Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47266 * 89.99804 * 3 2 1 5 5 H 1.48499 * 109.46684 * 209.99935 * 3 2 1 6 6 H 1.48499 * 109.47124 * 329.99646 * 3 2 1 7 7 C 1.38804 * 119.99842 * 180.27149 * 2 1 3 8 8 H 1.08006 * 120.00345 * 15.04683 * 7 2 1 9 9 N 1.36936 * 120.00237 * 195.05312 * 7 2 1 10 10 C 1.47077 * 136.05462 * 7.44964 * 9 7 2 11 11 C 1.53762 * 87.88391 * 152.97216 * 10 9 7 12 12 O 1.42901 * 114.57438 * 272.66355 * 11 10 9 13 13 C 1.53000 * 114.08340 * 139.78330 * 11 10 9 14 14 N 1.46498 * 109.47266 * 86.55883 * 13 11 10 15 15 C 1.34777 * 120.00059 * 179.97438 * 14 13 11 16 16 O 1.21495 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.48326 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31343 * 127.13222 * 359.69131 * 17 15 14 19 19 O 1.21249 * 111.49052 * 179.83014 * 18 17 15 20 20 C 1.33627 * 111.64140 * 0.08738 * 19 18 17 21 21 C 1.35011 * 106.59731 * 0.30999 * 20 19 18 22 22 C 1.50073 * 126.58829 * 178.62851 * 21 20 19 23 23 C 1.53335 * 108.97650 * 27.96760 * 22 21 20 24 24 C 1.52658 * 109.49422 * 271.44912 * 23 22 21 25 25 C 1.52623 * 110.92155 * 61.41923 * 24 23 22 26 26 C 1.50610 * 128.03700 * 180.54354 * 20 19 18 27 27 C 1.47069 * 136.06301 * 187.83484 * 9 7 2 28 28 H 0.96999 * 120.00088 * 174.91478 * 1 2 3 29 29 H 1.08999 * 113.46528 * 267.70391 * 10 9 7 30 30 H 1.08996 * 113.46472 * 38.14679 * 10 9 7 31 31 H 0.96697 * 114.00305 * 273.67715 * 12 11 10 32 32 H 1.08998 * 109.46826 * 206.55980 * 13 11 10 33 33 H 1.08998 * 109.47192 * 326.55918 * 13 11 10 34 34 H 0.96998 * 119.99730 * 0.02562 * 14 13 11 35 35 H 1.09007 * 109.55151 * 147.81397 * 22 21 20 36 36 H 1.09002 * 109.55760 * 268.01921 * 22 21 20 37 37 H 1.08996 * 109.46571 * 31.45777 * 23 22 21 38 38 H 1.09000 * 109.46647 * 151.44915 * 23 22 21 39 39 H 1.08993 * 109.18684 * 181.78622 * 24 23 22 40 40 H 1.08995 * 109.18791 * 301.04643 * 24 23 22 41 41 H 1.08998 * 109.40334 * 153.77414 * 25 24 23 42 42 H 1.09004 * 109.40044 * 273.61509 * 25 24 23 43 43 H 1.08997 * 109.53518 * 106.80918 * 26 20 19 44 44 H 1.09012 * 109.59368 * 346.61839 * 26 20 19 45 45 H 1.08997 * 113.46122 * 321.86021 * 27 9 7 46 46 H 1.09004 * 113.46712 * 92.23779 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4980 -2.1203 -0.2529 9 7 3.3443 -1.2240 0.3022 10 6 4.3313 -0.2560 0.8042 11 6 5.1075 -1.4423 1.3996 12 8 4.6926 -1.8251 2.7123 13 6 6.6264 -1.3309 1.2538 14 7 7.1707 -0.5695 2.3807 15 6 8.4968 -0.3440 2.4640 16 8 9.2409 -0.7719 1.6041 17 6 9.0480 0.4264 3.6053 18 7 8.3768 0.9549 4.6030 19 8 9.1125 1.5221 5.3822 20 6 10.3901 1.4461 4.9982 21 6 10.4044 0.7496 3.8417 22 6 11.6089 0.4263 3.0069 23 6 12.8421 0.3596 3.9158 24 6 13.4620 1.7495 4.0361 25 6 12.4783 2.7324 4.6651 26 6 11.6029 2.0075 5.6927 27 6 4.4224 -2.2239 0.2700 28 1 -0.4850 -0.8367 -0.0745 29 1 4.8718 0.2629 0.0125 30 1 3.9296 0.4231 1.5562 31 1 5.1259 -1.3310 3.4216 32 1 7.0646 -2.3289 1.2441 33 1 6.8654 -0.8202 0.3210 34 1 6.5766 -0.2282 3.0674 35 1 11.4649 -0.5363 2.5162 36 1 11.7501 1.2020 2.2543 37 1 12.5464 0.0069 4.9038 38 1 13.5719 -0.3277 3.4880 39 1 14.3558 1.6905 4.6570 40 1 13.7389 2.1054 3.0438 41 1 13.0309 3.5313 5.1595 42 1 11.8443 3.1580 3.8872 43 1 12.1708 1.1959 6.1474 44 1 11.2894 2.7103 6.4648 45 1 4.0982 -3.2212 0.5669 46 1 4.9863 -2.2243 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325281633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = 38.378864 kcal Electronic energy + Delta-G solvation = -29154.625410 eV Core-core repulsion = 25049.835909 eV Total energy + Delta-G solvation = -4104.789502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.41714 -40.16083 -39.04717 -38.56237 -35.36026 -34.45674 -34.23894 -32.34868 -32.28708 -31.65120 -29.12049 -26.84836 -26.32096 -25.47961 -25.29858 -24.12341 -21.64615 -21.40064 -20.45033 -20.20409 -19.64261 -18.40279 -18.12041 -17.53045 -17.05451 -16.48676 -15.98991 -15.86178 -15.43406 -15.28390 -15.00489 -14.51046 -14.16211 -13.92146 -13.86091 -13.79133 -13.65503 -13.28828 -13.20935 -12.88238 -12.72943 -12.43833 -12.25710 -12.11979 -11.67972 -11.62930 -11.39432 -11.09854 -10.99862 -10.90703 -10.59647 -10.55429 -10.45241 -10.20083 -10.10032 -9.45812 -9.42948 -9.26716 -9.07424 -8.70915 -7.20401 -6.30940 -3.22103 0.81132 1.33859 2.52542 2.71598 2.92314 3.39249 3.45544 3.60389 3.64398 4.08051 4.22735 4.24639 4.31308 4.43122 4.49687 4.54542 4.58802 4.62166 4.76342 4.81598 4.86346 4.99634 5.04266 5.19533 5.25167 5.30616 5.39339 5.42932 5.46747 5.47199 5.57796 5.70280 5.72173 5.73303 5.81703 5.95557 6.00453 6.09038 6.14806 6.25357 6.33131 6.52538 7.07415 7.09255 7.65746 7.80912 7.89504 8.23961 8.97220 9.49858 10.33986 11.19556 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002530 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.471410 B =11065.942841 C =11525.321453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.024 4.024 3 Si 1.062 2.938 4 H -0.294 1.294 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.301 4.301 8 H 0.083 0.917 9 N -0.613 5.613 10 C 0.079 3.921 11 C 0.071 3.929 12 O -0.517 6.517 13 C 0.105 3.895 14 N -0.711 5.711 15 C 0.602 3.398 16 O -0.518 6.518 17 C -0.021 4.021 18 N -0.332 5.332 19 O 0.127 5.873 20 C -0.036 4.036 21 C -0.146 4.146 22 C -0.048 4.048 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.038 4.038 27 C 0.136 3.864 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.363 0.637 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.404 0.596 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.038 4.163 12.192 33.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.223 4.223 3 Si 0.894 3.106 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.427 4.427 8 H 0.101 0.899 9 N -0.340 5.340 10 C -0.047 4.047 11 C 0.028 3.972 12 O -0.321 6.321 13 C -0.019 4.019 14 N -0.364 5.364 15 C 0.385 3.615 16 O -0.392 6.392 17 C -0.180 4.180 18 N -0.033 5.033 19 O 0.052 5.948 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.076 4.076 27 C 0.009 3.991 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.210 0.790 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 29.345 5.046 11.445 31.899 hybrid contribution 0.695 -1.166 0.156 1.366 sum 30.039 3.879 11.601 32.434 Atomic orbital electron populations 1.70892 1.05350 1.29593 1.51464 1.25754 0.96513 1.00827 0.99193 0.83774 0.74518 0.75946 0.76372 1.22195 1.20942 1.22128 1.20097 0.80144 0.96092 1.46379 0.89907 1.45892 1.03532 1.07669 1.76904 1.23430 0.90903 0.93821 0.96547 1.23287 0.88640 0.99675 0.85597 1.86682 1.68329 1.63503 1.13583 1.22079 0.93720 0.96798 0.89309 1.45823 1.07077 1.55883 1.27660 1.16789 0.82275 0.79089 0.83332 1.90787 1.58331 1.50792 1.39307 1.23156 0.92557 1.04535 0.97718 1.74441 1.17692 1.09243 1.01948 1.84767 1.14837 1.54803 1.40362 1.24133 0.86910 1.02058 0.96814 1.20668 0.94915 1.02054 0.97422 1.20024 0.88712 1.03736 0.96062 1.21752 0.96857 0.97287 1.00369 1.21562 0.98192 0.94842 1.01496 1.21599 0.97562 0.98171 0.98212 1.20285 0.88679 1.00845 0.97817 1.22359 0.88834 0.95321 0.92570 0.92792 0.92813 0.92543 0.79046 0.89996 0.89494 0.76041 0.88967 0.89896 0.91219 0.90934 0.91596 0.91378 0.90310 0.91214 0.88094 0.89142 0.92370 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.96 13.70 55.49 0.76 -29.20 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 3 Si 1.06 27.16 25.51 -169.99 -4.34 22.83 16 4 H -0.29 -7.25 6.97 56.52 0.39 -6.85 16 5 H -0.28 -6.67 5.65 56.52 0.32 -6.35 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.30 -8.91 11.03 -15.06 -0.17 -9.08 16 8 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 9 N -0.61 -15.47 3.62 -184.56 -0.67 -16.14 16 10 C 0.08 1.68 5.05 -8.36 -0.04 1.64 16 11 C 0.07 1.24 1.74 -89.97 -0.16 1.09 16 12 O -0.52 -9.19 13.56 -35.23 -0.48 -9.67 16 13 C 0.11 1.49 5.42 -4.04 -0.02 1.46 16 14 N -0.71 -9.33 5.34 -61.10 -0.33 -9.66 16 15 C 0.60 8.32 7.85 -12.11 -0.10 8.22 16 16 O -0.52 -8.11 15.51 5.37 0.08 -8.03 16 17 C -0.02 -0.26 7.19 -82.71 -0.60 -0.86 16 18 N -0.33 -4.03 11.88 33.31 0.40 -3.63 16 19 O 0.13 1.31 11.18 18.16 0.20 1.51 16 20 C -0.04 -0.30 6.64 -35.50 -0.24 -0.53 16 21 C -0.15 -1.46 5.72 -104.86 -0.60 -2.06 16 22 C -0.05 -0.40 5.36 -28.01 -0.15 -0.55 16 23 C -0.13 -0.69 5.55 -26.73 -0.15 -0.84 16 24 C -0.12 -0.50 5.64 -27.10 -0.15 -0.65 16 25 C -0.12 -0.48 5.63 -26.81 -0.15 -0.63 16 26 C -0.04 -0.17 5.55 -27.81 -0.15 -0.33 16 27 C 0.14 2.73 8.10 -8.50 -0.07 2.66 16 28 H 0.26 8.32 8.73 -40.82 -0.36 7.97 16 29 H 0.05 1.10 6.80 -51.93 -0.35 0.75 16 30 H 0.06 1.25 6.24 -51.93 -0.32 0.93 16 31 H 0.36 4.87 7.20 45.56 0.33 5.20 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 34 H 0.40 4.87 6.72 -40.82 -0.27 4.60 16 35 H 0.09 0.93 7.09 -51.93 -0.37 0.56 16 36 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.07 0.37 5.68 -51.93 -0.30 0.08 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.38 7.78 -51.93 -0.40 -0.02 16 43 H 0.10 0.33 6.37 -51.93 -0.33 0.00 16 44 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -36.07 363.45 -7.60 -43.67 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.88 Total: 4.12 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.83 Total: -1.27 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.16 Total: -58.64 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.19 Total: -16.19 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -4.34 Total: 22.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.07 -7.60 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325281633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.053 kcal (2) G-P(sol) polarization free energy of solvation -36.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds