Wall clock time and date at job start Tue Mar 31 2020 18:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.46961 * 30.00125 * 3 2 1 6 6 H 1.48505 * 109.46943 * 149.99962 * 3 2 1 7 7 C 1.38818 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00412 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99684 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47204 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.55162 * 305.12542 * 11 10 9 13 13 C 1.53286 * 109.51289 * 184.99975 * 11 10 9 14 14 N 1.47156 * 108.38530 * 187.77537 * 13 11 10 15 15 C 1.34778 * 120.98091 * 230.55756 * 14 13 11 16 16 O 1.21284 * 120.00056 * 359.97329 * 15 14 13 17 17 C 1.50703 * 120.00060 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47279 * 179.97438 * 17 15 14 19 19 N 1.46493 * 109.46845 * 179.97438 * 18 17 15 20 20 C 1.35768 * 119.62717 * 269.72731 * 19 18 17 21 21 C 1.35348 * 120.70188 * 179.72379 * 20 19 18 22 22 C 1.40193 * 119.94974 * 0.52815 * 21 20 19 23 23 C 1.36407 * 119.26293 * 359.75238 * 22 21 20 24 24 C 1.34660 * 119.62555 * 90.00654 * 19 18 17 25 25 O 1.22057 * 119.98099 * 359.97438 * 24 19 18 26 26 C 1.47148 * 118.03649 * 50.53434 * 14 13 11 27 27 C 1.53300 * 108.41473 * 309.44697 * 26 14 13 28 28 O 1.42961 * 109.51360 * 65.25221 * 11 10 9 29 29 H 0.97007 * 119.99847 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00661 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47302 * 59.99540 * 10 9 7 32 32 H 1.08997 * 109.46857 * 299.99901 * 10 9 7 33 33 H 1.08998 * 109.68904 * 68.04960 * 13 11 10 34 34 H 1.09001 * 109.71424 * 307.51023 * 13 11 10 35 35 H 1.09004 * 109.46725 * 300.00147 * 17 15 14 36 36 H 1.08994 * 109.46869 * 59.99449 * 17 15 14 37 37 H 1.08998 * 109.47019 * 300.00318 * 18 17 15 38 38 H 1.08997 * 109.46736 * 59.99906 * 18 17 15 39 39 H 1.08005 * 119.64458 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.02034 * 180.27161 * 21 20 19 41 41 H 1.07997 * 120.36775 * 179.76954 * 22 21 20 42 42 H 1.08002 * 120.34371 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.68336 * 69.19042 * 26 14 13 44 44 H 1.08999 * 109.68144 * 189.70712 * 26 14 13 45 45 H 1.08998 * 109.51580 * 172.24632 * 27 26 14 46 46 H 1.08997 * 109.51046 * 292.39879 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 6 1.0636 -4.8198 -0.0035 12 1 0.3764 -4.7135 0.8359 13 6 1.8248 -6.1443 0.1224 14 7 0.8706 -7.2480 -0.0698 15 6 0.7990 -8.2647 0.8120 16 8 1.5280 -8.2793 1.7812 17 6 -0.1869 -9.3835 0.5938 18 6 -0.0638 -10.4006 1.7301 19 7 -1.0226 -11.4878 1.5182 20 6 -2.2703 -11.3945 2.0453 21 6 -3.1752 -12.3835 1.8583 22 6 -2.8235 -13.5241 1.1229 23 6 -1.5676 -13.6185 0.5989 24 6 -0.6546 -12.5708 0.8077 25 8 0.4723 -12.6422 0.3441 26 6 -0.0034 -7.2085 -1.2530 27 6 -0.6763 -5.8324 -1.3123 28 8 0.3260 -4.8153 -1.2281 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 -0.0023 31 1 2.6840 -3.7150 0.8888 32 1 2.6852 -3.7142 -0.8911 33 1 2.2749 -6.2165 1.1124 34 1 2.6029 -6.1951 -0.6392 35 1 -1.1986 -8.9779 0.5767 36 1 0.0242 -9.8735 -0.3565 37 1 0.9479 -10.8059 1.7468 38 1 -0.2747 -9.9107 2.6807 39 1 -2.5452 -10.5195 2.6157 40 1 -4.1661 -12.2959 2.2788 41 1 -3.5390 -14.3189 0.9727 42 1 -1.2782 -14.4892 0.0291 43 1 0.5903 -7.3660 -2.1534 44 1 -0.7635 -7.9857 -1.1739 45 1 -1.2193 -5.7328 -2.2521 46 1 -1.3698 -5.7300 -0.4777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326987703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:09 Heat of formation + Delta-G solvation = -83.017125 kcal Electronic energy + Delta-G solvation = -28437.476293 eV Core-core repulsion = 24327.422666 eV Total energy + Delta-G solvation = -4110.053627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39348 -41.44958 -39.61901 -37.96892 -36.69631 -36.08199 -35.80482 -33.98299 -32.52839 -31.64923 -30.72777 -29.35009 -27.65600 -26.01730 -24.92192 -24.59211 -23.95224 -23.08860 -22.24260 -20.24747 -19.26683 -18.95250 -18.28365 -17.88847 -17.80633 -17.27420 -17.09891 -16.93129 -16.79738 -16.32262 -16.03438 -15.90035 -15.46226 -15.16697 -15.05971 -14.98022 -14.87403 -14.29372 -14.18840 -13.94871 -13.84317 -13.40568 -13.24174 -13.04780 -12.83728 -12.78363 -12.69422 -12.61810 -12.32198 -12.26802 -12.06560 -11.88557 -11.67129 -11.26390 -11.13975 -11.01300 -10.97039 -10.90764 -9.69419 -9.01974 -8.96156 -7.95017 -5.24439 -0.05938 0.94313 1.40707 1.44172 1.47760 1.49978 1.58316 1.86524 2.55926 2.69862 2.74064 3.31619 3.38872 3.52230 3.61585 3.64795 3.84513 3.89449 3.93401 3.98775 4.03670 4.11772 4.19699 4.24519 4.31332 4.36165 4.40881 4.47981 4.49554 4.64046 4.66157 4.73171 4.73622 4.84909 4.93738 5.07156 5.10003 5.19126 5.22966 5.43588 5.47981 5.68442 6.11480 6.17937 6.22638 6.27016 6.91537 7.00024 7.32845 8.06084 8.31240 9.28608 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.001939 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.354463 B =14440.580230 C =14665.732238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.159 3.841 11 C 0.090 3.910 12 H 0.052 0.948 13 C 0.094 3.906 14 N -0.613 5.613 15 C 0.521 3.479 16 O -0.577 6.577 17 C -0.140 4.140 18 C 0.109 3.891 19 N -0.492 5.492 20 C 0.129 3.871 21 C -0.227 4.227 22 C 0.007 3.993 23 C -0.282 4.282 24 C 0.492 3.508 25 O -0.613 6.613 26 C 0.074 3.926 27 C 0.038 3.962 28 O -0.390 6.390 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.199 0.801 40 H 0.182 0.818 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.087 0.913 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -28.722 2.125 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.031 3.969 12 H 0.070 0.930 13 C -0.030 4.030 14 N -0.347 5.347 15 C 0.310 3.690 16 O -0.457 6.457 17 C -0.180 4.180 18 C -0.014 4.014 19 N -0.201 5.201 20 C 0.003 3.997 21 C -0.249 4.249 22 C -0.015 4.015 23 C -0.303 4.303 24 C 0.298 3.702 25 O -0.501 6.501 26 C -0.048 4.048 27 C -0.038 4.038 28 O -0.309 6.309 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.216 0.784 40 H 0.199 0.801 41 H 0.183 0.817 42 H 0.160 0.840 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.881 -28.529 2.210 30.613 hybrid contribution 0.377 0.898 -0.021 0.974 sum -10.505 -27.630 2.188 29.641 Atomic orbital electron populations 1.69831 1.06645 1.26104 1.59323 1.25615 0.96486 1.01214 1.03555 0.85088 0.77686 0.79203 0.77448 1.21384 1.22010 1.19376 1.19660 0.91583 0.85254 1.41484 0.90490 1.42404 1.05659 1.00797 1.89377 1.20767 0.93186 0.84039 0.98826 1.22430 0.93441 0.93911 0.87076 0.92953 1.22086 0.91944 0.84910 1.04037 1.48237 1.38724 1.22271 1.25419 1.20865 0.83919 0.82849 0.81370 1.90715 1.45512 1.78486 1.31010 1.21908 1.00917 0.93800 1.01425 1.21608 0.93816 0.86170 0.99765 1.45557 1.13354 1.17844 1.43371 1.22767 0.81967 1.01358 0.93636 1.21199 1.02314 0.94539 1.06821 1.21887 0.94496 0.97154 0.87924 1.22113 0.95958 1.00924 1.11321 1.17684 0.88934 0.83547 0.80055 1.90944 1.23586 1.81148 1.54421 1.22713 0.94899 0.99544 0.87625 1.23248 0.90048 0.86184 1.04368 1.88117 1.50997 1.54406 1.37350 0.93958 0.79279 0.93871 0.95375 0.88816 0.89915 0.84588 0.87929 0.90680 0.86259 0.78382 0.80122 0.81665 0.83985 0.89521 0.85383 0.85484 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.74 -39.04 5.55 -343.44 -1.91 -40.94 16 10 C 0.16 6.57 5.93 86.38 0.51 7.08 16 11 C 0.09 3.03 2.81 30.69 0.09 3.12 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C 0.09 2.63 5.93 86.35 0.51 3.14 16 14 N -0.61 -14.01 3.02 -817.35 -2.47 -16.48 16 15 C 0.52 11.99 7.71 87.66 0.68 12.66 16 16 O -0.58 -17.85 15.45 -3.04 -0.05 -17.90 16 17 C -0.14 -2.05 4.40 29.85 0.13 -1.91 16 18 C 0.11 1.78 4.62 86.38 0.40 2.17 16 19 N -0.49 -7.04 2.58 -651.00 -1.68 -8.72 16 20 C 0.13 0.73 10.28 83.42 0.86 1.59 16 21 C -0.23 -0.80 10.01 22.08 0.22 -0.58 16 22 C 0.01 0.05 10.10 22.32 0.23 0.27 16 23 C -0.28 -4.27 9.99 22.40 0.22 -4.05 16 24 C 0.49 10.62 7.41 84.82 0.63 11.25 16 25 O -0.61 -19.49 16.64 -5.50 -0.09 -19.58 16 26 C 0.07 1.21 6.54 86.36 0.56 1.78 16 27 C 0.04 0.82 6.99 72.08 0.50 1.32 16 28 O -0.39 -13.02 10.34 -148.98 -1.54 -14.56 16 29 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 30 H 0.38 21.16 7.67 -92.71 -0.71 20.45 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 2.81 7.08 -2.39 -0.02 2.79 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.14 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.10 1.60 8.01 -2.39 -0.02 1.58 16 37 H 0.07 1.80 7.35 -2.39 -0.02 1.79 16 38 H 0.12 1.50 7.96 -2.39 -0.02 1.48 16 39 H 0.20 -0.35 8.03 -2.91 -0.02 -0.37 16 40 H 0.18 -0.55 8.06 -2.91 -0.02 -0.58 16 41 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.13 1.12 6.05 -2.39 -0.01 1.10 16 45 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -86.68 382.85 1.70 -84.98 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.28 Total: 23.83 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.85 Total: 20.46 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -5.78 Total: -126.00 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.68 Total: -52.03 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -86.68 1.70 -84.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326987703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.961 kcal (2) G-P(sol) polarization free energy of solvation -86.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds