Wall clock time and date at job start Tue Mar 31 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47125 * 179.97438 * 21 20 19 23 23 N 1.46498 * 109.47037 * 180.02562 * 22 21 20 24 24 C 1.34777 * 119.99835 * 180.02562 * 23 22 21 25 25 N 1.34776 * 119.99612 * 180.02562 * 24 23 22 26 26 O 1.21586 * 119.99913 * 359.97438 * 24 23 22 27 27 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 31 31 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 32 32 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 33 33 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 34 34 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 35 35 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 36 36 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 37 37 H 1.09001 * 109.47096 * 299.99644 * 20 19 17 38 38 H 1.09000 * 109.47823 * 59.99924 * 20 19 17 39 39 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 40 40 H 1.08999 * 109.47193 * 60.00023 * 21 20 19 41 41 H 1.09006 * 109.47158 * 300.00197 * 22 21 20 42 42 H 1.08999 * 109.46949 * 60.00017 * 22 21 20 43 43 H 0.97004 * 120.00059 * 359.97438 * 23 22 21 44 44 H 0.97000 * 120.00507 * 0.02562 * 25 24 23 45 45 H 0.97008 * 119.99872 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2672 -10.9224 -2.2324 21 6 -0.5067 -11.5125 -3.6236 22 6 -1.2030 -12.8683 -3.4896 23 7 -1.4318 -13.4335 -4.8216 24 6 -2.0365 -14.6311 -4.9506 25 7 -2.2464 -15.1514 -6.1761 26 8 -2.3917 -15.2425 -3.9615 27 6 1.4365 -4.7345 0.2253 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5471 0.1902 31 1 4.1533 -6.7247 0.4045 32 1 2.1300 -7.9004 1.0433 33 1 0.5456 -7.0924 0.9734 34 1 1.5547 -7.3009 -1.6561 35 1 -0.1994 -8.8900 -2.9444 36 1 1.3848 -9.6986 -2.8749 37 1 0.3624 -11.5991 -1.6546 38 1 -1.2222 -10.7913 -1.7236 39 1 -1.1360 -10.8360 -4.2018 40 1 0.4485 -11.6438 -4.1319 41 1 -0.5733 -13.5446 -2.9114 42 1 -2.1582 -12.7374 -2.9811 43 1 -1.1487 -12.9456 -5.6107 44 1 -1.9620 -14.6641 -6.9651 45 1 -2.6813 -16.0135 -6.2690 46 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321794234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:29 Heat of formation + Delta-G solvation = -122.511344 kcal Electronic energy + Delta-G solvation = -26439.779558 eV Core-core repulsion = 22328.013333 eV Total energy + Delta-G solvation = -4111.766225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05427 -40.81722 -40.49190 -38.48769 -37.04417 -35.73290 -34.96121 -34.28533 -34.09963 -32.30400 -30.85171 -30.04687 -27.60955 -26.89860 -24.92500 -23.26250 -22.51957 -22.31804 -22.04499 -21.20356 -19.60725 -19.16905 -18.88530 -18.22765 -17.74426 -17.16908 -16.94643 -16.75484 -16.57165 -16.26283 -16.07462 -15.73869 -15.53947 -15.50628 -15.23831 -15.03572 -14.71150 -14.36820 -14.11480 -13.93476 -13.62814 -13.31287 -13.28052 -13.03462 -12.69746 -12.54189 -12.42463 -12.35142 -12.27267 -12.08456 -12.06126 -11.52751 -11.50952 -11.21516 -10.94814 -10.80327 -10.74238 -10.07963 -9.95993 -9.74652 -9.03291 -8.47070 -6.15632 0.39271 0.70608 1.36345 1.43994 1.54273 1.71194 1.96804 2.16948 2.17405 2.35165 2.86753 3.16028 3.41000 3.66910 3.79755 3.83464 3.92370 4.05566 4.09749 4.30679 4.35885 4.39595 4.44270 4.53348 4.55451 4.69739 4.73616 4.80563 4.88237 4.90534 5.02059 5.06332 5.12264 5.25905 5.34786 5.38638 5.46410 5.52751 5.62699 5.70861 5.72120 5.91938 6.01814 6.04708 6.16847 6.60960 6.97969 7.13121 7.30051 7.66519 7.78097 8.76168 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.001458 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.516126 B =19199.894621 C =19952.552927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.058 4.058 15 C 0.172 3.828 16 N -0.717 5.717 17 C 0.505 3.495 18 O -0.590 6.590 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.114 4.114 22 C 0.135 3.865 23 N -0.731 5.731 24 C 0.694 3.306 25 N -0.848 5.848 26 O -0.654 6.654 27 C -0.182 4.182 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.414 0.586 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.416 0.584 44 H 0.415 0.585 45 H 0.419 0.581 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -22.059 -15.081 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.059 4.059 15 C 0.049 3.951 16 N -0.369 5.369 17 C 0.294 3.706 18 O -0.471 6.471 19 C -0.170 4.170 20 C -0.139 4.139 21 C -0.152 4.152 22 C 0.010 3.990 23 N -0.388 5.388 24 C 0.391 3.609 25 N -0.417 5.417 26 O -0.537 6.537 27 C -0.202 4.202 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.250 0.750 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.253 0.747 44 H 0.246 0.754 45 H 0.252 0.748 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.061 -22.679 -13.495 26.701 hybrid contribution -0.015 1.379 -0.608 1.507 sum 4.046 -21.301 -14.103 25.865 Atomic orbital electron populations 1.70194 1.08054 1.28692 1.48941 1.26572 0.96806 1.02729 0.95898 0.84535 0.78366 0.74912 0.78455 1.17257 1.19386 1.19637 1.21863 0.92550 0.81328 1.53066 0.87882 1.83946 1.36013 1.12608 1.81452 1.19859 0.91660 0.87811 0.94451 1.21377 0.92977 1.00445 1.10572 1.21163 1.00437 0.91115 0.95971 1.20990 0.93017 0.98261 1.06445 1.19465 0.93999 0.92582 0.99855 1.19989 0.99382 0.90312 0.85442 1.46096 1.60884 1.20675 1.09210 1.21522 0.75897 0.80276 0.92951 1.90696 1.52698 1.61514 1.42198 1.21705 1.05020 0.97929 0.92297 1.21173 1.00676 0.95104 0.96947 1.21678 1.02196 0.94108 0.97172 1.21176 0.99796 0.94921 0.83088 1.44935 1.63885 1.19711 1.10311 1.16318 0.78558 0.81733 0.84274 1.42799 1.66864 1.26146 1.05906 1.90952 1.59943 1.63509 1.39258 1.20209 0.99360 0.90185 1.10413 0.91907 0.86196 0.83329 0.83412 0.89826 0.92360 0.74985 0.86591 0.85713 0.92217 0.92840 0.89323 0.88819 0.93025 0.93387 0.74736 0.75354 0.74828 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.67 21.61 0.30 -55.30 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 3 Si 1.02 41.70 29.55 68.60 2.03 43.73 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.41 -23.26 9.49 67.92 0.64 -22.62 16 8 H 0.10 5.29 5.21 -2.91 -0.02 5.28 16 9 O -0.23 -13.63 9.76 -22.74 -0.22 -13.85 16 10 C 0.11 5.30 6.65 22.58 0.15 5.45 16 11 C -0.23 -9.42 9.17 22.39 0.21 -9.22 16 12 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 13 C -0.17 -4.59 9.70 22.30 0.22 -4.37 16 14 C -0.06 -1.79 5.25 -19.88 -0.10 -1.90 16 15 C 0.17 4.56 5.80 85.63 0.50 5.06 16 16 N -0.72 -15.52 5.55 -466.79 -2.59 -18.11 16 17 C 0.50 11.25 7.83 87.66 0.69 11.93 16 18 O -0.59 -18.61 15.98 -3.03 -0.05 -18.66 16 19 C -0.13 -1.57 5.70 29.85 0.17 -1.40 16 20 C -0.10 -1.39 4.50 30.59 0.14 -1.25 16 21 C -0.11 -0.87 5.33 30.60 0.16 -0.71 16 22 C 0.14 1.85 5.67 86.38 0.49 2.34 16 23 N -0.73 -7.73 5.56 -478.53 -2.66 -10.39 16 24 C 0.69 11.54 8.84 179.05 1.58 13.12 16 25 N -0.85 -5.69 8.88 -184.75 -1.64 -7.33 16 26 O -0.65 -18.73 17.18 -3.99 -0.07 -18.80 16 27 C -0.18 -7.28 9.65 22.39 0.22 -7.07 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 33 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.41 7.30 8.46 -92.71 -0.78 6.52 16 35 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 1.00 8.10 -2.39 -0.02 0.99 16 38 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 41 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.42 1.12 8.49 -92.71 -0.79 0.33 16 44 H 0.42 -0.36 8.84 -92.71 -0.82 -1.18 16 45 H 0.42 2.41 8.93 -92.70 -0.83 1.58 16 46 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -86.85 395.82 -1.33 -88.18 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -2.16 Total: 23.80 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.74 Total: -13.27 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -6.60 Total: -91.13 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.34 Total: -51.30 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -86.85 -1.33 -88.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321794234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.329 kcal (2) G-P(sol) polarization free energy of solvation -86.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds