Wall clock time and date at job start Tue Mar 31 2020 18:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00374 * 2 1 4 4 H 1.48509 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46933 * 300.00039 * 3 2 1 6 6 H 1.48496 * 109.46891 * 60.00345 * 3 2 1 7 7 C 1.38820 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00384 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99607 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00120 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47306 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.51311 * 59.89923 * 11 10 9 13 13 C 1.53293 * 109.51363 * 180.02562 * 11 10 9 14 14 N 1.47153 * 108.38685 * 172.27624 * 13 11 10 15 15 C 1.34771 * 120.98137 * 129.44129 * 14 13 11 16 16 O 1.21279 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99847 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47183 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.47122 * 179.97438 * 18 17 15 20 20 C 1.35764 * 119.62421 * 90.00125 * 19 18 17 21 21 C 1.35340 * 120.70198 * 179.70005 * 20 19 18 22 22 C 1.40202 * 119.95004 * 0.02562 * 21 20 19 23 23 C 1.36398 * 119.26318 * 0.02562 * 22 21 20 24 24 C 1.34654 * 119.62250 * 269.72503 * 19 18 17 25 25 O 1.22066 * 119.98962 * 0.25788 * 24 19 18 26 26 C 1.47151 * 118.03436 * 309.71271 * 14 13 11 27 27 C 1.52885 * 108.60694 * 50.22562 * 26 14 13 28 28 O 1.42960 * 109.29742 * 307.93427 * 27 26 14 29 29 H 0.96999 * 119.99400 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99839 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46696 * 59.99540 * 10 9 7 32 32 H 1.09002 * 109.46852 * 300.00159 * 10 9 7 33 33 H 1.09007 * 109.68229 * 52.54817 * 13 11 10 34 34 H 1.09003 * 109.68184 * 291.99842 * 13 11 10 35 35 H 1.08995 * 109.47341 * 59.99851 * 17 15 14 36 36 H 1.08999 * 109.46584 * 299.99835 * 17 15 14 37 37 H 1.09000 * 109.47385 * 59.99645 * 18 17 15 38 38 H 1.09001 * 109.47112 * 300.00269 * 18 17 15 39 39 H 1.08003 * 119.64373 * 359.71904 * 20 19 18 40 40 H 1.08002 * 120.02654 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.36795 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.34887 * 179.97438 * 23 22 21 43 43 H 1.08991 * 109.68279 * 170.00771 * 26 14 13 44 44 H 1.09009 * 109.68133 * 290.56350 * 26 14 13 45 45 H 1.09005 * 109.57928 * 187.92131 * 27 26 14 46 46 H 1.08994 * 109.40429 * 67.84221 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0635 -4.8198 -0.0012 12 1 0.4357 -4.7614 -0.8902 13 6 1.8290 -6.1479 -0.0005 14 7 0.8617 -7.2410 0.1865 15 6 0.8490 -8.3052 -0.6403 16 8 1.6423 -8.3719 -1.5552 17 6 -0.1518 -9.4119 -0.4286 18 6 0.0465 -10.4899 -1.4962 19 7 -0.9260 -11.5660 -1.2901 20 6 -2.1371 -11.5020 -1.9002 21 6 -3.0495 -12.4870 -1.7298 22 6 -2.7476 -13.5876 -0.9155 23 6 -1.5307 -13.6496 -0.3025 24 6 -0.6063 -12.6100 -0.5021 25 8 0.4868 -12.6535 0.0394 26 6 -0.0953 -7.1348 1.2993 27 6 -0.7635 -5.7610 1.2386 28 8 0.2434 -4.7487 1.1677 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 0.0002 31 1 2.6845 -3.7146 0.8895 32 1 2.6845 -3.7146 -0.8905 33 1 2.5524 -6.1543 0.8148 34 1 2.3460 -6.2741 -0.9518 35 1 -1.1614 -9.0081 -0.5037 36 1 -0.0074 -9.8481 0.5598 37 1 1.0561 -10.8938 -1.4216 38 1 -0.0980 -10.0534 -2.4845 39 1 -2.3747 -10.6563 -2.5285 40 1 -4.0095 -12.4251 -2.2208 41 1 -3.4709 -14.3772 -0.7745 42 1 -1.2799 -14.4892 0.3289 43 1 -0.8519 -7.9141 1.2084 44 1 0.4311 -7.2423 2.2478 45 1 -1.3696 -5.6099 2.1319 46 1 -1.3983 -5.7058 0.3543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326987705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:12 Heat of formation + Delta-G solvation = -82.886145 kcal Electronic energy + Delta-G solvation = -28442.945406 eV Core-core repulsion = 24332.897459 eV Total energy + Delta-G solvation = -4110.047947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39309 -41.45680 -39.62715 -37.96781 -36.69459 -36.08165 -35.79969 -33.98841 -32.52793 -31.65512 -30.72864 -29.37361 -27.65468 -26.01984 -24.90948 -24.58811 -23.95898 -23.08658 -22.22610 -20.24789 -19.26766 -18.95183 -18.28332 -17.88862 -17.80471 -17.27245 -17.09935 -16.93168 -16.79250 -16.32672 -16.04390 -15.90573 -15.46435 -15.16760 -15.05874 -14.98273 -14.87049 -14.29462 -14.18814 -13.95624 -13.83692 -13.39751 -13.24116 -13.04626 -12.84879 -12.81092 -12.68358 -12.61376 -12.31918 -12.25487 -12.02860 -11.89421 -11.66145 -11.25882 -11.13766 -11.01564 -10.97490 -10.90489 -9.69570 -9.01320 -8.96169 -7.94893 -5.24135 -0.05851 0.94310 1.40754 1.44202 1.47892 1.48915 1.59157 1.86398 2.55892 2.69887 2.74520 3.31567 3.38991 3.52683 3.61816 3.64788 3.84787 3.89514 3.94697 3.98713 4.03386 4.11812 4.19768 4.24590 4.31681 4.36470 4.41141 4.48005 4.49310 4.63999 4.66256 4.73288 4.74004 4.85135 4.93588 5.07411 5.10017 5.19116 5.22973 5.43616 5.48384 5.68483 6.11512 6.18030 6.22787 6.27926 6.91537 7.00033 7.33291 8.06928 8.32107 9.28947 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.001935 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.646679 B =14466.457984 C =14717.023771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.159 3.841 11 C 0.090 3.910 12 H 0.053 0.947 13 C 0.094 3.906 14 N -0.613 5.613 15 C 0.521 3.479 16 O -0.577 6.577 17 C -0.141 4.141 18 C 0.109 3.891 19 N -0.492 5.492 20 C 0.129 3.871 21 C -0.227 4.227 22 C 0.007 3.993 23 C -0.282 4.282 24 C 0.492 3.508 25 O -0.613 6.613 26 C 0.074 3.926 27 C 0.038 3.962 28 O -0.389 6.389 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.200 0.800 40 H 0.182 0.818 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 -28.865 -2.361 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.031 3.969 12 H 0.071 0.929 13 C -0.030 4.030 14 N -0.346 5.346 15 C 0.310 3.690 16 O -0.457 6.457 17 C -0.181 4.181 18 C -0.014 4.014 19 N -0.201 5.201 20 C 0.003 3.997 21 C -0.249 4.249 22 C -0.015 4.015 23 C -0.303 4.303 24 C 0.298 3.702 25 O -0.501 6.501 26 C -0.048 4.048 27 C -0.039 4.039 28 O -0.308 6.308 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.216 0.784 40 H 0.199 0.801 41 H 0.183 0.817 42 H 0.160 0.840 43 H 0.146 0.854 44 H 0.104 0.896 45 H 0.144 0.856 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.727 -28.680 -2.365 30.712 hybrid contribution 0.368 0.905 0.052 0.978 sum -10.359 -27.775 -2.312 29.734 Atomic orbital electron populations 1.69838 1.06642 1.26011 1.59400 1.25612 0.96484 1.01195 1.03607 0.85026 0.78187 0.79540 0.76699 1.19044 1.21878 1.21965 1.19702 0.91579 0.85262 1.41325 0.90492 1.42389 1.05724 1.00744 1.89317 1.20778 0.93157 0.84105 0.98804 1.22440 0.92335 0.93883 0.88254 0.92860 1.22091 0.91725 0.85090 1.04081 1.48229 1.35262 1.20192 1.30935 1.20856 0.84693 0.82796 0.80628 1.90713 1.42576 1.79246 1.33166 1.21910 1.00637 0.93532 1.01988 1.21613 0.93229 0.86026 1.00493 1.45554 1.15212 1.19842 1.39514 1.22764 0.82561 1.00887 0.93507 1.21200 1.02519 0.95133 1.06028 1.21888 0.94451 0.96838 0.88291 1.22114 0.96506 1.01361 1.10340 1.17687 0.88745 0.83549 0.80248 1.90947 1.26107 1.80254 1.52804 1.22627 0.93088 0.99521 0.89541 1.23155 0.90113 0.86418 1.04176 1.88117 1.47382 1.52971 1.42318 0.93972 0.79190 0.95437 0.93914 0.90006 0.88731 0.84574 0.87950 0.90687 0.86225 0.78358 0.80117 0.81670 0.83996 0.85357 0.89608 0.85554 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 2 C -0.08 -4.49 5.50 84.87 0.47 -4.03 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 7 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.74 -38.98 5.50 -343.45 -1.89 -40.87 16 10 C 0.16 6.55 5.96 86.38 0.51 7.07 16 11 C 0.09 3.01 2.86 30.69 0.09 3.10 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 13 C 0.09 2.62 5.93 86.35 0.51 3.14 16 14 N -0.61 -13.98 3.03 -818.14 -2.48 -16.46 16 15 C 0.52 11.94 7.71 87.66 0.68 12.61 16 16 O -0.58 -17.73 15.45 -3.03 -0.05 -17.78 16 17 C -0.14 -2.04 4.40 29.85 0.13 -1.91 16 18 C 0.11 1.76 4.62 86.38 0.40 2.16 16 19 N -0.49 -7.01 2.58 -650.98 -1.68 -8.69 16 20 C 0.13 0.72 10.28 83.42 0.86 1.57 16 21 C -0.23 -0.79 10.01 22.08 0.22 -0.57 16 22 C 0.01 0.05 10.10 22.32 0.23 0.27 16 23 C -0.28 -4.27 9.99 22.40 0.22 -4.05 16 24 C 0.49 10.62 7.41 84.82 0.63 11.25 16 25 O -0.61 -19.50 16.64 -5.53 -0.09 -19.60 16 26 C 0.07 1.22 6.51 86.22 0.56 1.78 16 27 C 0.04 0.82 6.97 71.94 0.50 1.32 16 28 O -0.39 -13.09 10.14 -148.98 -1.51 -14.60 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.38 21.22 7.55 -92.71 -0.70 20.52 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 34 H 0.09 2.80 7.08 -2.39 -0.02 2.79 16 35 H 0.14 0.96 7.65 -2.39 -0.02 0.95 16 36 H 0.10 1.59 8.02 -2.39 -0.02 1.57 16 37 H 0.07 1.80 7.34 -2.39 -0.02 1.78 16 38 H 0.12 1.48 7.97 -2.39 -0.02 1.46 16 39 H 0.20 -0.38 8.04 -2.91 -0.02 -0.40 16 40 H 0.18 -0.57 8.06 -2.91 -0.02 -0.59 16 41 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.13 1.13 6.05 -2.39 -0.01 1.11 16 44 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -86.76 382.52 1.75 -85.00 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.29 Total: 23.66 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.85 Total: 20.41 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -5.76 Total: -125.90 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -1.65 Total: -51.97 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.76 1.75 -85.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326987705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.117 kcal (2) G-P(sol) polarization free energy of solvation -86.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds