Wall clock time and date at job start Tue Mar 31 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47275 * 270.00330 * 3 2 1 5 5 H 1.48499 * 109.47085 * 30.00083 * 3 2 1 6 6 H 1.48503 * 109.47247 * 149.99864 * 3 2 1 7 7 C 1.37877 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00086 * 181.97315 * 7 2 1 9 9 C 1.50702 * 119.99862 * 1.96529 * 7 2 1 10 10 C 1.52998 * 115.54549 * 84.65742 * 9 7 2 11 11 N 1.46501 * 109.47469 * 57.83566 * 10 9 7 12 12 C 1.34779 * 120.00101 * 185.18938 * 11 10 9 13 13 O 1.21343 * 120.00029 * 5.59755 * 12 11 10 14 14 C 1.49455 * 119.99845 * 185.59330 * 12 11 10 15 15 O 1.21348 * 119.99787 * 354.49246 * 14 12 11 16 16 N 1.34776 * 119.99520 * 174.49588 * 14 12 11 17 17 C 1.46504 * 119.99434 * 180.02562 * 16 14 12 18 18 H 1.08992 * 110.88827 * 37.35005 * 17 16 14 19 19 C 1.54624 * 110.96491 * 273.53974 * 17 16 14 20 20 C 1.51281 * 104.31726 * 266.74526 * 19 17 16 21 21 O 1.21277 * 124.94847 * 163.71854 * 20 19 17 22 22 N 1.34419 * 110.11290 * 343.68609 * 20 19 17 23 23 C 1.46505 * 124.34998 * 179.56931 * 22 20 19 24 24 C 1.52998 * 117.50067 * 8.64430 * 23 22 20 25 25 C 1.52998 * 60.00133 * 252.51110 * 24 23 22 26 26 C 1.46765 * 111.30196 * 359.58947 * 22 20 19 27 27 C 1.53001 * 117.49934 * 230.32400 * 9 7 2 28 28 C 1.52994 * 117.50115 * 298.98414 * 9 7 2 29 29 H 0.96999 * 119.99840 * 5.01807 * 1 2 3 30 30 H 1.08997 * 109.47543 * 297.83355 * 10 9 7 31 31 H 1.09003 * 109.46956 * 177.83520 * 10 9 7 32 32 H 0.96999 * 119.99741 * 5.19803 * 11 10 9 33 33 H 0.96991 * 120.00398 * 359.97438 * 16 14 12 34 34 H 1.09004 * 110.48573 * 148.00439 * 19 17 16 35 35 H 1.08994 * 110.49179 * 25.49700 * 19 17 16 36 36 H 1.08999 * 115.54744 * 154.35691 * 23 22 20 37 37 H 1.09003 * 117.49183 * 0.02562 * 24 23 22 38 38 H 1.09001 * 117.50017 * 145.01960 * 24 23 22 39 39 H 1.08993 * 117.49991 * 252.50885 * 25 24 23 40 40 H 1.09001 * 117.49779 * 107.48545 * 25 24 23 41 41 H 1.09002 * 110.24333 * 136.01597 * 26 22 20 42 42 H 1.09000 * 110.24617 * 257.93164 * 26 22 20 43 43 H 1.09000 * 117.49498 * 215.00435 * 27 9 7 44 44 H 1.09001 * 117.50054 * 0.02592 * 27 9 7 45 45 H 1.09005 * 117.49903 * 359.97438 * 28 9 7 46 46 H 1.09005 * 117.49696 * 144.99181 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2517 -2.4987 -0.0459 10 6 0.8517 -2.9815 -1.4415 11 7 2.0503 -3.1212 -2.2722 12 6 1.9327 -3.4352 -3.5776 13 8 0.8343 -3.5023 -4.0889 14 6 3.1552 -3.7005 -4.3954 15 8 4.2560 -3.5363 -3.9119 16 7 3.0348 -4.1221 -5.6699 17 6 4.2331 -4.3828 -6.4713 18 1 5.0187 -4.8292 -5.8619 19 6 4.7321 -3.0898 -7.1570 20 6 4.0749 -3.1113 -8.5194 21 8 3.9783 -2.1553 -9.2593 22 7 3.6142 -4.3446 -8.7910 23 6 2.9151 -4.7128 -10.0247 24 6 2.8758 -3.6773 -11.1504 25 6 1.6111 -3.9788 -10.3438 26 6 3.9010 -5.2747 -7.6926 27 6 1.6179 -3.5621 0.9915 28 6 0.2942 -2.8024 1.1081 29 1 -0.4850 0.8368 -0.0735 30 1 0.1765 -2.2571 -1.8969 31 1 0.3500 -3.9460 -1.3624 32 1 2.9286 -2.9880 -1.8826 33 1 2.1549 -4.2537 -6.0562 34 1 5.8175 -3.1054 -7.2568 35 1 4.4144 -2.2123 -6.5940 36 1 2.9840 -5.7629 -10.3085 37 1 3.3705 -2.7223 -10.9731 38 1 2.9190 -4.0461 -12.1752 39 1 0.8223 -4.5459 -10.8379 40 1 1.2734 -3.2219 -9.6358 41 1 3.0269 -5.8911 -7.4823 42 1 4.7542 -5.9045 -7.9446 43 1 1.5738 -4.6056 0.6796 44 1 2.4031 -3.3179 1.7070 45 1 0.2091 -2.0586 1.9004 46 1 -0.6209 -3.3460 0.8730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329042946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:32 Heat of formation + Delta-G solvation = -38.702382 kcal Electronic energy + Delta-G solvation = -28780.729985 eV Core-core repulsion = 24672.597990 eV Total energy + Delta-G solvation = -4108.131995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26471 -40.12945 -38.34594 -36.92719 -36.83975 -36.75786 -34.12919 -33.20784 -31.99950 -30.45771 -28.02475 -27.04560 -25.49012 -23.96199 -23.33500 -22.67792 -21.63217 -21.18380 -20.17629 -19.61162 -19.37621 -18.16716 -17.42292 -17.18953 -16.23082 -16.10255 -15.89862 -15.60473 -14.93728 -14.83659 -14.76442 -14.57415 -14.22840 -14.04475 -13.89602 -13.69298 -13.51035 -13.07055 -12.85220 -12.70610 -12.20249 -12.05738 -11.95129 -11.78097 -11.64095 -11.46520 -11.36736 -11.00470 -10.94215 -10.76315 -10.54529 -10.28714 -9.95569 -9.67606 -9.40807 -9.31923 -9.10805 -8.89641 -8.56344 -8.45859 -8.16002 -6.11379 -4.20674 1.66504 2.21918 2.42753 2.50798 3.27047 3.34580 3.36636 3.46965 3.52621 3.83209 3.90666 4.03126 4.34697 4.35379 4.48179 4.61851 4.65353 4.79662 4.84436 4.94259 5.10748 5.17762 5.22977 5.29193 5.33640 5.41957 5.53994 5.69060 5.92920 5.95835 6.05629 6.23420 6.31572 6.36290 6.41571 6.63462 6.70735 6.71554 6.91908 7.04970 7.08322 7.30611 7.45193 7.71988 7.78923 7.84493 8.06558 8.28008 8.48308 8.81534 9.47678 10.96622 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002592 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.608158 B =10801.728803 C =11367.927554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.662 5.662 12 C 0.495 3.505 13 O -0.538 6.538 14 C 0.514 3.486 15 O -0.513 6.513 16 N -0.703 5.703 17 C 0.135 3.865 18 H 0.124 0.876 19 C -0.169 4.169 20 C 0.521 3.479 21 O -0.522 6.522 22 N -0.596 5.596 23 C 0.078 3.922 24 C -0.190 4.190 25 C -0.190 4.190 26 C 0.099 3.901 27 C -0.211 4.211 28 C -0.142 4.142 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.414 0.586 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -13.732 -16.878 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.021 3.979 10 C 0.036 3.964 11 N -0.311 5.311 12 C 0.274 3.726 13 O -0.417 6.417 14 C 0.295 3.705 15 O -0.387 6.387 16 N -0.358 5.358 17 C 0.029 3.971 18 H 0.142 0.858 19 C -0.211 4.211 20 C 0.309 3.691 21 O -0.399 6.399 22 N -0.329 5.329 23 C -0.025 4.025 24 C -0.227 4.227 25 C -0.228 4.228 26 C -0.024 4.024 27 C -0.248 4.248 28 C -0.180 4.180 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.250 0.750 33 H 0.251 0.749 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.703 -13.057 -17.202 22.612 hybrid contribution 0.263 0.911 -0.041 0.949 sum 6.966 -12.145 -17.243 22.212 Atomic orbital electron populations 1.69981 1.05854 1.27041 1.48202 1.24976 0.94837 0.99014 0.94153 0.86632 0.79957 0.83454 0.78291 1.20550 1.21190 1.19715 1.20367 0.92438 0.88456 1.52548 0.92015 1.19022 0.99544 0.93716 0.85588 1.21182 0.85056 0.98630 0.91493 1.45826 1.12896 1.64739 1.07680 1.19831 0.88584 0.80385 0.83828 1.90729 1.27133 1.52557 1.71272 1.20571 0.90259 0.77304 0.82350 1.90764 1.27382 1.49212 1.71304 1.45755 1.10037 1.67884 1.12126 1.21935 0.88997 0.94749 0.91394 0.85826 1.22873 1.02985 1.00907 0.94291 1.20942 0.77712 0.81957 0.88454 1.90622 1.58037 1.37548 1.53650 1.47659 1.57064 1.10598 1.17592 1.21532 0.97755 0.97425 0.85816 1.23758 1.01372 1.02425 0.95180 1.23378 0.91692 1.03848 1.03926 1.22462 1.03009 0.92132 0.84780 1.23065 1.00164 0.95526 1.06023 1.22480 0.91131 1.01311 1.03050 0.92831 0.90343 0.93864 0.74969 0.74895 0.86359 0.87095 0.85234 0.85113 0.88514 0.88078 0.88509 0.89021 0.88881 0.91594 0.90201 0.89463 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.00 12.72 55.43 0.71 -23.30 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.80 8.38 -34.44 -0.29 -13.09 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.02 0.50 1.51 -155.66 -0.23 0.27 16 10 C 0.16 3.43 5.57 -4.04 -0.02 3.40 16 11 N -0.66 -12.79 5.37 -60.73 -0.33 -13.12 16 12 C 0.49 8.88 7.88 -11.58 -0.09 8.79 16 13 O -0.54 -10.67 16.46 5.50 0.09 -10.58 16 14 C 0.51 7.59 7.88 -11.58 -0.09 7.50 16 15 O -0.51 -8.35 16.23 5.50 0.09 -8.26 16 16 N -0.70 -7.68 5.16 -52.47 -0.27 -7.95 16 17 C 0.13 1.08 3.45 -66.11 -0.23 0.85 16 18 H 0.12 0.89 7.73 -51.93 -0.40 0.49 16 19 C -0.17 -1.60 6.57 -26.74 -0.18 -1.78 16 20 C 0.52 5.89 7.88 -10.86 -0.09 5.80 16 21 O -0.52 -7.79 14.68 5.56 0.08 -7.71 16 22 N -0.60 -5.03 3.27 -164.62 -0.54 -5.57 16 23 C 0.08 0.60 6.88 -67.93 -0.47 0.13 16 24 C -0.19 -1.70 9.77 -26.73 -0.26 -1.96 16 25 C -0.19 -1.63 10.34 -26.73 -0.28 -1.90 16 26 C 0.10 0.56 6.97 -2.93 -0.02 0.54 16 27 C -0.21 -4.25 9.94 -26.69 -0.27 -4.52 16 28 C -0.14 -3.14 9.26 -26.70 -0.25 -3.38 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.08 1.93 8.09 -51.93 -0.42 1.51 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.41 7.87 7.73 -40.82 -0.32 7.56 16 33 H 0.41 4.37 8.06 -40.82 -0.33 4.04 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.13 1.57 5.29 -51.93 -0.27 1.30 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.42 8.04 -51.93 -0.42 0.01 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 46 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -31.51 391.16 -8.92 -40.43 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.77 Total: 11.87 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.85 Total: 2.53 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.43 Total: -49.93 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.26 Total: -26.55 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.51 -8.92 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329042946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.729 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds