Wall clock time and date at job start Tue Mar 31 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47266 * 89.99804 * 3 2 1 5 5 H 1.48499 * 109.46684 * 209.99935 * 3 2 1 6 6 H 1.48499 * 109.47124 * 329.99646 * 3 2 1 7 7 C 1.38804 * 119.99842 * 180.27149 * 2 1 3 8 8 H 1.08006 * 120.00345 * 15.04683 * 7 2 1 9 9 N 1.36936 * 120.00237 * 195.05312 * 7 2 1 10 10 C 1.47077 * 136.05462 * 7.44964 * 9 7 2 11 11 C 1.53762 * 87.88391 * 152.97216 * 10 9 7 12 12 O 1.42901 * 114.57438 * 272.66355 * 11 10 9 13 13 C 1.53000 * 114.08340 * 139.78330 * 11 10 9 14 14 N 1.46498 * 109.47266 * 86.55883 * 13 11 10 15 15 C 1.34777 * 120.00059 * 179.97438 * 14 13 11 16 16 O 1.21495 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.48326 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31343 * 127.13222 * 359.69131 * 17 15 14 19 19 O 1.21249 * 111.49052 * 179.83014 * 18 17 15 20 20 C 1.33627 * 111.64140 * 0.08738 * 19 18 17 21 21 C 1.35011 * 106.59731 * 0.30999 * 20 19 18 22 22 C 1.50073 * 126.58829 * 178.62851 * 21 20 19 23 23 C 1.53335 * 108.97650 * 27.96760 * 22 21 20 24 24 C 1.52658 * 109.49422 * 271.44912 * 23 22 21 25 25 C 1.52623 * 110.92155 * 61.41923 * 24 23 22 26 26 C 1.50610 * 128.03700 * 180.54354 * 20 19 18 27 27 C 1.47069 * 136.06301 * 187.83484 * 9 7 2 28 28 H 0.96999 * 120.00088 * 174.91478 * 1 2 3 29 29 H 1.08999 * 113.46528 * 267.70391 * 10 9 7 30 30 H 1.08996 * 113.46472 * 38.14679 * 10 9 7 31 31 H 0.96697 * 114.00305 * 273.67715 * 12 11 10 32 32 H 1.08998 * 109.46826 * 206.55980 * 13 11 10 33 33 H 1.08998 * 109.47192 * 326.55918 * 13 11 10 34 34 H 0.96998 * 119.99730 * 0.02562 * 14 13 11 35 35 H 1.09007 * 109.55151 * 147.81397 * 22 21 20 36 36 H 1.09002 * 109.55760 * 268.01921 * 22 21 20 37 37 H 1.08996 * 109.46571 * 31.45777 * 23 22 21 38 38 H 1.09000 * 109.46647 * 151.44915 * 23 22 21 39 39 H 1.08993 * 109.18684 * 181.78622 * 24 23 22 40 40 H 1.08995 * 109.18791 * 301.04643 * 24 23 22 41 41 H 1.08998 * 109.40334 * 153.77414 * 25 24 23 42 42 H 1.09004 * 109.40044 * 273.61509 * 25 24 23 43 43 H 1.08997 * 109.53518 * 106.80918 * 26 20 19 44 44 H 1.09012 * 109.59368 * 346.61839 * 26 20 19 45 45 H 1.08997 * 113.46122 * 321.86021 * 27 9 7 46 46 H 1.09004 * 113.46712 * 92.23779 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4980 -2.1203 -0.2529 9 7 3.3443 -1.2240 0.3022 10 6 4.3313 -0.2560 0.8042 11 6 5.1075 -1.4423 1.3996 12 8 4.6926 -1.8251 2.7123 13 6 6.6264 -1.3309 1.2538 14 7 7.1707 -0.5695 2.3807 15 6 8.4968 -0.3440 2.4640 16 8 9.2409 -0.7719 1.6041 17 6 9.0480 0.4264 3.6053 18 7 8.3768 0.9549 4.6030 19 8 9.1125 1.5221 5.3822 20 6 10.3901 1.4461 4.9982 21 6 10.4044 0.7496 3.8417 22 6 11.6089 0.4263 3.0069 23 6 12.8421 0.3596 3.9158 24 6 13.4620 1.7495 4.0361 25 6 12.4783 2.7324 4.6651 26 6 11.6029 2.0075 5.6927 27 6 4.4224 -2.2239 0.2700 28 1 -0.4850 -0.8367 -0.0745 29 1 4.8718 0.2629 0.0125 30 1 3.9296 0.4231 1.5562 31 1 5.1259 -1.3310 3.4216 32 1 7.0646 -2.3289 1.2441 33 1 6.8654 -0.8202 0.3210 34 1 6.5766 -0.2282 3.0674 35 1 11.4649 -0.5363 2.5162 36 1 11.7501 1.2020 2.2543 37 1 12.5464 0.0069 4.9038 38 1 13.5719 -0.3277 3.4880 39 1 14.3558 1.6905 4.6570 40 1 13.7389 2.1054 3.0438 41 1 13.0309 3.5313 5.1595 42 1 11.8443 3.1580 3.8872 43 1 12.1708 1.1959 6.1474 44 1 11.2894 2.7103 6.4648 45 1 4.0982 -3.2212 0.5669 46 1 4.9863 -2.2243 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325281633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:45 Heat of formation + Delta-G solvation = 9.910641 kcal Electronic energy + Delta-G solvation = -29155.859885 eV Core-core repulsion = 25049.835909 eV Total energy + Delta-G solvation = -4106.023976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.22242 -41.46561 -40.37514 -39.06612 -36.88310 -35.54703 -35.13978 -34.46654 -32.91182 -32.26038 -30.71280 -28.15904 -27.17453 -27.14462 -25.79016 -25.22414 -23.20260 -22.38719 -21.47799 -21.16153 -20.60043 -19.77446 -19.15486 -18.92461 -18.02659 -17.72846 -17.29616 -16.71753 -16.52270 -16.29613 -16.00406 -15.72396 -15.63381 -15.27907 -15.13514 -14.77283 -14.58475 -14.36623 -14.27234 -14.17668 -13.65527 -13.42332 -13.30559 -12.97134 -12.86036 -12.83301 -12.40474 -12.14438 -11.97188 -11.91980 -11.78621 -11.64426 -11.46642 -11.40320 -11.38974 -11.18453 -10.99249 -10.72465 -10.38326 -10.10182 -9.31007 -8.67749 -5.50804 -0.04961 0.59951 1.33391 1.45186 1.60266 1.61888 1.92116 1.94922 2.49255 2.75233 2.81429 2.92018 3.10041 3.24101 3.45146 3.63367 3.64425 3.89840 3.95030 4.05801 4.14536 4.18218 4.28331 4.38908 4.44756 4.46962 4.50492 4.57782 4.63406 4.71838 4.74834 4.82324 4.89955 4.94834 4.95566 4.99504 5.08680 5.15386 5.19638 5.29731 5.35707 5.44210 5.54237 5.89900 6.04806 6.58810 6.64488 6.75670 6.95542 7.27728 8.20257 8.84347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002530 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.471410 B =11065.942841 C =11525.321453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.085 4.085 3 Si 1.102 2.898 4 H -0.281 1.281 5 H -0.251 1.251 6 H -0.300 1.300 7 C -0.290 4.290 8 H 0.048 0.952 9 N -0.649 5.649 10 C 0.071 3.929 11 C 0.101 3.899 12 O -0.536 6.536 13 C 0.119 3.881 14 N -0.707 5.707 15 C 0.603 3.397 16 O -0.540 6.540 17 C -0.043 4.043 18 N -0.350 5.350 19 O 0.129 5.871 20 C -0.018 4.018 21 C -0.162 4.162 22 C -0.045 4.045 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.039 4.039 27 C 0.130 3.870 28 H 0.246 0.754 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.383 0.617 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.409 0.591 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.051 0.949 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.124 5.493 13.705 38.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.277 4.277 3 Si 0.927 3.073 4 H -0.207 1.207 5 H -0.175 1.175 6 H -0.228 1.228 7 C -0.417 4.417 8 H 0.066 0.934 9 N -0.377 5.377 10 C -0.054 4.054 11 C 0.058 3.942 12 O -0.343 6.343 13 C -0.005 4.005 14 N -0.361 5.361 15 C 0.387 3.613 16 O -0.416 6.416 17 C -0.200 4.200 18 N -0.050 5.050 19 O 0.053 5.947 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.083 4.083 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.076 4.076 27 C 0.004 3.996 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.069 0.931 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 33.482 6.343 12.982 36.467 hybrid contribution -0.512 -1.692 -0.249 1.785 sum 32.970 4.651 12.732 35.648 Atomic orbital electron populations 1.71005 1.06696 1.28727 1.54815 1.27115 0.96540 1.04536 0.99528 0.83311 0.74677 0.71905 0.77383 1.20732 1.17523 1.22751 1.19934 0.82802 0.94718 1.44272 0.93384 1.45928 1.03312 1.10906 1.77578 1.23696 0.90307 0.94481 0.96918 1.22791 0.90249 0.96359 0.84792 1.86639 1.69266 1.64072 1.14302 1.21856 0.90828 0.97850 0.89961 1.45737 1.07121 1.55710 1.27488 1.16944 0.82084 0.78783 0.83451 1.90773 1.58808 1.51776 1.40244 1.23136 0.93754 1.05406 0.97743 1.74425 1.18430 1.09942 1.02253 1.84735 1.15735 1.54255 1.39942 1.24816 0.86934 1.00377 0.96044 1.20929 0.94497 1.02843 0.98456 1.20023 0.89569 1.02322 0.96386 1.21746 0.95606 0.98630 0.99824 1.21558 0.98717 0.93686 1.01876 1.21616 0.97335 0.98618 0.97782 1.20576 0.87077 1.01863 0.98116 1.22648 0.87727 0.94268 0.94970 0.94442 0.90941 0.93419 0.76787 0.88792 0.88741 0.75399 0.91155 0.90193 0.90774 0.90355 0.89719 0.91620 0.88099 0.92885 0.86204 0.87125 0.93108 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.46 13.70 21.65 0.30 -64.16 16 2 C -0.09 -5.28 5.50 84.86 0.47 -4.81 16 3 Si 1.10 54.58 25.51 68.60 1.75 56.33 16 4 H -0.28 -13.14 6.97 99.48 0.69 -12.45 16 5 H -0.25 -10.93 5.65 99.48 0.56 -10.36 16 6 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 7 C -0.29 -17.55 11.03 84.03 0.93 -16.62 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 9 N -0.65 -32.37 3.62 -738.30 -2.67 -35.04 16 10 C 0.07 2.86 5.05 83.27 0.42 3.28 16 11 C 0.10 3.31 1.74 -10.37 -0.02 3.29 16 12 O -0.54 -18.13 13.56 -148.98 -2.02 -20.15 16 13 C 0.12 3.05 5.42 86.38 0.47 3.52 16 14 N -0.71 -17.13 5.34 -465.52 -2.49 -19.61 16 15 C 0.60 15.90 7.85 86.93 0.68 16.58 16 16 O -0.54 -16.37 15.51 -3.70 -0.06 -16.42 16 17 C -0.04 -1.03 7.19 42.69 0.31 -0.72 16 18 N -0.35 -8.03 11.88 -49.01 -0.58 -8.62 16 19 O 0.13 2.43 11.18 75.05 0.84 3.27 16 20 C -0.02 -0.26 6.64 24.91 0.17 -0.09 16 21 C -0.16 -3.04 5.72 -20.02 -0.11 -3.15 16 22 C -0.05 -0.72 5.36 29.76 0.16 -0.56 16 23 C -0.12 -1.05 5.55 30.59 0.17 -0.88 16 24 C -0.12 -0.61 5.64 30.36 0.17 -0.44 16 25 C -0.12 -0.56 5.63 30.54 0.17 -0.39 16 26 C -0.04 -0.21 5.55 29.89 0.17 -0.04 16 27 C 0.13 4.99 8.10 83.18 0.67 5.66 16 28 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 29 H 0.07 2.69 6.80 -2.39 -0.02 2.67 16 30 H 0.05 2.01 6.24 -2.39 -0.01 1.99 16 31 H 0.38 9.49 7.20 -74.06 -0.53 8.96 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.36 7.89 -2.39 -0.02 2.34 16 34 H 0.41 9.08 6.72 -92.71 -0.62 8.45 16 35 H 0.07 1.41 7.09 -2.38 -0.02 1.39 16 36 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 37 H 0.07 0.58 5.68 -2.39 -0.01 0.57 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.07 0.39 8.09 -2.39 -0.02 0.37 16 41 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.05 0.46 7.78 -2.39 -0.02 0.44 16 43 H 0.12 0.29 6.37 -2.39 -0.02 0.28 16 44 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 Total: -1.00 -80.91 363.45 -0.43 -81.35 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.32 Total: 18.44 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.82 Total: 4.62 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.44 Total: -127.43 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.24 Total: -33.31 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.75 Total: 56.33 kcal Total: -80.91 -0.43 -81.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325281633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.256 kcal (2) G-P(sol) polarization free energy of solvation -80.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds