Wall clock time and date at job start Tue Mar 31 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48487 * 109.47124 * 271.24244 * 3 2 1 5 5 H 1.48506 * 109.47041 * 31.24468 * 3 2 1 6 6 H 1.48507 * 109.46965 * 151.23931 * 3 2 1 7 7 C 1.37872 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99965 * 358.80678 * 7 2 1 9 9 C 1.50703 * 120.00099 * 178.80537 * 7 2 1 10 10 C 1.53005 * 115.54953 * 87.33578 * 9 7 2 11 11 N 1.46499 * 109.47117 * 32.55990 * 10 9 7 12 12 C 1.34773 * 120.00006 * 185.62499 * 11 10 9 13 13 O 1.21354 * 120.00046 * 4.87700 * 12 11 10 14 14 C 1.49450 * 120.00257 * 184.87355 * 12 11 10 15 15 O 1.21354 * 120.00099 * 354.86302 * 14 12 11 16 16 N 1.34773 * 120.00263 * 174.86693 * 14 12 11 17 17 C 1.46505 * 120.00108 * 180.02562 * 16 14 12 18 18 H 1.09000 * 110.85649 * 322.66097 * 17 16 14 19 19 C 1.54631 * 110.96645 * 86.45118 * 17 16 14 20 20 C 1.51280 * 104.19449 * 93.36040 * 19 17 16 21 21 O 1.21286 * 124.93941 * 196.27051 * 20 19 17 22 22 N 1.34415 * 110.11740 * 16.25139 * 20 19 17 23 23 C 1.46501 * 124.34723 * 180.14502 * 22 20 19 24 24 C 1.52994 * 117.50278 * 8.64420 * 23 22 20 25 25 C 1.52994 * 117.50010 * 300.01798 * 23 22 20 26 26 C 1.46765 * 111.29952 * 0.40276 * 22 20 19 27 27 C 1.52997 * 117.51872 * 233.03311 * 9 7 2 28 28 C 1.52996 * 117.50114 * 301.66430 * 9 7 2 29 29 H 0.97000 * 120.00051 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46829 * 272.56142 * 10 9 7 31 31 H 1.08995 * 109.46923 * 152.55587 * 10 9 7 32 32 H 0.97001 * 119.99891 * 5.61628 * 11 10 9 33 33 H 0.96998 * 120.00049 * 359.97438 * 16 14 12 34 34 H 1.08996 * 110.48845 * 334.67936 * 19 17 16 35 35 H 1.09007 * 110.48421 * 212.03678 * 19 17 16 36 36 H 1.09006 * 115.54536 * 154.35019 * 23 22 20 37 37 H 1.09002 * 117.49748 * 359.97438 * 24 23 22 38 38 H 1.08994 * 117.50368 * 145.01983 * 24 23 22 39 39 H 1.09004 * 117.50142 * 214.98108 * 25 23 22 40 40 H 1.09001 * 117.49907 * 359.97438 * 25 23 22 41 41 H 1.09008 * 110.23994 * 101.98919 * 26 22 20 42 42 H 1.08998 * 110.24793 * 223.98234 * 26 22 20 43 43 H 1.08996 * 117.49942 * 214.96744 * 27 9 7 44 44 H 1.08996 * 117.49972 * 359.97438 * 27 9 7 45 45 H 1.09003 * 117.49694 * 359.97438 * 28 9 7 46 46 H 1.08998 * 117.50196 * 144.97100 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4704 2.0616 -1.3996 5 1 1.4600 2.6450 0.7262 6 1 3.5596 1.4327 0.6737 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1292 0.0204 9 6 3.5113 -1.1942 -0.0267 10 6 4.1960 -1.1151 1.3393 11 7 3.3741 -1.8031 2.3381 12 6 3.7226 -1.7652 3.6394 13 8 4.6655 -1.0893 3.9957 14 6 2.9480 -2.5555 4.6438 15 8 1.9501 -3.1568 4.3040 16 7 3.3576 -2.6006 5.9270 17 6 2.5985 -3.3758 6.9115 18 1 1.5276 -3.2998 6.7232 19 6 3.0548 -4.8532 6.9233 20 6 4.1071 -4.9078 8.0087 21 8 4.9098 -5.8054 8.1535 22 7 4.0234 -3.8165 8.7891 23 6 4.8976 -3.5502 9.9341 24 6 6.0980 -4.4767 10.1371 25 6 4.8943 -4.5672 11.0771 26 6 2.9399 -2.9292 8.3503 27 6 4.1986 -2.0219 -1.1144 28 6 4.1968 -0.4945 -1.2020 29 1 -0.4850 0.8400 -0.0004 30 1 4.3165 -0.0702 1.6253 31 1 5.1746 -1.5918 1.2834 32 1 2.5791 -2.2857 2.0627 33 1 4.1553 -2.1203 6.1986 34 1 3.4855 -5.1272 5.9603 35 1 2.2191 -5.5086 7.1688 36 1 5.0225 -2.4994 10.1958 37 1 6.2373 -5.2847 9.4189 38 1 7.0131 -4.0356 10.5323 39 1 5.0174 -4.1857 12.0907 40 1 4.2414 -5.4344 10.9773 41 1 2.0709 -3.0464 8.9978 42 1 3.2766 -1.8925 8.3536 43 1 5.1385 -2.5101 -0.8570 44 1 3.5610 -2.5670 -1.8104 45 1 3.5578 -0.0343 -1.9558 46 1 5.1352 0.0226 -1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329042945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:29 Heat of formation + Delta-G solvation = -33.476381 kcal Electronic energy + Delta-G solvation = -28853.542850 eV Core-core repulsion = 24745.637471 eV Total energy + Delta-G solvation = -4107.905379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26765 -40.13194 -38.41130 -37.08586 -36.94459 -36.84029 -34.14859 -33.25501 -32.21980 -30.45175 -28.03830 -27.25331 -25.61163 -24.01520 -23.33447 -22.70376 -21.77868 -21.56332 -20.20943 -19.55879 -19.33503 -18.07741 -17.56477 -17.09029 -16.41951 -16.13474 -15.79566 -15.51429 -15.27305 -15.09758 -14.76986 -14.67480 -14.20690 -14.05532 -13.84544 -13.67003 -13.48297 -13.05777 -12.92591 -12.71247 -12.45449 -12.38354 -12.18780 -12.03732 -11.82130 -11.49579 -11.37515 -11.20014 -10.78775 -10.75318 -10.56140 -10.27505 -9.93151 -9.72260 -9.41597 -9.38321 -9.18912 -8.90674 -8.80376 -8.67405 -8.34163 -6.22740 -4.29413 1.68688 2.21291 2.42154 2.51504 3.23073 3.33559 3.36845 3.48326 3.49772 3.86659 3.92138 4.02040 4.33202 4.35315 4.47494 4.60485 4.68305 4.72698 4.77482 4.91740 4.99723 5.09785 5.10772 5.23356 5.35543 5.37285 5.53286 5.62968 5.65074 5.89421 5.91622 6.01241 6.09534 6.14533 6.30579 6.36850 6.40599 6.62868 6.70119 6.75042 6.91521 7.02953 7.09486 7.59763 7.73854 7.83148 8.08347 8.32887 8.49274 8.78269 9.39620 10.87679 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002478 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.952899 B =11298.852566 C =11518.734171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.082 0.918 9 C -0.018 4.018 10 C 0.147 3.853 11 N -0.656 5.656 12 C 0.495 3.505 13 O -0.546 6.546 14 C 0.513 3.487 15 O -0.505 6.505 16 N -0.704 5.704 17 C 0.134 3.866 18 H 0.125 0.875 19 C -0.168 4.168 20 C 0.521 3.479 21 O -0.524 6.524 22 N -0.595 5.595 23 C 0.079 3.921 24 C -0.190 4.190 25 C -0.191 4.191 26 C 0.099 3.901 27 C -0.177 4.177 28 C -0.194 4.194 29 H 0.267 0.733 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.424 0.576 33 H 0.413 0.587 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -5.107 18.970 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.120 4.120 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.180 1.180 7 C -0.535 4.535 8 H 0.100 0.900 9 C -0.019 4.019 10 C 0.024 3.976 11 N -0.308 5.308 12 C 0.274 3.726 13 O -0.425 6.425 14 C 0.294 3.706 15 O -0.378 6.378 16 N -0.359 5.359 17 C 0.029 3.971 18 H 0.142 0.858 19 C -0.209 4.209 20 C 0.309 3.691 21 O -0.401 6.401 22 N -0.328 5.328 23 C -0.024 4.024 24 C -0.227 4.227 25 C -0.229 4.229 26 C -0.024 4.024 27 C -0.214 4.214 28 C -0.232 4.232 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.250 0.750 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.231 -5.419 19.034 21.070 hybrid contribution 0.305 1.138 -0.003 1.178 sum 7.536 -4.282 19.031 20.912 Atomic orbital electron populations 1.69889 1.06383 1.27385 1.48692 1.24977 0.94550 0.99140 0.93303 0.86890 0.80766 0.83289 0.78483 1.20334 1.22063 1.18028 1.20159 0.85944 0.94679 1.52729 0.90017 1.19598 0.95506 1.00973 0.85858 1.21248 0.91584 0.96622 0.88184 1.45898 1.29374 1.50875 1.04657 1.19878 0.85061 0.83360 0.84265 1.90709 1.29726 1.42108 1.79987 1.20460 0.85178 0.81635 0.83333 1.90805 1.24732 1.42987 1.79242 1.45734 1.30783 1.51606 1.07802 1.21882 0.98656 0.89791 0.86794 0.85755 1.22871 0.99707 0.98127 1.00208 1.20957 0.84491 0.80911 0.82700 1.90618 1.39555 1.37088 1.72813 1.47664 1.33107 1.22604 1.29448 1.21544 0.96000 0.96746 0.88142 1.23755 0.92161 1.03430 1.03340 1.23352 1.02385 1.01854 0.95337 1.22418 0.90719 0.95294 0.93956 1.22927 1.00975 0.92929 1.04598 1.22962 1.01423 0.95121 1.03674 0.92358 0.91243 0.92835 0.73527 0.74993 0.87126 0.86352 0.85183 0.85088 0.88425 0.88187 0.88742 0.88826 0.88974 0.90761 0.89291 0.89133 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 20.82 25.16 -169.99 -4.28 16.54 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.26 -5.79 5.30 56.52 0.30 -5.49 16 7 C -0.50 -12.70 7.79 -34.44 -0.27 -12.97 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C -0.02 -0.39 1.24 -155.66 -0.19 -0.58 16 10 C 0.15 2.95 5.63 -4.04 -0.02 2.93 16 11 N -0.66 -12.87 5.28 -60.73 -0.32 -13.19 16 12 C 0.50 8.94 7.88 -11.59 -0.09 8.85 16 13 O -0.55 -10.47 16.46 5.49 0.09 -10.38 16 14 C 0.51 7.89 7.89 -11.59 -0.09 7.80 16 15 O -0.50 -8.84 16.23 5.49 0.09 -8.75 16 16 N -0.70 -7.91 5.15 -52.65 -0.27 -8.19 16 17 C 0.13 1.14 3.43 -66.30 -0.23 0.91 16 18 H 0.12 1.02 7.72 -51.93 -0.40 0.62 16 19 C -0.17 -1.57 6.58 -26.74 -0.18 -1.74 16 20 C 0.52 5.73 7.88 -10.86 -0.09 5.65 16 21 O -0.52 -7.54 14.69 5.55 0.08 -7.46 16 22 N -0.60 -5.02 3.27 -164.85 -0.54 -5.56 16 23 C 0.08 0.61 6.88 -67.94 -0.47 0.14 16 24 C -0.19 -1.67 9.77 -26.74 -0.26 -1.93 16 25 C -0.19 -1.44 10.34 -26.74 -0.28 -1.71 16 26 C 0.10 0.61 6.96 -3.13 -0.02 0.58 16 27 C -0.18 -3.33 9.88 -26.73 -0.26 -3.60 16 28 C -0.19 -3.85 7.60 -26.73 -0.20 -4.05 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.07 1.49 6.38 -51.93 -0.33 1.15 16 31 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 32 H 0.42 8.74 6.76 -40.82 -0.28 8.47 16 33 H 0.41 4.36 8.06 -40.82 -0.33 4.03 16 34 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.12 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.13 1.56 5.30 -51.93 -0.28 1.28 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.09 0.47 8.04 -51.93 -0.42 0.05 16 43 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 44 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 45 H 0.09 1.89 7.22 -51.93 -0.37 1.52 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -32.00 379.91 -8.09 -40.09 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.69 Total: 13.56 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.75 Total: 2.46 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.36 Total: -51.77 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.26 Total: -26.60 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.28 Total: 16.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.00 -8.09 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329042945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.612 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds