Wall clock time and date at job start Tue Mar 31 2020 18:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47199 * 269.99934 * 3 2 1 5 5 H 1.48497 * 109.47446 * 30.00133 * 3 2 1 6 6 H 1.48500 * 109.47176 * 150.00447 * 3 2 1 7 7 C 1.38816 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99959 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99963 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47027 * 179.97438 * 10 9 7 12 12 C 1.53787 * 113.61182 * 175.00032 * 11 10 9 13 13 C 1.53783 * 87.07885 * 139.98109 * 12 11 10 14 14 N 1.46503 * 113.61371 * 89.11795 * 13 12 11 15 15 C 1.34778 * 119.99914 * 156.53107 * 14 13 12 16 16 O 1.21287 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99987 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47441 * 179.97438 * 17 15 14 19 19 N 1.46493 * 109.47251 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99797 * 180.02562 * 19 18 17 21 21 O 1.21695 * 120.00180 * 359.97438 * 20 19 18 22 22 C 1.46661 * 119.99801 * 179.97438 * 20 19 18 23 23 C 1.36547 * 125.98702 * 179.97438 * 22 20 19 24 24 C 1.40360 * 106.70833 * 180.02562 * 23 22 20 25 25 C 1.35131 * 107.11647 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76477 * 0.02562 * 25 24 23 27 27 C 1.53781 * 87.17269 * 334.52381 * 13 12 11 28 28 H 0.96991 * 120.00068 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00573 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46894 * 59.99850 * 10 9 7 31 31 H 1.08998 * 109.47189 * 300.00153 * 10 9 7 32 32 H 1.09000 * 112.85123 * 43.80327 * 11 10 9 33 33 H 1.09004 * 113.61212 * 25.43647 * 12 11 10 34 34 H 1.08994 * 113.61195 * 254.53100 * 12 11 10 35 35 H 1.09001 * 113.61366 * 219.93312 * 13 12 11 36 36 H 0.96996 * 119.99579 * 336.52234 * 14 13 12 37 37 H 1.09007 * 109.47452 * 59.99486 * 17 15 14 38 38 H 1.09000 * 109.46924 * 299.99574 * 17 15 14 39 39 H 1.09007 * 109.46939 * 59.99513 * 18 17 15 40 40 H 1.09000 * 109.46993 * 299.99873 * 18 17 15 41 41 H 0.96998 * 120.00272 * 359.97438 * 19 18 17 42 42 H 1.08005 * 126.64485 * 359.97438 * 23 22 20 43 43 H 1.08003 * 126.44277 * 180.02562 * 24 23 22 44 44 H 1.07997 * 125.61851 * 180.26772 * 25 24 23 45 45 H 1.08996 * 113.61064 * 140.02692 * 27 13 12 46 46 H 1.09002 * 113.61753 * 270.92493 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.4786 -3.4588 0.1203 13 6 7.4234 -2.8209 -0.9118 14 7 8.4707 -1.9892 -0.3136 15 6 9.6149 -1.7584 -0.9873 16 8 9.7778 -2.2396 -2.0887 17 6 10.6919 -0.9025 -0.3723 18 6 11.8756 -0.8010 -1.3363 19 7 12.9228 0.0305 -0.7381 20 6 14.0671 0.2613 -1.4118 21 8 14.2306 -0.2216 -2.5168 22 6 15.1153 1.0942 -0.8131 23 6 16.3162 1.4057 -1.3834 24 6 17.0001 2.2182 -0.4658 25 6 16.1967 2.3658 0.6107 26 8 15.0620 1.6869 0.3977 27 6 6.2109 -2.0188 -1.4130 28 1 -0.4850 0.8400 0.0004 29 1 3.8647 -0.3622 -0.0014 30 1 3.8484 -3.0427 -0.8909 31 1 3.8492 -3.0423 0.8891 32 1 5.9006 -1.4009 0.6923 33 1 5.9832 -4.3604 -0.2399 34 1 6.9293 -3.5866 1.1045 35 1 7.8118 -3.5286 -1.6443 36 1 8.3405 -1.6047 0.5673 37 1 11.0235 -1.3524 0.5636 38 1 10.2963 0.0940 -0.1761 39 1 11.5443 -0.3513 -2.2724 40 1 12.2712 -1.7977 -1.5321 41 1 12.7924 0.4157 0.1425 42 1 16.6714 1.0877 -2.3526 43 1 17.9833 2.6458 -0.5959 44 1 16.4294 2.9400 1.4952 45 1 6.4457 -0.9849 -1.6660 46 1 5.6424 -2.5274 -2.1916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328956232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:53 Heat of formation + Delta-G solvation = -53.176454 kcal Electronic energy + Delta-G solvation = -26985.291269 eV Core-core repulsion = 22876.531631 eV Total energy + Delta-G solvation = -4108.759638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.64897 -41.36318 -40.60566 -39.53504 -36.58055 -36.36693 -34.46630 -34.06559 -33.23791 -32.34017 -30.59607 -28.83910 -26.62336 -26.07718 -24.76018 -23.61731 -22.89994 -22.68358 -21.86206 -21.30643 -20.47170 -19.61691 -19.47023 -18.27967 -17.48625 -17.31318 -16.96609 -16.85297 -16.76056 -16.61680 -16.03805 -15.82304 -15.63052 -15.24203 -15.09375 -14.69685 -14.63432 -14.31468 -14.12290 -13.96612 -13.85478 -13.56909 -13.49645 -13.35270 -13.01217 -12.96625 -12.74135 -12.52064 -12.16432 -11.87715 -11.71673 -11.64933 -11.39605 -11.17371 -11.06767 -10.97785 -10.89089 -10.41511 -10.03072 -9.66311 -9.27520 -8.02983 -5.36009 -0.00826 1.36063 1.41322 1.41399 1.48464 1.53797 1.58807 1.95320 2.03950 2.40491 2.48365 3.28242 3.47933 3.53208 3.59722 3.75948 3.87408 3.89688 3.94147 3.97166 4.05066 4.12247 4.12680 4.47112 4.55936 4.60355 4.74551 4.79213 4.82801 4.86547 4.90525 4.91643 4.93423 4.95713 5.00082 5.13759 5.15412 5.26636 5.36204 5.37856 5.67894 5.76683 5.80111 6.21374 6.34475 6.55229 6.92798 7.08749 7.24762 7.85922 8.05084 9.18754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.001701 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.499973 B =16456.569483 C =17631.501136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.113 4.113 12 C -0.117 4.117 13 C 0.124 3.876 14 N -0.698 5.698 15 C 0.516 3.484 16 O -0.586 6.586 17 C -0.139 4.139 18 C 0.137 3.863 19 N -0.703 5.703 20 C 0.599 3.401 21 O -0.564 6.564 22 C -0.109 4.109 23 C -0.128 4.128 24 C -0.237 4.237 25 C 0.015 3.985 26 O -0.167 6.167 27 C -0.147 4.147 28 H 0.258 0.742 29 H 0.366 0.634 30 H 0.021 0.979 31 H 0.026 0.974 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.418 0.582 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.422 0.578 42 H 0.155 0.845 43 H 0.181 0.819 44 H 0.257 0.743 45 H 0.059 0.941 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.199 3.396 7.292 39.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.369 4.369 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.155 4.155 13 C 0.018 3.982 14 N -0.349 5.349 15 C 0.303 3.697 16 O -0.466 6.466 17 C -0.179 4.179 18 C 0.013 3.987 19 N -0.355 5.355 20 C 0.386 3.614 21 O -0.445 6.445 22 C -0.161 4.161 23 C -0.149 4.149 24 C -0.256 4.256 25 C -0.055 4.055 26 O -0.062 6.062 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.199 0.801 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.256 0.744 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.260 0.740 42 H 0.172 0.828 43 H 0.198 0.802 44 H 0.272 0.728 45 H 0.077 0.923 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 37.928 2.536 5.947 38.475 hybrid contribution -0.402 1.256 0.106 1.323 sum 37.527 3.792 6.053 38.200 Atomic orbital electron populations 1.69896 1.07246 1.26706 1.59762 1.25564 0.96167 1.01456 1.02634 0.85354 0.78828 0.79301 0.77962 1.20845 1.22203 1.17023 1.19085 0.83044 0.93429 1.41297 0.92816 1.42707 1.02290 1.04387 1.90894 1.20827 0.90592 0.87146 0.97933 1.22816 0.93066 0.99650 0.97654 1.23205 0.95149 0.97109 1.00055 1.21729 0.86682 0.93037 0.96727 1.45578 1.15802 1.51766 1.21780 1.20912 0.83275 0.80485 0.84987 1.90753 1.80677 1.52909 1.22244 1.21764 0.92523 1.02903 1.00699 1.20947 0.86634 0.94965 0.96153 1.45670 1.15944 1.51860 1.22044 1.16781 0.81188 0.79234 0.84149 1.90894 1.80116 1.52601 1.20909 1.21719 0.99206 1.07262 0.87924 1.22275 0.92849 0.98219 1.01570 1.22227 1.03964 1.04793 0.94615 1.25402 0.82501 0.95701 1.01847 1.84044 1.38911 1.51662 1.31596 1.23514 0.97128 1.00710 0.97268 0.93371 0.80092 0.96120 0.95637 0.88304 0.88134 0.88520 0.89291 0.74403 0.84300 0.85028 0.92518 0.91976 0.74048 0.82761 0.80169 0.72764 0.92252 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.58 13.97 21.65 0.30 -63.28 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.96 45.10 27.73 68.60 1.90 47.00 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 7 C -0.24 -13.65 10.47 84.04 0.88 -12.77 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.76 -34.76 5.41 -343.44 -1.86 -36.62 16 10 C 0.16 5.77 6.10 86.38 0.53 6.30 16 11 C -0.11 -2.81 3.65 -10.17 -0.04 -2.84 16 12 C -0.12 -2.10 7.38 31.12 0.23 -1.87 16 13 C 0.12 2.49 4.30 45.52 0.20 2.69 16 14 N -0.70 -10.60 5.26 -440.03 -2.32 -12.92 16 15 C 0.52 9.40 7.83 87.65 0.69 10.09 16 16 O -0.59 -16.91 15.60 -3.05 -0.05 -16.96 16 17 C -0.14 -1.27 5.81 29.85 0.17 -1.09 16 18 C 0.14 2.26 4.96 86.38 0.43 2.69 16 19 N -0.70 -9.68 5.55 -467.10 -2.59 -12.27 16 20 C 0.60 12.28 7.79 86.44 0.67 12.95 16 21 O -0.56 -16.51 16.86 -4.33 -0.07 -16.58 16 22 C -0.11 -1.79 7.13 24.08 0.17 -1.62 16 23 C -0.13 -1.91 10.62 22.39 0.24 -1.67 16 24 C -0.24 -1.91 10.87 22.07 0.24 -1.67 16 25 C 0.01 0.08 12.08 67.10 0.81 0.89 16 26 O -0.17 -1.81 10.40 -5.01 -0.05 -1.86 16 27 C -0.15 -3.70 7.45 31.21 0.23 -3.47 16 28 H 0.26 15.79 8.31 -92.72 -0.77 15.02 16 29 H 0.37 15.83 5.53 -92.71 -0.51 15.31 16 30 H 0.02 0.78 7.85 -2.38 -0.02 0.76 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 1.80 8.10 -2.38 -0.02 1.78 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 2.07 7.50 -2.39 -0.02 2.05 16 36 H 0.42 3.68 8.70 -92.71 -0.81 2.88 16 37 H 0.14 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 40 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 41 H 0.42 2.88 8.23 -92.71 -0.76 2.11 16 42 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 43 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.26 -1.26 8.06 -2.91 -0.02 -1.28 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 2.24 7.90 -2.39 -0.02 2.22 16 Total: -1.00 -87.28 392.87 0.07 -87.22 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -1.11 Total: 21.15 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.92 Total: 5.11 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.46 Total: -125.09 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.17 Total: -35.40 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -87.28 0.07 -87.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328956232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.041 kcal (2) G-P(sol) polarization free energy of solvation -87.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds