Wall clock time and date at job start Tue Mar 31 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47125 * 179.97438 * 21 20 19 23 23 N 1.46498 * 109.47037 * 180.02562 * 22 21 20 24 24 C 1.34777 * 119.99835 * 180.02562 * 23 22 21 25 25 N 1.34776 * 119.99612 * 180.02562 * 24 23 22 26 26 O 1.21586 * 119.99913 * 359.97438 * 24 23 22 27 27 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 31 31 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 32 32 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 33 33 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 34 34 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 35 35 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 36 36 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 37 37 H 1.09001 * 109.47096 * 299.99644 * 20 19 17 38 38 H 1.09000 * 109.47823 * 59.99924 * 20 19 17 39 39 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 40 40 H 1.08999 * 109.47193 * 60.00023 * 21 20 19 41 41 H 1.09006 * 109.47158 * 300.00197 * 22 21 20 42 42 H 1.08999 * 109.46949 * 60.00017 * 22 21 20 43 43 H 0.97004 * 120.00059 * 359.97438 * 23 22 21 44 44 H 0.97000 * 120.00507 * 0.02562 * 25 24 23 45 45 H 0.97008 * 119.99872 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2672 -10.9224 -2.2324 21 6 -0.5067 -11.5125 -3.6236 22 6 -1.2030 -12.8683 -3.4896 23 7 -1.4318 -13.4335 -4.8216 24 6 -2.0365 -14.6311 -4.9506 25 7 -2.2464 -15.1514 -6.1761 26 8 -2.3917 -15.2425 -3.9615 27 6 1.4365 -4.7345 0.2253 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5471 0.1902 31 1 4.1533 -6.7247 0.4045 32 1 2.1300 -7.9004 1.0433 33 1 0.5456 -7.0924 0.9734 34 1 1.5547 -7.3009 -1.6561 35 1 -0.1994 -8.8900 -2.9444 36 1 1.3848 -9.6986 -2.8749 37 1 0.3624 -11.5991 -1.6546 38 1 -1.2222 -10.7913 -1.7236 39 1 -1.1360 -10.8360 -4.2018 40 1 0.4485 -11.6438 -4.1319 41 1 -0.5733 -13.5446 -2.9114 42 1 -2.1582 -12.7374 -2.9811 43 1 -1.1487 -12.9456 -5.6107 44 1 -1.9620 -14.6641 -6.9651 45 1 -2.6813 -16.0135 -6.2690 46 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321794234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:29 Heat of formation + Delta-G solvation = -93.005968 kcal Electronic energy + Delta-G solvation = -26438.500109 eV Core-core repulsion = 22328.013333 eV Total energy + Delta-G solvation = -4110.486775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18235 -39.82143 -39.05496 -36.92216 -36.37282 -34.54493 -34.26397 -33.53476 -32.36926 -31.01207 -29.55890 -29.03190 -26.18572 -25.27755 -24.10617 -21.83271 -21.73573 -21.44170 -20.84141 -20.28044 -18.61603 -17.96945 -17.66343 -17.22782 -16.66828 -16.51314 -15.82397 -15.73315 -15.23722 -15.17199 -14.92740 -14.59201 -14.51203 -14.43252 -13.87808 -13.68282 -13.58289 -13.27396 -12.77340 -12.69020 -12.43228 -12.22839 -12.03716 -11.83450 -11.68270 -11.52187 -11.41333 -10.98537 -10.97886 -10.85427 -10.73233 -10.69596 -10.49079 -10.13558 -9.88972 -9.44326 -9.41864 -9.00372 -8.92680 -8.27899 -7.36828 -6.52519 -4.12116 1.86670 2.22918 2.49261 2.65714 2.83309 3.06643 3.08932 3.14404 3.35991 3.89585 4.05900 4.37552 4.45543 4.56960 4.63048 4.89327 4.92690 4.98583 5.03435 5.14532 5.24771 5.34000 5.39815 5.46104 5.51500 5.59231 5.71094 5.81064 5.89356 5.90698 6.01439 6.04187 6.06233 6.21491 6.27456 6.46650 6.47976 6.51805 6.77846 6.96135 7.14968 7.23513 7.31999 7.52676 7.55000 7.67850 7.91641 8.22166 8.24514 8.92960 9.61263 10.65249 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.001458 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.516126 B =19199.894621 C =19952.552927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.196 4.196 14 C -0.073 4.073 15 C 0.167 3.833 16 N -0.722 5.722 17 C 0.509 3.491 18 O -0.546 6.546 19 C -0.140 4.140 20 C -0.101 4.101 21 C -0.131 4.131 22 C 0.135 3.865 23 N -0.746 5.746 24 C 0.703 3.297 25 N -0.869 5.869 26 O -0.594 6.594 27 C -0.171 4.171 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.396 0.604 45 H 0.414 0.586 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -20.875 -13.080 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.074 4.074 15 C 0.044 3.956 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.424 6.424 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.169 4.169 22 C 0.011 3.989 23 N -0.402 5.402 24 C 0.401 3.599 25 N -0.438 5.438 26 O -0.472 6.472 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.230 0.770 44 H 0.224 0.776 45 H 0.246 0.754 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.954 -21.475 -11.400 24.332 hybrid contribution 0.832 1.382 -1.239 2.034 sum 1.786 -20.093 -12.640 23.805 Atomic orbital electron populations 1.70048 1.05976 1.27678 1.45788 1.25302 0.95851 0.98870 0.96437 0.85640 0.79127 0.80302 0.78320 1.19078 1.20114 1.20075 1.21375 0.91825 0.80735 1.53024 0.88974 1.83980 1.34322 1.11429 1.78270 1.19327 0.90264 0.88067 0.92683 1.21251 0.93842 0.99127 1.10281 1.20746 0.98576 0.92259 0.97844 1.20476 0.93340 0.97107 1.10579 1.19281 0.93499 0.92879 1.01731 1.20145 1.00049 0.91364 0.84019 1.46180 1.60856 1.20514 1.09790 1.20695 0.77245 0.80925 0.91633 1.90705 1.51015 1.60406 1.40260 1.21662 1.03039 0.98302 0.95002 1.21218 1.02045 0.94952 0.95725 1.21820 1.01010 0.95555 0.98527 1.21265 1.00912 0.93945 0.82777 1.45136 1.64745 1.20409 1.09921 1.16002 0.78627 0.81366 0.83937 1.43006 1.68047 1.26089 1.06616 1.90993 1.57432 1.61812 1.36973 1.20082 0.99424 0.89837 1.09794 0.91982 0.85453 0.87283 0.87524 0.91004 0.90898 0.76237 0.88722 0.88875 0.90723 0.90629 0.91051 0.91138 0.91323 0.91275 0.76993 0.77600 0.75373 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.63 9.49 30.89 0.29 -10.34 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 9 O -0.18 -4.86 9.76 0.05 0.00 -4.86 16 10 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 11 C -0.23 -4.61 9.17 -39.39 -0.36 -4.97 16 12 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 13 C -0.20 -3.10 9.70 -39.54 -0.38 -3.48 16 14 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.17 2.37 5.80 -5.19 -0.03 2.34 16 16 N -0.72 -8.69 5.55 -61.47 -0.34 -9.04 16 17 C 0.51 6.15 7.83 -10.98 -0.09 6.06 16 18 O -0.55 -8.75 15.98 5.56 0.09 -8.66 16 19 C -0.14 -1.06 5.70 -27.89 -0.16 -1.22 16 20 C -0.10 -0.77 4.50 -26.73 -0.12 -0.89 16 21 C -0.13 -0.68 5.33 -26.73 -0.14 -0.82 16 22 C 0.14 0.97 5.67 -4.04 -0.02 0.94 16 23 N -0.75 -4.52 5.56 -65.22 -0.36 -4.89 16 24 C 0.70 6.09 8.84 -86.92 -0.77 5.32 16 25 N -0.87 -3.62 8.88 27.63 0.25 -3.38 16 26 O -0.59 -8.27 17.18 5.29 0.09 -8.18 16 27 C -0.17 -3.39 9.65 -39.40 -0.38 -3.77 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.40 4.19 8.46 -40.82 -0.35 3.84 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.40 1.12 8.49 -40.82 -0.35 0.78 16 44 H 0.40 0.34 8.84 -40.82 -0.36 -0.02 16 45 H 0.41 1.46 8.93 -40.82 -0.36 1.09 16 46 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -36.17 395.82 -8.65 -44.82 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.61 Total: 7.29 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.46 Total: -10.11 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.30 Total: -41.16 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.18 Total: -21.70 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.17 -8.65 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321794234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.186 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds