79674 0.94759 0.94592 0.76279 0.91045 0.90937 0.74703 0.86255 0.86877 0.90892 0.90137 0.82950 0.82252 0.74988 0.75588 0.85893 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.81 13.97 21.65 0.30 -62.50 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.96 45.30 27.74 68.60 1.90 47.20 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16 7 C -0.24 -13.56 10.47 84.03 0.88 -12.68 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 N -0.75 -33.92 5.30 -343.44 -1.82 -35.74 16 10 C 0.12 4.19 5.92 86.38 0.51 4.70 16 11 C 0.11 2.58 3.08 30.59 0.09 2.68 16 12 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 13 O -0.56 -13.58 13.03 -148.98 -1.94 -15.52 16 14 C 0.10 2.08 5.31 86.38 0.46 2.54 16 15 N -0.71 -11.79 5.50 -463.06 -2.55 -14.34 16 16 C 0.51 9.18 7.83 87.66 0.69 9.87 16 17 O -0.59 -15.84 15.98 -3.01 -0.05 -15.89 16 18 C -0.13 -1.23 5.68 29.85 0.17 -1.06 16 19 C -0.07 -0.74 4.63 29.85 0.14 -0.60 16 20 C -0.05 -0.53 5.14 -19.81 -0.10 -0.63 16 21 C -0.12 -0.92 9.68 22.23 0.22 -0.70 16 22 C -0.07 -0.51 9.54 22.53 0.21 -0.29 16 23 C -0.16 -2.09 5.87 -20.09 -0.12 -2.21 16 24 C 0.56 8.54 8.05 86.79 0.70 9.24 16 25 N -0.83 -4.64 8.82 -175.61 -1.55 -6.19 16 26 O -0.59 -14.83 17.18 -3.90 -0.07 -14.90 16 27 C -0.07 -1.09 9.60 22.53 0.22 -0.87 16 28 C -0.13 -1.54 9.68 22.23 0.22 -1.33 16 29 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 30 H 0.37 16.13 5.40 -92.71 -0.50 15.63 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.39 7.51 9.05 -74.06 -0.67 6.84 16 34 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.42 5.11 8.47 -92.71 -0.79 4.33 16 37 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 40 H 0.08 1.00 8.03 -2.39 -0.02 0.98 16 41 H 0.15 0.48 8.06 -2.91 -0.02 0.45 16 42 H 0.16 -0.11 6.41 -2.91 -0.02 -0.13 16 43 H 0.42 -0.54 6.86 -92.71 -0.64 -1.17 16 44 H 0.41 1.54 8.93 -92.71 -0.83 0.71 16 45 H 0.12 2.06 7.65 -2.91 -0.02 2.04 16 46 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -84.75 392.58 -3.44 -88.19 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -2.41 Total: 24.25 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 4.75 Total: 5.44 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -5.61 Total: -118.77 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.06 Total: -46.31 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -84.75 -3.44 -88.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320247358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.055 kcal (2) G-P(sol) polarization free energy of solvation -84.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds