Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48503 * 109.46858 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.47071 * 30.00107 * 3 2 1 6 6 H 1.48495 * 109.46876 * 150.00253 * 3 2 1 7 7 C 1.37872 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99918 * 175.18489 * 7 2 1 9 9 C 1.50702 * 120.00252 * 355.45462 * 7 2 1 10 10 C 1.52999 * 115.55043 * 273.42114 * 9 7 2 11 11 N 1.46498 * 109.47104 * 294.44768 * 10 9 7 12 12 C 1.34777 * 119.99606 * 184.74676 * 11 10 9 13 13 O 1.21281 * 120.00354 * 5.03467 * 12 11 10 14 14 C 1.50711 * 119.99644 * 185.02634 * 12 11 10 15 15 C 1.53008 * 109.46708 * 301.78870 * 14 12 11 16 16 C 1.53084 * 109.41606 * 179.50665 * 15 14 12 17 17 C 1.52460 * 109.58893 * 59.14664 * 16 15 14 18 18 C 1.52469 * 110.75216 * 301.44210 * 17 16 15 19 19 C 1.53012 * 109.46681 * 181.75915 * 14 12 11 20 20 N 1.46870 * 110.48059 * 178.69451 * 17 16 15 21 21 C 1.34672 * 106.42570 * 241.44557 * 20 17 16 22 22 O 1.21540 * 123.78823 * 179.97438 * 21 20 17 23 23 N 1.33865 * 112.41997 * 0.02562 * 21 20 17 24 24 C 1.34919 * 111.61346 * 359.97438 * 23 21 20 25 25 O 1.21229 * 127.25710 * 180.02562 * 24 23 21 26 26 C 1.52995 * 117.49876 * 127.74886 * 9 7 2 27 27 C 1.52996 * 117.49706 * 59.08854 * 9 7 2 28 28 H 0.97002 * 119.99650 * 5.00013 * 1 2 3 29 29 H 1.08998 * 109.47082 * 54.45095 * 10 9 7 30 30 H 1.09004 * 109.47152 * 174.44880 * 10 9 7 31 31 H 0.96990 * 120.00058 * 4.75206 * 11 10 9 32 32 H 1.09001 * 109.46246 * 61.77281 * 14 12 11 33 33 H 1.09003 * 109.48171 * 299.48749 * 15 14 12 34 34 H 1.09003 * 109.48381 * 59.51991 * 15 14 12 35 35 H 1.08996 * 109.45271 * 299.10401 * 16 15 14 36 36 H 1.09006 * 109.44367 * 179.18190 * 16 15 14 37 37 H 1.09003 * 109.45360 * 298.52356 * 18 17 16 38 38 H 1.09002 * 109.45531 * 178.59763 * 18 17 16 39 39 H 1.09006 * 109.47983 * 300.48182 * 19 14 12 40 40 H 1.08999 * 109.48271 * 60.50980 * 19 14 12 41 41 H 0.97000 * 126.78126 * 61.46606 * 20 17 16 42 42 H 0.96999 * 124.19291 * 180.02562 * 23 21 20 43 43 H 1.08999 * 117.49870 * 0.02562 * 26 9 7 44 44 H 1.08997 * 117.50265 * 145.02417 * 26 9 7 45 45 H 1.09003 * 117.49988 * 214.98224 * 27 9 7 46 46 H 1.09000 * 117.49915 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0790 9 6 1.2546 -2.4972 0.1023 10 6 0.9495 -2.9725 1.5242 11 7 2.2034 -3.2869 2.2136 12 6 2.1766 -3.8177 3.4521 13 8 1.1174 -4.1199 3.9597 14 6 3.4631 -4.0359 4.2063 15 6 4.3809 -4.9523 3.3946 16 6 5.6921 -5.1633 4.1560 17 6 5.3987 -5.7858 5.5164 18 6 4.4642 -4.8953 6.3278 19 6 3.1581 -4.6855 5.5577 20 7 6.6472 -6.0255 6.2518 21 6 6.7193 -7.3546 6.4567 22 8 7.6350 -7.8997 7.0412 23 7 5.6697 -8.0080 5.9434 24 6 4.8014 -7.1640 5.3485 25 8 3.7612 -7.4505 4.7958 26 6 1.5477 -3.5661 -0.9523 27 6 0.2203 -2.8045 -0.9824 28 1 -0.4850 0.8369 -0.0732 29 1 0.4246 -2.1855 2.0657 30 1 0.3241 -3.8644 1.4829 31 1 3.0527 -3.1130 1.7787 32 1 3.9568 -3.0775 4.3671 33 1 3.8910 -5.9139 3.2411 34 1 4.5913 -4.4931 2.4286 35 1 6.1892 -4.2034 4.2956 36 1 6.3405 -5.8278 3.5848 37 1 4.9418 -3.9311 6.5019 38 1 4.2490 -5.3713 7.2845 39 1 2.4975 -4.0362 6.1323 40 1 2.6722 -5.6479 5.3970 41 1 7.2921 -5.3583 6.5344 42 1 5.5482 -8.9690 5.9937 43 1 2.2834 -3.3270 -1.7203 44 1 1.5229 -4.6080 -0.6333 45 1 -0.6773 -3.3457 -0.6832 46 1 0.0820 -2.0639 -1.7702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321277304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -73.329103 kcal Electronic energy + Delta-G solvation = -29696.078742 eV Core-core repulsion = 25586.445219 eV Total energy + Delta-G solvation = -4109.633523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.04367 -39.82620 -38.91849 -37.56243 -36.69486 -36.02304 -33.79706 -33.33216 -31.98575 -31.23374 -30.12555 -26.51337 -25.40534 -24.60402 -23.18642 -23.10726 -22.42923 -21.15840 -20.09787 -19.55963 -19.14389 -18.68947 -17.09721 -16.99143 -16.94594 -16.26637 -16.04647 -15.77944 -15.42297 -15.07863 -14.80509 -14.67078 -14.30140 -14.00700 -13.86125 -13.44266 -13.20799 -13.02322 -12.88555 -12.59696 -12.56876 -11.84462 -11.73959 -11.61635 -11.47800 -11.21009 -11.03130 -11.02405 -10.96521 -10.80236 -10.66972 -10.56388 -10.24430 -10.09438 -9.79232 -9.59926 -9.22325 -9.07268 -8.51568 -8.25894 -8.10673 -6.10516 -4.20821 1.26140 2.05750 2.63794 2.73808 3.17999 3.21985 3.30378 3.30851 3.54619 3.80748 4.12888 4.16887 4.31436 4.70699 4.71362 4.81196 4.98859 5.03689 5.11069 5.16749 5.21924 5.34446 5.39525 5.50542 5.55306 5.62157 5.68477 5.90332 5.92494 6.03623 6.13925 6.29534 6.33376 6.35959 6.47129 6.54819 6.56324 6.70002 6.86067 7.07552 7.11435 7.27701 7.37606 7.53149 7.76509 7.77338 8.28525 8.31248 8.80162 8.87365 9.46363 10.96377 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002736 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.663242 B =10229.987604 C =10694.229784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.509 3.491 13 O -0.554 6.554 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.121 3.879 18 C -0.111 4.111 19 C -0.106 4.106 20 N -0.718 5.718 21 C 0.705 3.295 22 O -0.549 6.549 23 N -0.683 5.683 24 C 0.530 3.470 25 O -0.444 6.444 26 C -0.211 4.211 27 C -0.141 4.141 28 H 0.261 0.739 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.441 0.559 42 H 0.431 0.569 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.840 -10.207 10.876 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.040 3.960 11 N -0.352 5.352 12 C 0.295 3.705 13 O -0.433 6.433 14 C -0.126 4.126 15 C -0.158 4.158 16 C -0.148 4.148 17 C 0.030 3.970 18 C -0.150 4.150 19 C -0.144 4.144 20 N -0.382 5.382 21 C 0.405 3.595 22 O -0.423 6.423 23 N -0.355 5.355 24 C 0.315 3.685 25 O -0.311 6.311 26 C -0.249 4.249 27 C -0.179 4.179 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.234 0.766 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.285 0.715 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.792 -10.631 11.283 19.477 hybrid contribution 1.045 0.962 -0.171 1.431 sum 12.837 -9.669 11.112 19.538 Atomic orbital electron populations 1.69997 1.05887 1.26864 1.48286 1.24995 0.94817 0.98962 0.94345 0.86630 0.79894 0.83584 0.78113 1.20715 1.21193 1.19797 1.20340 0.92586 0.88591 1.52241 0.92236 1.19040 0.99447 0.93363 0.85865 1.20996 0.83845 0.97675 0.93533 1.45989 1.11122 1.62191 1.15908 1.20348 0.90463 0.77660 0.82079 1.90659 1.32372 1.51769 1.68534 1.21320 0.94968 1.00557 0.95801 1.21689 0.93864 1.01689 0.98602 1.21666 0.99100 1.02099 0.91907 1.21216 0.85448 0.94791 0.95524 1.21712 0.95609 0.99488 0.98162 1.21465 0.95407 1.03461 0.94103 1.45617 1.24928 1.07033 1.60595 1.15909 0.81929 0.82689 0.79002 1.91058 1.35219 1.70523 1.45451 1.44449 1.22973 1.12984 1.55079 1.20672 0.83361 0.87584 0.76851 1.90870 1.20132 1.81449 1.38620 1.23020 1.01027 0.95578 1.05229 1.22454 0.90648 1.01181 1.03650 0.92864 0.91653 0.94135 0.76615 0.88429 0.89535 0.89889 0.89123 0.90439 0.89368 0.90583 0.89975 0.89400 0.71475 0.72652 0.90444 0.91737 0.91866 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.75 12.54 55.43 0.70 -23.05 16 2 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.89 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.50 -12.42 8.62 -34.44 -0.30 -12.72 16 8 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 9 C 0.02 0.54 1.50 -155.66 -0.23 0.30 16 10 C 0.16 3.57 5.53 -4.04 -0.02 3.55 16 11 N -0.70 -12.76 5.39 -60.29 -0.33 -13.09 16 12 C 0.51 8.77 7.17 -10.98 -0.08 8.69 16 13 O -0.55 -11.72 15.96 5.56 0.09 -11.63 16 14 C -0.11 -1.23 2.53 -91.76 -0.23 -1.46 16 15 C -0.12 -1.19 4.84 -26.68 -0.13 -1.31 16 16 C -0.11 -0.76 5.10 -26.96 -0.14 -0.89 16 17 C 0.12 0.88 1.01 -133.10 -0.13 0.75 16 18 C -0.11 -0.82 5.10 -26.97 -0.14 -0.96 16 19 C -0.11 -1.17 4.25 -26.69 -0.11 -1.28 16 20 N -0.72 -4.51 5.88 -53.87 -0.32 -4.83 16 21 C 0.71 6.30 9.00 -87.83 -0.79 5.51 16 22 O -0.55 -6.78 18.04 5.33 0.10 -6.68 16 23 N -0.68 -5.39 5.72 -15.85 -0.09 -5.48 16 24 C 0.53 4.94 7.02 -10.71 -0.08 4.87 16 25 O -0.44 -5.50 14.11 5.60 0.08 -5.42 16 26 C -0.21 -4.32 9.96 -26.70 -0.27 -4.58 16 27 C -0.14 -3.20 9.06 -26.70 -0.24 -3.44 16 28 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 29 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 31 H 0.40 6.53 7.51 -40.82 -0.31 6.22 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.03 6.11 -51.93 -0.32 0.71 16 34 H 0.08 0.78 7.35 -51.93 -0.38 0.39 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.09 1.18 6.10 -51.93 -0.32 0.86 16 41 H 0.44 1.79 8.96 -40.82 -0.37 1.43 16 42 H 0.43 2.65 8.96 -40.82 -0.37 2.28 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 2.12 8.10 -51.93 -0.42 1.70 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.49 373.24 -8.82 -41.31 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.66 Total: 9.56 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.98 Total: -1.20 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.04 Total: -46.45 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.26 Total: -23.73 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.49 -8.82 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321277304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.024 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds