Wall clock time and date at job start Tue Mar 31 2020 18:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00374 * 2 1 4 4 H 1.48509 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46933 * 300.00039 * 3 2 1 6 6 H 1.48496 * 109.46891 * 60.00345 * 3 2 1 7 7 C 1.38820 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00384 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99607 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00120 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47306 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.51311 * 59.89923 * 11 10 9 13 13 C 1.53293 * 109.51363 * 180.02562 * 11 10 9 14 14 N 1.47153 * 108.38685 * 172.27624 * 13 11 10 15 15 C 1.34771 * 120.98137 * 129.44129 * 14 13 11 16 16 O 1.21279 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99847 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47183 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.47122 * 179.97438 * 18 17 15 20 20 C 1.35764 * 119.62421 * 90.00125 * 19 18 17 21 21 C 1.35340 * 120.70198 * 179.70005 * 20 19 18 22 22 C 1.40202 * 119.95004 * 0.02562 * 21 20 19 23 23 C 1.36398 * 119.26318 * 0.02562 * 22 21 20 24 24 C 1.34654 * 119.62250 * 269.72503 * 19 18 17 25 25 O 1.22066 * 119.98962 * 0.25788 * 24 19 18 26 26 C 1.47151 * 118.03436 * 309.71271 * 14 13 11 27 27 C 1.52885 * 108.60694 * 50.22562 * 26 14 13 28 28 O 1.42960 * 109.29742 * 307.93427 * 27 26 14 29 29 H 0.96999 * 119.99400 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99839 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46696 * 59.99540 * 10 9 7 32 32 H 1.09002 * 109.46852 * 300.00159 * 10 9 7 33 33 H 1.09007 * 109.68229 * 52.54817 * 13 11 10 34 34 H 1.09003 * 109.68184 * 291.99842 * 13 11 10 35 35 H 1.08995 * 109.47341 * 59.99851 * 17 15 14 36 36 H 1.08999 * 109.46584 * 299.99835 * 17 15 14 37 37 H 1.09000 * 109.47385 * 59.99645 * 18 17 15 38 38 H 1.09001 * 109.47112 * 300.00269 * 18 17 15 39 39 H 1.08003 * 119.64373 * 359.71904 * 20 19 18 40 40 H 1.08002 * 120.02654 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.36795 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.34887 * 179.97438 * 23 22 21 43 43 H 1.08991 * 109.68279 * 170.00771 * 26 14 13 44 44 H 1.09009 * 109.68133 * 290.56350 * 26 14 13 45 45 H 1.09005 * 109.57928 * 187.92131 * 27 26 14 46 46 H 1.08994 * 109.40429 * 67.84221 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0635 -4.8198 -0.0012 12 1 0.4357 -4.7614 -0.8902 13 6 1.8290 -6.1479 -0.0005 14 7 0.8617 -7.2410 0.1865 15 6 0.8490 -8.3052 -0.6403 16 8 1.6423 -8.3719 -1.5552 17 6 -0.1518 -9.4119 -0.4286 18 6 0.0465 -10.4899 -1.4962 19 7 -0.9260 -11.5660 -1.2901 20 6 -2.1371 -11.5020 -1.9002 21 6 -3.0495 -12.4870 -1.7298 22 6 -2.7476 -13.5876 -0.9155 23 6 -1.5307 -13.6496 -0.3025 24 6 -0.6063 -12.6100 -0.5021 25 8 0.4868 -12.6535 0.0394 26 6 -0.0953 -7.1348 1.2993 27 6 -0.7635 -5.7610 1.2386 28 8 0.2434 -4.7487 1.1677 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 0.0002 31 1 2.6845 -3.7146 0.8895 32 1 2.6845 -3.7146 -0.8905 33 1 2.5524 -6.1543 0.8148 34 1 2.3460 -6.2741 -0.9518 35 1 -1.1614 -9.0081 -0.5037 36 1 -0.0074 -9.8481 0.5598 37 1 1.0561 -10.8938 -1.4216 38 1 -0.0980 -10.0534 -2.4845 39 1 -2.3747 -10.6563 -2.5285 40 1 -4.0095 -12.4251 -2.2208 41 1 -3.4709 -14.3772 -0.7745 42 1 -1.2799 -14.4892 0.3289 43 1 -0.8519 -7.9141 1.2084 44 1 0.4311 -7.2423 2.2478 45 1 -1.3696 -5.6099 2.1319 46 1 -1.3983 -5.7058 0.3543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326987705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:13 Heat of formation + Delta-G solvation = -55.514655 kcal Electronic energy + Delta-G solvation = -28441.758489 eV Core-core repulsion = 24332.897459 eV Total energy + Delta-G solvation = -4108.861030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78165 -40.46048 -38.49659 -37.26932 -35.50576 -35.14532 -34.43402 -32.43694 -31.54241 -30.28273 -30.11387 -28.23447 -26.37240 -24.95859 -24.07149 -23.54863 -22.81307 -22.12176 -20.88774 -19.31346 -18.28953 -17.73159 -17.31065 -17.01750 -16.69391 -16.56983 -16.21603 -16.01906 -15.65095 -15.15342 -14.95394 -14.65349 -14.56317 -14.41247 -14.08460 -13.80258 -13.22465 -13.13220 -13.08970 -12.79051 -12.68855 -12.49907 -12.42132 -12.27280 -12.03770 -11.71044 -11.59760 -11.05537 -10.91777 -10.81774 -10.63842 -10.50972 -10.31351 -10.12072 -9.94499 -9.93832 -9.69422 -8.87993 -8.63767 -8.41253 -6.90082 -5.74008 -3.02574 0.38920 1.45479 2.11324 2.33648 2.71360 3.24269 3.45046 3.50517 3.52888 3.88345 4.04733 4.19071 4.21157 4.33619 4.44213 4.56374 4.63021 4.68641 4.76477 4.79623 4.85159 4.92990 5.00975 5.07390 5.22599 5.26703 5.39880 5.41007 5.53971 5.58831 5.60212 5.64114 5.64782 5.82686 5.83807 5.91438 6.07349 6.20413 6.25799 6.53518 6.66183 6.67346 7.10451 7.40916 7.64821 7.71935 7.86331 8.44213 9.56132 10.13000 10.49029 11.48883 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.001935 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.646679 B =14466.457984 C =14717.023771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.611 5.611 15 C 0.523 3.477 16 O -0.539 6.539 17 C -0.154 4.154 18 C 0.106 3.894 19 N -0.496 5.496 20 C 0.135 3.865 21 C -0.235 4.235 22 C -0.017 4.017 23 C -0.245 4.245 24 C 0.510 3.490 25 O -0.549 6.549 26 C 0.070 3.930 27 C 0.046 3.954 28 O -0.355 6.355 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -27.983 -1.875 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.345 5.345 15 C 0.311 3.689 16 O -0.416 6.416 17 C -0.195 4.195 18 C -0.016 4.016 19 N -0.207 5.207 20 C 0.007 3.993 21 C -0.258 4.258 22 C -0.038 4.038 23 C -0.267 4.267 24 C 0.312 3.688 25 O -0.431 6.431 26 C -0.053 4.053 27 C -0.032 4.032 28 O -0.273 6.273 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.417 -27.762 -1.873 29.070 hybrid contribution -0.224 0.710 -0.053 0.747 sum -8.640 -27.052 -1.926 28.463 Atomic orbital electron populations 1.69684 1.05119 1.25443 1.57801 1.24750 0.95545 0.97700 1.03063 0.86100 0.78789 0.84063 0.77138 1.20532 1.21915 1.21874 1.19283 0.91072 0.84069 1.42551 0.91058 1.42216 1.06048 0.99449 1.89323 1.20631 0.92356 0.84686 0.98856 1.22802 0.92998 0.94250 0.88421 0.91909 1.22386 0.91567 0.85480 1.04374 1.48141 1.35276 1.20826 1.30243 1.20230 0.84693 0.82450 0.81560 1.90729 1.40950 1.78444 1.31476 1.21965 1.00112 0.95150 1.02261 1.21735 0.94485 0.85933 0.99463 1.45625 1.14265 1.20846 1.39928 1.22051 0.84053 0.99335 0.93838 1.20688 1.01485 0.96362 1.07255 1.21470 0.95587 0.96165 0.90604 1.22158 0.95279 1.01402 1.07843 1.17233 0.88989 0.82458 0.80110 1.90995 1.23634 1.78749 1.49716 1.22477 0.92834 0.99697 0.90286 1.22835 0.90929 0.86562 1.02893 1.88184 1.46101 1.50480 1.42569 0.93622 0.77852 0.95319 0.94624 0.90253 0.87899 0.88293 0.87868 0.87099 0.87975 0.81972 0.83681 0.84796 0.83489 0.89232 0.90106 0.87641 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.79 9.99 -15.05 -0.15 -6.94 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.85 5.50 -59.91 -0.33 -19.18 16 10 C 0.16 3.32 5.96 -4.04 -0.02 3.30 16 11 C 0.07 1.24 2.86 -26.58 -0.08 1.16 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 13 C 0.08 1.19 5.93 -3.53 -0.02 1.17 16 14 N -0.61 -7.36 3.03 -172.52 -0.52 -7.88 16 15 C 0.52 6.26 7.71 -10.99 -0.08 6.18 16 16 O -0.54 -8.23 15.45 5.56 0.09 -8.14 16 17 C -0.15 -1.27 4.40 -27.88 -0.12 -1.40 16 18 C 0.11 0.90 4.62 -4.04 -0.02 0.88 16 19 N -0.50 -3.89 2.58 -119.77 -0.31 -4.20 16 20 C 0.13 0.63 10.28 -16.84 -0.17 0.46 16 21 C -0.23 -0.94 10.01 -39.88 -0.40 -1.34 16 22 C -0.02 -0.08 10.10 -39.51 -0.40 -0.48 16 23 C -0.25 -1.91 9.99 -39.38 -0.39 -2.30 16 24 C 0.51 5.39 7.41 -15.45 -0.11 5.27 16 25 O -0.55 -8.08 16.64 4.86 0.08 -8.00 16 26 C 0.07 0.67 6.51 -3.75 -0.02 0.64 16 27 C 0.05 0.54 6.97 37.10 0.26 0.79 16 28 O -0.36 -6.05 10.14 -35.23 -0.36 -6.41 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 10.67 7.55 -40.82 -0.31 10.37 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 35 H 0.10 0.57 7.65 -51.93 -0.40 0.17 16 36 H 0.10 0.89 8.02 -51.93 -0.42 0.47 16 37 H 0.11 1.24 7.34 -51.93 -0.38 0.86 16 38 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 39 H 0.16 0.28 8.04 -52.48 -0.42 -0.14 16 40 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 41 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 44 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -37.68 382.52 -8.52 -46.20 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.79 Total: 5.18 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.84 Total: 6.86 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.44 Total: -59.08 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.19 Total: -22.55 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.68 -8.52 -46.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326987705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal (2) G-P(sol) polarization free energy of solvation -37.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds