Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48503 * 109.46858 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.47071 * 30.00107 * 3 2 1 6 6 H 1.48495 * 109.46876 * 150.00253 * 3 2 1 7 7 C 1.37872 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99918 * 175.18489 * 7 2 1 9 9 C 1.50702 * 120.00252 * 355.45462 * 7 2 1 10 10 C 1.52999 * 115.55043 * 273.42114 * 9 7 2 11 11 N 1.46498 * 109.47104 * 294.44768 * 10 9 7 12 12 C 1.34777 * 119.99606 * 184.74676 * 11 10 9 13 13 O 1.21281 * 120.00354 * 5.03467 * 12 11 10 14 14 C 1.50711 * 119.99644 * 185.02634 * 12 11 10 15 15 C 1.53008 * 109.46708 * 301.78870 * 14 12 11 16 16 C 1.53084 * 109.41606 * 179.50665 * 15 14 12 17 17 C 1.52460 * 109.58893 * 59.14664 * 16 15 14 18 18 C 1.52469 * 110.75216 * 301.44210 * 17 16 15 19 19 C 1.53012 * 109.46681 * 181.75915 * 14 12 11 20 20 N 1.46870 * 110.48059 * 178.69451 * 17 16 15 21 21 C 1.34672 * 106.42570 * 241.44557 * 20 17 16 22 22 O 1.21540 * 123.78823 * 179.97438 * 21 20 17 23 23 N 1.33865 * 112.41997 * 0.02562 * 21 20 17 24 24 C 1.34919 * 111.61346 * 359.97438 * 23 21 20 25 25 O 1.21229 * 127.25710 * 180.02562 * 24 23 21 26 26 C 1.52995 * 117.49876 * 127.74886 * 9 7 2 27 27 C 1.52996 * 117.49706 * 59.08854 * 9 7 2 28 28 H 0.97002 * 119.99650 * 5.00013 * 1 2 3 29 29 H 1.08998 * 109.47082 * 54.45095 * 10 9 7 30 30 H 1.09004 * 109.47152 * 174.44880 * 10 9 7 31 31 H 0.96990 * 120.00058 * 4.75206 * 11 10 9 32 32 H 1.09001 * 109.46246 * 61.77281 * 14 12 11 33 33 H 1.09003 * 109.48171 * 299.48749 * 15 14 12 34 34 H 1.09003 * 109.48381 * 59.51991 * 15 14 12 35 35 H 1.08996 * 109.45271 * 299.10401 * 16 15 14 36 36 H 1.09006 * 109.44367 * 179.18190 * 16 15 14 37 37 H 1.09003 * 109.45360 * 298.52356 * 18 17 16 38 38 H 1.09002 * 109.45531 * 178.59763 * 18 17 16 39 39 H 1.09006 * 109.47983 * 300.48182 * 19 14 12 40 40 H 1.08999 * 109.48271 * 60.50980 * 19 14 12 41 41 H 0.97000 * 126.78126 * 61.46606 * 20 17 16 42 42 H 0.96999 * 124.19291 * 180.02562 * 23 21 20 43 43 H 1.08999 * 117.49870 * 0.02562 * 26 9 7 44 44 H 1.08997 * 117.50265 * 145.02417 * 26 9 7 45 45 H 1.09003 * 117.49988 * 214.98224 * 27 9 7 46 46 H 1.09000 * 117.49915 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0790 9 6 1.2546 -2.4972 0.1023 10 6 0.9495 -2.9725 1.5242 11 7 2.2034 -3.2869 2.2136 12 6 2.1766 -3.8177 3.4521 13 8 1.1174 -4.1199 3.9597 14 6 3.4631 -4.0359 4.2063 15 6 4.3809 -4.9523 3.3946 16 6 5.6921 -5.1633 4.1560 17 6 5.3987 -5.7858 5.5164 18 6 4.4642 -4.8953 6.3278 19 6 3.1581 -4.6855 5.5577 20 7 6.6472 -6.0255 6.2518 21 6 6.7193 -7.3546 6.4567 22 8 7.6350 -7.8997 7.0412 23 7 5.6697 -8.0080 5.9434 24 6 4.8014 -7.1640 5.3485 25 8 3.7612 -7.4505 4.7958 26 6 1.5477 -3.5661 -0.9523 27 6 0.2203 -2.8045 -0.9824 28 1 -0.4850 0.8369 -0.0732 29 1 0.4246 -2.1855 2.0657 30 1 0.3241 -3.8644 1.4829 31 1 3.0527 -3.1130 1.7787 32 1 3.9568 -3.0775 4.3671 33 1 3.8910 -5.9139 3.2411 34 1 4.5913 -4.4931 2.4286 35 1 6.1892 -4.2034 4.2956 36 1 6.3405 -5.8278 3.5848 37 1 4.9418 -3.9311 6.5019 38 1 4.2490 -5.3713 7.2845 39 1 2.4975 -4.0362 6.1323 40 1 2.6722 -5.6479 5.3970 41 1 7.2921 -5.3583 6.5344 42 1 5.5482 -8.9690 5.9937 43 1 2.2834 -3.3270 -1.7203 44 1 1.5229 -4.6080 -0.6333 45 1 -0.6773 -3.3457 -0.6832 46 1 0.0820 -2.0639 -1.7702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321277304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -98.431639 kcal Electronic energy + Delta-G solvation = -29697.167270 eV Core-core repulsion = 25586.445219 eV Total energy + Delta-G solvation = -4110.722050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.73191 -41.00047 -39.87672 -38.67706 -38.14724 -36.90603 -34.97600 -34.45482 -33.91287 -31.95802 -30.97127 -28.15191 -27.13220 -25.54355 -23.87315 -23.80683 -23.38791 -22.87815 -21.33061 -21.02870 -20.33033 -19.39106 -18.44859 -17.74326 -17.72506 -17.63178 -17.04485 -16.69199 -16.57618 -16.53275 -16.22070 -15.67585 -15.54171 -15.50685 -14.76366 -14.56003 -14.52025 -14.05410 -13.92425 -13.69243 -13.48531 -13.32297 -13.27635 -12.90660 -12.78727 -12.70725 -12.32738 -12.20099 -12.06232 -12.01407 -11.86536 -11.58096 -11.42653 -11.35575 -10.93186 -10.84435 -10.71473 -10.42607 -10.40748 -9.98445 -9.78458 -8.05961 -6.20975 0.53898 1.43913 1.45946 1.48494 1.56690 1.81562 1.94158 2.11552 2.41844 2.47873 2.89649 3.21883 3.46062 3.50091 3.54771 3.85157 3.91355 4.04329 4.22862 4.26830 4.29115 4.44448 4.50476 4.56889 4.66349 4.67700 4.75871 4.76388 4.86554 5.00301 5.00715 5.02944 5.06601 5.14138 5.16236 5.29908 5.32276 5.44168 5.58107 5.64529 5.74818 5.81192 5.83379 5.88859 6.39328 6.41971 6.84054 6.88978 7.13762 7.46983 7.49585 9.00872 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002736 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.663242 B =10229.987604 C =10694.229784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.502 4.502 8 H 0.069 0.931 9 C 0.007 3.993 10 C 0.179 3.821 11 N -0.699 5.699 12 C 0.503 3.497 13 O -0.600 6.600 14 C -0.094 4.094 15 C -0.117 4.117 16 C -0.103 4.103 17 C 0.128 3.872 18 C -0.102 4.102 19 C -0.104 4.104 20 N -0.694 5.694 21 C 0.707 3.293 22 O -0.583 6.583 23 N -0.677 5.677 24 C 0.527 3.473 25 O -0.480 6.480 26 C -0.178 4.178 27 C -0.157 4.157 28 H 0.258 0.742 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.411 0.589 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.455 0.545 42 H 0.437 0.563 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.309 -9.630 11.431 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.181 1.181 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.006 3.994 10 C 0.054 3.946 11 N -0.348 5.348 12 C 0.291 3.709 13 O -0.482 6.482 14 C -0.115 4.115 15 C -0.155 4.155 16 C -0.141 4.141 17 C 0.037 3.963 18 C -0.141 4.141 19 C -0.143 4.143 20 N -0.359 5.359 21 C 0.406 3.594 22 O -0.459 6.459 23 N -0.348 5.348 24 C 0.313 3.687 25 O -0.349 6.349 26 C -0.215 4.215 27 C -0.195 4.195 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.302 0.698 42 H 0.280 0.720 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.324 -10.046 11.838 21.815 hybrid contribution -0.112 0.715 -0.351 0.804 sum 15.212 -9.331 11.487 21.223 Atomic orbital electron populations 1.70139 1.07427 1.27260 1.50008 1.25749 0.95455 1.02247 0.94412 0.85655 0.79092 0.79516 0.77992 1.20575 1.22100 1.18094 1.20683 0.93116 0.89273 1.50901 0.91310 1.19077 0.99891 0.94044 0.86395 1.20523 0.85244 0.95751 0.93093 1.45869 1.10171 1.62387 1.16407 1.21432 0.92046 0.75921 0.81501 1.90637 1.34795 1.53374 1.69371 1.21372 0.92176 1.02647 0.95326 1.21645 0.94702 0.99920 0.99258 1.21684 0.97519 1.04030 0.90852 1.21158 0.85535 0.93440 0.96167 1.21673 0.93683 1.01201 0.97510 1.21382 0.97192 1.01535 0.94153 1.45456 1.24540 1.06272 1.59585 1.15960 0.81458 0.83334 0.78624 1.91047 1.36501 1.71293 1.47083 1.44422 1.22514 1.13457 1.54404 1.21051 0.82854 0.88677 0.76105 1.90869 1.21671 1.82160 1.40210 1.22994 0.99077 0.95840 1.03568 1.22370 0.91905 1.01746 1.03460 0.93322 0.95642 0.95161 0.75253 0.85281 0.92005 0.88945 0.85741 0.89436 0.86010 0.90066 0.91164 0.92352 0.69752 0.72007 0.89487 0.89767 0.91738 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.59 12.54 21.45 0.27 -50.32 16 2 C 0.02 1.12 5.43 84.65 0.46 1.58 16 3 Si 0.95 40.44 29.54 68.60 2.03 42.47 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -24.56 8.62 25.60 0.22 -24.34 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.30 1.50 -52.93 -0.08 0.22 16 10 C 0.18 8.01 5.53 86.38 0.48 8.49 16 11 N -0.70 -24.98 5.39 -463.05 -2.50 -27.48 16 12 C 0.50 17.20 7.17 87.66 0.63 17.83 16 13 O -0.60 -26.20 15.96 -3.03 -0.05 -26.25 16 14 C -0.09 -2.00 2.53 -11.53 -0.03 -2.03 16 15 C -0.12 -1.99 4.84 30.62 0.15 -1.85 16 16 C -0.10 -0.99 5.10 30.44 0.16 -0.83 16 17 C 0.13 1.45 1.01 2.57 0.00 1.45 16 18 C -0.10 -1.17 5.10 30.44 0.16 -1.01 16 19 C -0.10 -2.16 4.25 30.62 0.13 -2.03 16 20 N -0.69 -6.16 5.88 -442.69 -2.60 -8.76 16 21 C 0.71 11.03 9.00 179.37 1.61 12.65 16 22 O -0.58 -13.43 18.04 -3.84 -0.07 -13.50 16 23 N -0.68 -9.75 5.72 -441.19 -2.52 -12.27 16 24 C 0.53 9.10 7.02 87.77 0.62 9.71 16 25 O -0.48 -11.91 14.11 -2.87 -0.04 -11.95 16 26 C -0.18 -7.00 9.96 30.62 0.30 -6.70 16 27 C -0.16 -7.19 9.06 30.62 0.28 -6.91 16 28 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 1.39 8.05 -2.39 -0.02 1.37 16 31 H 0.41 12.66 7.51 -92.72 -0.70 11.96 16 32 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.41 6.11 -2.39 -0.01 1.39 16 34 H 0.09 1.42 7.35 -2.39 -0.02 1.40 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 40 H 0.06 1.58 6.10 -2.39 -0.01 1.57 16 41 H 0.45 1.64 8.96 -92.71 -0.83 0.81 16 42 H 0.44 5.05 8.96 -92.71 -0.83 4.22 16 43 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.06 3.25 8.10 -2.39 -0.02 3.23 16 Total: -1.00 -73.84 373.24 -1.72 -75.56 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -1.31 Total: 26.27 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.08 Total: 6.24 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -7.35 Total: -98.84 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.16 Total: -51.70 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -73.84 -1.72 -75.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321277304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.876 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds