Wall clock time and date at job start Tue Mar 31 2020 18:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48487 * 109.47124 * 271.24244 * 3 2 1 5 5 H 1.48506 * 109.47041 * 31.24468 * 3 2 1 6 6 H 1.48507 * 109.46965 * 151.23931 * 3 2 1 7 7 C 1.37872 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99965 * 358.80678 * 7 2 1 9 9 C 1.50703 * 120.00099 * 178.80537 * 7 2 1 10 10 C 1.53005 * 115.54953 * 87.33578 * 9 7 2 11 11 N 1.46499 * 109.47117 * 32.55990 * 10 9 7 12 12 C 1.34773 * 120.00006 * 185.62499 * 11 10 9 13 13 O 1.21354 * 120.00046 * 4.87700 * 12 11 10 14 14 C 1.49450 * 120.00257 * 184.87355 * 12 11 10 15 15 O 1.21354 * 120.00099 * 354.86302 * 14 12 11 16 16 N 1.34773 * 120.00263 * 174.86693 * 14 12 11 17 17 C 1.46505 * 120.00108 * 180.02562 * 16 14 12 18 18 H 1.09000 * 110.85649 * 322.66097 * 17 16 14 19 19 C 1.54631 * 110.96645 * 86.45118 * 17 16 14 20 20 C 1.51280 * 104.19449 * 93.36040 * 19 17 16 21 21 O 1.21286 * 124.93941 * 196.27051 * 20 19 17 22 22 N 1.34415 * 110.11740 * 16.25139 * 20 19 17 23 23 C 1.46501 * 124.34723 * 180.14502 * 22 20 19 24 24 C 1.52994 * 117.50278 * 8.64420 * 23 22 20 25 25 C 1.52994 * 117.50010 * 300.01798 * 23 22 20 26 26 C 1.46765 * 111.29952 * 0.40276 * 22 20 19 27 27 C 1.52997 * 117.51872 * 233.03311 * 9 7 2 28 28 C 1.52996 * 117.50114 * 301.66430 * 9 7 2 29 29 H 0.97000 * 120.00051 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46829 * 272.56142 * 10 9 7 31 31 H 1.08995 * 109.46923 * 152.55587 * 10 9 7 32 32 H 0.97001 * 119.99891 * 5.61628 * 11 10 9 33 33 H 0.96998 * 120.00049 * 359.97438 * 16 14 12 34 34 H 1.08996 * 110.48845 * 334.67936 * 19 17 16 35 35 H 1.09007 * 110.48421 * 212.03678 * 19 17 16 36 36 H 1.09006 * 115.54536 * 154.35019 * 23 22 20 37 37 H 1.09002 * 117.49748 * 359.97438 * 24 23 22 38 38 H 1.08994 * 117.50368 * 145.01983 * 24 23 22 39 39 H 1.09004 * 117.50142 * 214.98108 * 25 23 22 40 40 H 1.09001 * 117.49907 * 359.97438 * 25 23 22 41 41 H 1.09008 * 110.23994 * 101.98919 * 26 22 20 42 42 H 1.08998 * 110.24793 * 223.98234 * 26 22 20 43 43 H 1.08996 * 117.49942 * 214.96744 * 27 9 7 44 44 H 1.08996 * 117.49972 * 359.97438 * 27 9 7 45 45 H 1.09003 * 117.49694 * 359.97438 * 28 9 7 46 46 H 1.08998 * 117.50196 * 144.97100 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4704 2.0616 -1.3996 5 1 1.4600 2.6450 0.7262 6 1 3.5596 1.4327 0.6737 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1292 0.0204 9 6 3.5113 -1.1942 -0.0267 10 6 4.1960 -1.1151 1.3393 11 7 3.3741 -1.8031 2.3381 12 6 3.7226 -1.7652 3.6394 13 8 4.6655 -1.0893 3.9957 14 6 2.9480 -2.5555 4.6438 15 8 1.9501 -3.1568 4.3040 16 7 3.3576 -2.6006 5.9270 17 6 2.5985 -3.3758 6.9115 18 1 1.5276 -3.2998 6.7232 19 6 3.0548 -4.8532 6.9233 20 6 4.1071 -4.9078 8.0087 21 8 4.9098 -5.8054 8.1535 22 7 4.0234 -3.8165 8.7891 23 6 4.8976 -3.5502 9.9341 24 6 6.0980 -4.4767 10.1371 25 6 4.8943 -4.5672 11.0771 26 6 2.9399 -2.9292 8.3503 27 6 4.1986 -2.0219 -1.1144 28 6 4.1968 -0.4945 -1.2020 29 1 -0.4850 0.8400 -0.0004 30 1 4.3165 -0.0702 1.6253 31 1 5.1746 -1.5918 1.2834 32 1 2.5791 -2.2857 2.0627 33 1 4.1553 -2.1203 6.1986 34 1 3.4855 -5.1272 5.9603 35 1 2.2191 -5.5086 7.1688 36 1 5.0225 -2.4994 10.1958 37 1 6.2373 -5.2847 9.4189 38 1 7.0131 -4.0356 10.5323 39 1 5.0174 -4.1857 12.0907 40 1 4.2414 -5.4344 10.9773 41 1 2.0709 -3.0464 8.9978 42 1 3.2766 -1.8925 8.3536 43 1 5.1385 -2.5101 -0.8570 44 1 3.5610 -2.5670 -1.8104 45 1 3.5578 -0.0343 -1.9558 46 1 5.1352 0.0226 -1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329042945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:28 Heat of formation + Delta-G solvation = -57.515812 kcal Electronic energy + Delta-G solvation = -28854.585278 eV Core-core repulsion = 24745.637471 eV Total energy + Delta-G solvation = -4108.947807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14613 -41.33460 -39.75011 -38.67258 -37.81506 -37.61958 -35.38265 -34.48296 -34.24643 -31.26184 -29.03242 -28.51997 -27.50217 -25.21297 -24.02910 -23.36478 -23.30651 -22.43432 -21.46257 -21.16524 -20.19864 -19.48638 -18.47687 -18.20388 -17.84844 -17.32489 -17.07034 -16.89266 -16.36905 -16.27641 -16.03166 -15.59802 -15.46619 -15.27226 -14.81407 -14.77614 -14.51919 -14.38426 -14.30854 -14.15336 -13.98223 -13.54443 -13.09968 -13.02183 -12.74951 -12.66930 -12.59899 -12.46802 -12.14512 -12.08880 -12.00040 -11.54938 -11.38232 -11.04359 -10.83388 -10.75875 -10.62071 -10.43115 -10.33591 -9.91796 -9.59079 -8.29466 -6.37709 0.36361 1.30504 1.35303 1.40196 1.40969 1.49514 1.80417 2.15102 2.36512 2.65514 2.87629 3.05891 3.18391 3.22269 3.31177 3.53443 3.64228 3.88897 3.98935 4.02088 4.08337 4.15120 4.33477 4.40138 4.47648 4.54101 4.58306 4.64566 4.71696 4.76594 4.78066 4.79013 4.89146 5.01913 5.05658 5.16267 5.18310 5.26786 5.38680 5.50532 5.63281 5.69624 5.94379 5.98817 6.28716 6.43754 6.72725 6.75079 6.99912 7.03829 7.33783 8.84639 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002478 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.952899 B =11298.852566 C =11518.734171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.032 3.968 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.303 1.303 6 H -0.235 1.235 7 C -0.484 4.484 8 H 0.044 0.956 9 C -0.045 4.045 10 C 0.154 3.846 11 N -0.668 5.668 12 C 0.493 3.507 13 O -0.556 6.556 14 C 0.518 3.482 15 O -0.531 6.531 16 N -0.684 5.684 17 C 0.132 3.868 18 H 0.134 0.866 19 C -0.165 4.165 20 C 0.511 3.489 21 O -0.567 6.567 22 N -0.591 5.591 23 C 0.080 3.920 24 C -0.209 4.209 25 C -0.181 4.181 26 C 0.105 3.895 27 C -0.158 4.158 28 C -0.189 4.189 29 H 0.265 0.735 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.417 0.583 33 H 0.419 0.581 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.163 0.837 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.624 -3.811 20.647 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.167 4.167 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.231 1.231 6 H -0.158 1.158 7 C -0.521 4.521 8 H 0.062 0.938 9 C -0.046 4.046 10 C 0.030 3.970 11 N -0.319 5.319 12 C 0.274 3.726 13 O -0.436 6.436 14 C 0.298 3.702 15 O -0.407 6.407 16 N -0.338 5.338 17 C 0.028 3.972 18 H 0.152 0.848 19 C -0.206 4.206 20 C 0.301 3.699 21 O -0.447 6.447 22 N -0.322 5.322 23 C -0.023 4.023 24 C -0.246 4.246 25 C -0.220 4.220 26 C -0.016 4.016 27 C -0.195 4.195 28 C -0.227 4.227 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.256 0.744 33 H 0.257 0.743 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.856 -4.103 20.751 22.932 hybrid contribution -0.172 0.617 -0.486 0.804 sum 8.684 -3.486 20.266 22.322 Atomic orbital electron populations 1.70026 1.08148 1.27965 1.51636 1.25704 0.95027 1.02424 0.93546 0.86070 0.80314 0.79303 0.78893 1.19417 1.23103 1.15850 1.20263 0.88403 0.92877 1.50571 0.93822 1.19522 0.93217 1.04337 0.87559 1.21162 0.92430 0.96284 0.87118 1.45945 1.29299 1.51187 1.05482 1.20316 0.84971 0.83133 0.84229 1.90691 1.30211 1.42562 1.80130 1.20008 0.84679 0.81342 0.84151 1.90804 1.25826 1.44282 1.79797 1.45713 1.30664 1.50705 1.06743 1.22140 0.98688 0.88871 0.87539 0.84830 1.22847 0.99826 0.99120 0.98771 1.21232 0.84267 0.81102 0.83346 1.90613 1.41234 1.38843 1.74052 1.47791 1.33394 1.21944 1.29115 1.21905 0.94724 0.98137 0.87543 1.23668 0.93675 1.03478 1.03775 1.23355 1.00916 1.01248 0.96454 1.22623 0.91163 0.95614 0.92243 1.22977 1.01578 0.92635 1.02286 1.23017 1.01922 0.96021 1.01717 0.92604 0.92437 0.90560 0.74377 0.74313 0.89148 0.84488 0.81971 0.88529 0.86791 0.85689 0.90556 0.85632 0.86882 0.87535 0.90037 0.90501 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 13.96 21.45 0.30 -55.72 16 2 C 0.03 1.76 5.47 84.65 0.46 2.22 16 3 Si 0.93 42.64 25.16 68.60 1.73 44.36 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.24 -9.92 5.30 99.48 0.53 -9.40 16 7 C -0.48 -25.08 7.79 25.60 0.20 -24.88 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 9 C -0.05 -1.88 1.24 -52.93 -0.07 -1.94 16 10 C 0.15 5.89 5.63 86.38 0.49 6.38 16 11 N -0.67 -25.95 5.28 -464.41 -2.45 -28.40 16 12 C 0.49 17.40 7.88 87.27 0.69 18.09 16 13 O -0.56 -20.47 16.46 -3.26 -0.05 -20.52 16 14 C 0.52 15.57 7.89 87.27 0.69 16.25 16 15 O -0.53 -18.62 16.23 -3.26 -0.05 -18.67 16 16 N -0.68 -14.23 5.15 -438.86 -2.26 -16.49 16 17 C 0.13 1.96 3.43 46.05 0.16 2.11 16 18 H 0.13 1.87 7.72 -2.39 -0.02 1.85 16 19 C -0.16 -2.93 6.58 30.59 0.20 -2.73 16 20 C 0.51 10.98 7.88 87.90 0.69 11.68 16 21 O -0.57 -16.90 14.69 -3.05 -0.04 -16.95 16 22 N -0.59 -8.63 3.27 -794.06 -2.60 -11.23 16 23 C 0.08 1.01 6.88 44.99 0.31 1.32 16 24 C -0.21 -3.51 9.77 30.59 0.30 -3.21 16 25 C -0.18 -2.40 10.34 30.59 0.32 -2.09 16 26 C 0.11 0.90 6.96 86.83 0.60 1.51 16 27 C -0.16 -5.55 9.88 30.59 0.30 -5.24 16 28 C -0.19 -6.99 7.60 30.59 0.23 -6.76 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.06 2.33 6.38 -2.39 -0.02 2.32 16 31 H 0.08 2.56 7.89 -2.39 -0.02 2.55 16 32 H 0.42 17.55 6.76 -92.71 -0.63 16.93 16 33 H 0.42 7.91 8.06 -92.71 -0.75 7.17 16 34 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 35 H 0.14 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.16 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.10 2.40 5.30 -2.39 -0.01 2.39 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.11 0.61 8.04 -2.39 -0.02 0.59 16 43 H 0.11 3.09 8.04 -2.39 -0.02 3.07 16 44 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.08 3.06 7.22 -2.39 -0.02 3.04 16 46 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -72.79 379.91 -0.38 -73.17 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.52 Total: 37.72 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.57 Total: 12.71 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -7.01 Total: -111.83 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.15 Total: -56.14 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.73 Total: 44.36 kcal Total: -72.79 -0.38 -73.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329042945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.656 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds