Wall clock time and date at job start Tue Mar 31 2020 18:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99782 * 2 1 4 4 H 1.48494 * 109.47004 * 239.99872 * 3 2 1 5 5 H 1.48497 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46885 * 119.99657 * 3 2 1 7 7 C 1.38808 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00148 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00402 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47207 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46877 * 65.00446 * 11 10 9 13 13 N 1.46502 * 109.47262 * 304.99951 * 11 10 9 14 14 C 1.34771 * 120.00230 * 154.99797 * 13 11 10 15 15 O 1.21287 * 119.99435 * 0.02562 * 14 13 11 16 16 C 1.50693 * 120.00299 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47435 * 180.02562 * 16 14 13 18 18 N 1.46493 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 16 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 C 1.53003 * 109.47002 * 185.00159 * 11 10 9 27 27 C 1.52997 * 117.49838 * 248.74889 * 26 11 10 28 28 C 1.53004 * 117.49900 * 180.08633 * 26 11 10 29 29 H 0.97000 * 120.00543 * 0.02562 * 1 2 3 30 30 H 0.97010 * 119.99800 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47028 * 60.00430 * 10 9 7 32 32 H 1.08995 * 109.47288 * 300.00508 * 10 9 7 33 33 H 0.97006 * 119.99440 * 335.00420 * 13 11 10 34 34 H 1.08997 * 109.47542 * 59.99831 * 16 14 13 35 35 H 1.09001 * 109.46974 * 300.00200 * 16 14 13 36 36 H 1.08997 * 109.47315 * 59.99176 * 17 16 14 37 37 H 1.09001 * 109.46782 * 299.99802 * 17 16 14 38 38 H 0.96998 * 120.00266 * 359.97438 * 18 17 16 39 39 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 40 40 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 41 41 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 42 42 H 1.09006 * 115.54855 * 34.41818 * 26 11 10 43 43 H 1.09001 * 117.49902 * 359.97438 * 27 26 11 44 44 H 1.09002 * 117.50114 * 145.02505 * 27 26 11 45 45 H 1.08991 * 117.49598 * 214.97842 * 28 26 11 46 46 H 1.08997 * 117.49466 * 0.02562 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4975 -4.8130 -0.9332 13 7 0.1449 -4.6769 1.1298 14 6 -1.0795 -5.2376 1.0786 15 8 -1.4203 -5.8609 0.0955 16 6 -2.0251 -5.0902 2.2426 17 6 -3.3356 -5.8154 1.9302 18 7 -4.2551 -5.6716 3.0616 19 6 -5.4796 -6.2323 3.0102 20 8 -5.8216 -6.8577 2.0239 21 6 -6.3999 -6.0888 4.1431 22 6 -7.6624 -6.6031 4.2214 23 6 -8.1756 -6.2243 5.4717 24 6 -7.2158 -5.5050 6.0942 25 8 -6.1475 -5.4254 5.2904 26 6 1.8249 -6.1412 0.1225 27 6 1.8341 -7.0685 -1.0944 28 6 1.0024 -7.4312 0.1386 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6855 -3.7149 0.8879 32 1 2.6842 -3.7140 -0.8921 33 1 0.4177 -4.1785 1.9161 34 1 -2.2267 -4.0331 2.4154 35 1 -1.5737 -5.5245 3.1347 36 1 -3.1337 -6.8725 1.7576 37 1 -3.7872 -5.3815 1.0381 38 1 -3.9826 -5.1728 3.8476 39 1 -8.1681 -7.1880 3.4673 40 1 -9.1534 -6.4635 5.8630 41 1 -7.2955 -5.0697 7.0793 42 1 2.7239 -6.1098 0.7382 43 1 1.2976 -6.7374 -1.9836 44 1 2.7389 -7.6476 -1.2791 45 1 1.3605 -8.2486 0.7644 46 1 -0.0807 -7.3384 0.0599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323110986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:37 Heat of formation + Delta-G solvation = -20.770142 kcal Electronic energy + Delta-G solvation = -27976.250300 eV Core-core repulsion = 23868.895905 eV Total energy + Delta-G solvation = -4107.354395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.00038 -40.04025 -39.46646 -37.31731 -35.38865 -35.02276 -33.43489 -33.40465 -31.65904 -31.00181 -29.85271 -28.00167 -24.94576 -23.96638 -22.73227 -22.14282 -22.03021 -21.51944 -20.82092 -20.34178 -19.99844 -18.81116 -17.39135 -16.92948 -16.71094 -16.60962 -16.08020 -15.86296 -15.63926 -15.06662 -14.96369 -14.43781 -14.34888 -14.10471 -13.58047 -13.34586 -13.30530 -13.18185 -13.13613 -12.98978 -12.84966 -12.18983 -11.94670 -11.70097 -11.62474 -11.15538 -11.04938 -10.93242 -10.82963 -10.57859 -10.41831 -10.24223 -10.13342 -9.96542 -9.72891 -9.55087 -9.41412 -8.99334 -8.95159 -8.65296 -7.00782 -5.82344 -3.12265 0.74970 2.01420 2.33292 2.83287 2.85731 2.94129 3.39867 3.44642 3.45647 3.47923 4.13837 4.33950 4.52125 4.54817 4.59039 4.74298 4.87104 4.98513 5.00415 5.17118 5.27406 5.28031 5.37653 5.41634 5.47516 5.52279 5.53571 5.76665 5.78483 5.84931 5.87094 5.89945 5.95815 6.07472 6.10221 6.20592 6.35837 6.46395 6.47035 6.51344 6.65222 6.91306 7.19049 7.63753 7.81477 7.83267 8.35500 8.48616 9.47394 10.02673 10.38231 11.39872 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.002492 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.505525 B =11231.170440 C =13617.579380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.705 5.705 14 C 0.522 3.478 15 O -0.543 6.543 16 C -0.156 4.156 17 C 0.135 3.865 18 N -0.719 5.719 19 C 0.602 3.398 20 O -0.516 6.516 21 C -0.077 4.077 22 C -0.121 4.121 23 C -0.226 4.226 24 C -0.007 4.007 25 O -0.164 6.164 26 C -0.163 4.163 27 C -0.171 4.171 28 C -0.185 4.185 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.405 0.595 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.211 0.789 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -14.509 13.415 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.106 0.894 13 N -0.355 5.355 14 C 0.308 3.692 15 O -0.422 6.422 16 C -0.197 4.197 17 C 0.012 3.988 18 N -0.370 5.370 19 C 0.388 3.612 20 O -0.393 6.393 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.245 4.245 24 C -0.077 4.077 25 O -0.059 6.059 26 C -0.182 4.182 27 C -0.209 4.209 28 C -0.222 4.222 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.240 0.760 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.761 -15.104 12.015 21.628 hybrid contribution 0.316 1.487 0.927 1.780 sum -9.445 -13.617 12.942 21.027 Atomic orbital electron populations 1.69648 1.05099 1.25855 1.57363 1.24746 0.95516 0.97710 1.02794 0.86261 0.78517 0.83478 0.77860 1.21236 1.21695 1.21270 1.19164 0.91012 0.84045 1.43220 0.91180 1.42336 1.05968 0.99710 1.89619 1.20918 0.93034 0.85088 0.98966 1.20808 0.90166 0.92724 0.89947 0.89376 1.45930 1.14438 1.54296 1.20799 1.20109 0.82222 0.78719 0.88137 1.90650 1.76098 1.41683 1.33764 1.21807 0.95179 1.03989 0.98695 1.21130 0.87441 1.01762 0.88456 1.45889 1.14774 1.55145 1.21204 1.16503 0.80741 0.79605 0.84391 1.90919 1.75808 1.41569 1.31019 1.22128 0.97901 1.04676 0.88242 1.22008 0.93317 1.00589 0.98284 1.21884 1.02038 1.04674 0.95909 1.24437 0.84997 1.01482 0.96757 1.84066 1.39075 1.58760 1.24017 1.22647 1.01445 0.91452 1.02693 1.22898 1.02021 1.03152 0.92820 1.23268 1.00705 0.97398 1.00850 0.93412 0.78024 0.95748 0.94715 0.76049 0.87622 0.88340 0.90136 0.89871 0.75966 0.82167 0.82559 0.77278 0.87950 0.88723 0.89250 0.89950 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.73 -17.58 5.43 -59.91 -0.33 -17.91 16 10 C 0.15 2.80 5.80 -4.04 -0.02 2.78 16 11 C 0.17 2.73 2.43 -67.93 -0.17 2.57 16 12 H 0.09 1.65 7.34 -51.93 -0.38 1.27 16 13 N -0.70 -10.36 4.50 -53.81 -0.24 -10.60 16 14 C 0.52 7.61 7.16 -10.99 -0.08 7.53 16 15 O -0.54 -9.56 13.01 5.55 0.07 -9.49 16 16 C -0.16 -1.67 5.81 -27.89 -0.16 -1.83 16 17 C 0.14 1.62 4.96 -4.05 -0.02 1.60 16 18 N -0.72 -7.58 5.55 -61.63 -0.34 -7.92 16 19 C 0.60 7.62 7.79 -12.86 -0.10 7.51 16 20 O -0.52 -8.31 16.86 5.19 0.09 -8.22 16 21 C -0.08 -0.83 7.13 -36.79 -0.26 -1.09 16 22 C -0.12 -1.16 10.62 -39.39 -0.42 -1.58 16 23 C -0.23 -1.58 10.87 -39.89 -0.43 -2.02 16 24 C -0.01 -0.04 12.08 29.63 0.36 0.31 16 25 O -0.16 -1.46 10.40 5.00 0.05 -1.41 16 26 C -0.16 -2.24 5.36 -90.62 -0.49 -2.73 16 27 C -0.17 -2.24 10.18 -26.69 -0.27 -2.51 16 28 C -0.19 -2.49 9.74 -26.69 -0.26 -2.75 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.39 9.87 7.33 -40.82 -0.30 9.57 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 5.55 8.60 -40.82 -0.35 5.20 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.41 3.25 8.23 -40.82 -0.34 2.91 16 39 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.16 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.21 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 43 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.09 393.16 -8.30 -42.39 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -6.66 Total: 16.39 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.57 Total: 0.67 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.19 Total: -63.12 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.21 Total: -19.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.09 -8.30 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323110986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.617 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds