Wall clock time and date at job start Tue Mar 31 2020 18:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.46961 * 30.00125 * 3 2 1 6 6 H 1.48505 * 109.46943 * 149.99962 * 3 2 1 7 7 C 1.38818 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00412 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99684 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47204 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.55162 * 305.12542 * 11 10 9 13 13 C 1.53286 * 109.51289 * 184.99975 * 11 10 9 14 14 N 1.47156 * 108.38530 * 187.77537 * 13 11 10 15 15 C 1.34778 * 120.98091 * 230.55756 * 14 13 11 16 16 O 1.21284 * 120.00056 * 359.97329 * 15 14 13 17 17 C 1.50703 * 120.00060 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47279 * 179.97438 * 17 15 14 19 19 N 1.46493 * 109.46845 * 179.97438 * 18 17 15 20 20 C 1.35768 * 119.62717 * 269.72731 * 19 18 17 21 21 C 1.35348 * 120.70188 * 179.72379 * 20 19 18 22 22 C 1.40193 * 119.94974 * 0.52815 * 21 20 19 23 23 C 1.36407 * 119.26293 * 359.75238 * 22 21 20 24 24 C 1.34660 * 119.62555 * 90.00654 * 19 18 17 25 25 O 1.22057 * 119.98099 * 359.97438 * 24 19 18 26 26 C 1.47148 * 118.03649 * 50.53434 * 14 13 11 27 27 C 1.53300 * 108.41473 * 309.44697 * 26 14 13 28 28 O 1.42961 * 109.51360 * 65.25221 * 11 10 9 29 29 H 0.97007 * 119.99847 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00661 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47302 * 59.99540 * 10 9 7 32 32 H 1.08997 * 109.46857 * 299.99901 * 10 9 7 33 33 H 1.08998 * 109.68904 * 68.04960 * 13 11 10 34 34 H 1.09001 * 109.71424 * 307.51023 * 13 11 10 35 35 H 1.09004 * 109.46725 * 300.00147 * 17 15 14 36 36 H 1.08994 * 109.46869 * 59.99449 * 17 15 14 37 37 H 1.08998 * 109.47019 * 300.00318 * 18 17 15 38 38 H 1.08997 * 109.46736 * 59.99906 * 18 17 15 39 39 H 1.08005 * 119.64458 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.02034 * 180.27161 * 21 20 19 41 41 H 1.07997 * 120.36775 * 179.76954 * 22 21 20 42 42 H 1.08002 * 120.34371 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.68336 * 69.19042 * 26 14 13 44 44 H 1.08999 * 109.68144 * 189.70712 * 26 14 13 45 45 H 1.08998 * 109.51580 * 172.24632 * 27 26 14 46 46 H 1.08997 * 109.51046 * 292.39879 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 6 1.0636 -4.8198 -0.0035 12 1 0.3764 -4.7135 0.8359 13 6 1.8248 -6.1443 0.1224 14 7 0.8706 -7.2480 -0.0698 15 6 0.7990 -8.2647 0.8120 16 8 1.5280 -8.2793 1.7812 17 6 -0.1869 -9.3835 0.5938 18 6 -0.0638 -10.4006 1.7301 19 7 -1.0226 -11.4878 1.5182 20 6 -2.2703 -11.3945 2.0453 21 6 -3.1752 -12.3835 1.8583 22 6 -2.8235 -13.5241 1.1229 23 6 -1.5676 -13.6185 0.5989 24 6 -0.6546 -12.5708 0.8077 25 8 0.4723 -12.6422 0.3441 26 6 -0.0034 -7.2085 -1.2530 27 6 -0.6763 -5.8324 -1.3123 28 8 0.3260 -4.8153 -1.2281 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 -0.0023 31 1 2.6840 -3.7150 0.8888 32 1 2.6852 -3.7142 -0.8911 33 1 2.2749 -6.2165 1.1124 34 1 2.6029 -6.1951 -0.6392 35 1 -1.1986 -8.9779 0.5767 36 1 0.0242 -9.8735 -0.3565 37 1 0.9479 -10.8059 1.7468 38 1 -0.2747 -9.9107 2.6807 39 1 -2.5452 -10.5195 2.6157 40 1 -4.1661 -12.2959 2.2788 41 1 -3.5390 -14.3189 0.9727 42 1 -1.2782 -14.4892 0.0291 43 1 0.5903 -7.3660 -2.1534 44 1 -0.7635 -7.9857 -1.1739 45 1 -1.2193 -5.7328 -2.2521 46 1 -1.3698 -5.7300 -0.4777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326987703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:10 Heat of formation + Delta-G solvation = -55.636133 kcal Electronic energy + Delta-G solvation = -28436.288964 eV Core-core repulsion = 24327.422666 eV Total energy + Delta-G solvation = -4108.866298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78064 -40.45210 -38.48683 -37.26946 -35.50429 -35.14028 -34.44440 -32.42935 -31.54065 -30.28064 -30.10976 -28.21422 -26.37143 -24.95782 -24.07180 -23.56423 -22.80692 -22.11554 -20.90540 -19.31142 -18.28687 -17.73026 -17.30784 -17.02269 -16.69768 -16.57106 -16.20912 -16.01720 -15.64633 -15.15092 -14.95376 -14.65036 -14.56118 -14.40780 -14.08518 -13.80012 -13.22411 -13.13273 -13.08815 -12.79346 -12.68428 -12.48324 -12.41612 -12.27825 -12.04677 -11.71650 -11.60682 -11.06308 -10.90871 -10.80912 -10.63773 -10.51017 -10.31154 -10.13389 -9.96967 -9.94219 -9.69411 -8.87840 -8.63554 -8.41096 -6.90710 -5.74171 -3.02861 0.38980 1.45610 2.11468 2.33870 2.71567 3.24379 3.45504 3.50288 3.52035 3.87778 4.04970 4.19286 4.21341 4.33749 4.44361 4.56004 4.63199 4.67484 4.76452 4.79750 4.85266 4.93071 5.00533 5.07308 5.22702 5.26933 5.40056 5.40848 5.54123 5.58773 5.59988 5.63838 5.64839 5.83108 5.83914 5.91072 6.07487 6.20356 6.25255 6.53647 6.66301 6.67253 7.10522 7.40669 7.64928 7.71206 7.86557 8.43910 9.55699 10.12275 10.48138 11.48666 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.001939 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.354463 B =14440.580230 C =14665.732238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.611 5.611 15 C 0.523 3.477 16 O -0.538 6.538 17 C -0.154 4.154 18 C 0.106 3.894 19 N -0.496 5.496 20 C 0.135 3.865 21 C -0.235 4.235 22 C -0.016 4.016 23 C -0.245 4.245 24 C 0.510 3.490 25 O -0.549 6.549 26 C 0.070 3.930 27 C 0.046 3.954 28 O -0.357 6.357 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -27.862 1.848 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.082 0.918 13 C -0.038 4.038 14 N -0.345 5.345 15 C 0.311 3.689 16 O -0.416 6.416 17 C -0.195 4.195 18 C -0.016 4.016 19 N -0.207 5.207 20 C 0.007 3.993 21 C -0.258 4.258 22 C -0.038 4.038 23 C -0.267 4.267 24 C 0.312 3.688 25 O -0.431 6.431 26 C -0.053 4.053 27 C -0.032 4.032 28 O -0.275 6.275 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.552 -27.633 1.932 28.990 hybrid contribution -0.218 0.709 0.031 0.743 sum -8.770 -26.924 1.963 28.384 Atomic orbital electron populations 1.69673 1.05125 1.25575 1.57728 1.24748 0.95545 0.97705 1.03029 0.86166 0.78621 0.83745 0.77512 1.21717 1.21804 1.20745 1.19232 0.91048 0.84064 1.42688 0.91099 1.42226 1.05983 0.99501 1.89381 1.20625 0.92407 0.84612 0.98895 1.22804 0.94236 0.94223 0.87183 0.91828 1.22381 0.91738 0.85260 1.04411 1.48147 1.38829 1.22965 1.24577 1.20235 0.83965 0.82481 0.82264 1.90731 1.43903 1.77619 1.29318 1.21964 1.00336 0.95453 1.01730 1.21732 0.95063 0.86057 0.98757 1.45628 1.12324 1.18869 1.43843 1.22058 0.83499 0.99692 0.94017 1.20688 1.01108 0.95724 1.08278 1.21469 0.95589 0.96306 0.90452 1.22156 0.94762 1.01104 1.08678 1.17229 0.89214 0.82420 0.79923 1.90993 1.21144 1.79747 1.51215 1.22558 0.94461 0.99748 0.88529 1.22924 0.90898 0.86382 1.02992 1.88184 1.49660 1.51967 1.37710 0.93564 0.77942 0.94577 0.95219 0.87882 0.90283 0.88284 0.87878 0.87104 0.87976 0.81965 0.83679 0.84797 0.83491 0.90100 0.89235 0.87679 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.86 5.55 -59.90 -0.33 -19.19 16 10 C 0.16 3.32 5.93 -4.04 -0.02 3.30 16 11 C 0.07 1.24 2.81 -26.58 -0.07 1.17 16 12 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 13 C 0.08 1.19 5.93 -3.54 -0.02 1.17 16 14 N -0.61 -7.37 3.02 -172.28 -0.52 -7.89 16 15 C 0.52 6.28 7.71 -10.98 -0.08 6.20 16 16 O -0.54 -8.26 15.45 5.55 0.09 -8.17 16 17 C -0.15 -1.28 4.40 -27.88 -0.12 -1.40 16 18 C 0.11 0.90 4.62 -4.05 -0.02 0.88 16 19 N -0.50 -3.90 2.58 -119.78 -0.31 -4.21 16 20 C 0.13 0.64 10.28 -16.84 -0.17 0.46 16 21 C -0.23 -0.95 10.01 -39.88 -0.40 -1.35 16 22 C -0.02 -0.08 10.10 -39.51 -0.40 -0.48 16 23 C -0.25 -1.91 9.99 -39.38 -0.39 -2.31 16 24 C 0.51 5.39 7.41 -15.45 -0.11 5.28 16 25 O -0.55 -8.08 16.64 4.87 0.08 -8.00 16 26 C 0.07 0.66 6.54 -3.53 -0.02 0.64 16 27 C 0.05 0.53 6.99 37.31 0.26 0.80 16 28 O -0.36 -6.04 10.34 -35.23 -0.36 -6.41 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.64 7.67 -40.82 -0.31 10.32 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.57 7.66 -51.93 -0.40 0.17 16 36 H 0.10 0.89 8.01 -51.93 -0.42 0.47 16 37 H 0.11 1.24 7.35 -51.93 -0.38 0.86 16 38 H 0.10 0.72 7.96 -51.93 -0.41 0.31 16 39 H 0.16 0.29 8.03 -52.48 -0.42 -0.13 16 40 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 45 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -37.64 382.85 -8.52 -46.16 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.80 Total: 5.25 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.83 Total: 6.88 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.44 Total: -59.11 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.20 Total: -22.58 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.64 -8.52 -46.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326987703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.476 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds