Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47275 * 270.00330 * 3 2 1 5 5 H 1.48499 * 109.47085 * 30.00083 * 3 2 1 6 6 H 1.48503 * 109.47247 * 149.99864 * 3 2 1 7 7 C 1.37877 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00086 * 181.97315 * 7 2 1 9 9 C 1.50702 * 119.99862 * 1.96529 * 7 2 1 10 10 C 1.52998 * 115.54549 * 84.65742 * 9 7 2 11 11 N 1.46501 * 109.47469 * 57.83566 * 10 9 7 12 12 C 1.34779 * 120.00101 * 185.18938 * 11 10 9 13 13 O 1.21343 * 120.00029 * 5.59755 * 12 11 10 14 14 C 1.49455 * 119.99845 * 185.59330 * 12 11 10 15 15 O 1.21348 * 119.99787 * 354.49246 * 14 12 11 16 16 N 1.34776 * 119.99520 * 174.49588 * 14 12 11 17 17 C 1.46504 * 119.99434 * 180.02562 * 16 14 12 18 18 H 1.08992 * 110.88827 * 37.35005 * 17 16 14 19 19 C 1.54624 * 110.96491 * 273.53974 * 17 16 14 20 20 C 1.51281 * 104.31726 * 266.74526 * 19 17 16 21 21 O 1.21277 * 124.94847 * 163.71854 * 20 19 17 22 22 N 1.34419 * 110.11290 * 343.68609 * 20 19 17 23 23 C 1.46505 * 124.34998 * 179.56931 * 22 20 19 24 24 C 1.52998 * 117.50067 * 8.64430 * 23 22 20 25 25 C 1.52998 * 60.00133 * 252.51110 * 24 23 22 26 26 C 1.46765 * 111.30196 * 359.58947 * 22 20 19 27 27 C 1.53001 * 117.49934 * 230.32400 * 9 7 2 28 28 C 1.52994 * 117.50115 * 298.98414 * 9 7 2 29 29 H 0.96999 * 119.99840 * 5.01807 * 1 2 3 30 30 H 1.08997 * 109.47543 * 297.83355 * 10 9 7 31 31 H 1.09003 * 109.46956 * 177.83520 * 10 9 7 32 32 H 0.96999 * 119.99741 * 5.19803 * 11 10 9 33 33 H 0.96991 * 120.00398 * 359.97438 * 16 14 12 34 34 H 1.09004 * 110.48573 * 148.00439 * 19 17 16 35 35 H 1.08994 * 110.49179 * 25.49700 * 19 17 16 36 36 H 1.08999 * 115.54744 * 154.35691 * 23 22 20 37 37 H 1.09003 * 117.49183 * 0.02562 * 24 23 22 38 38 H 1.09001 * 117.50017 * 145.01960 * 24 23 22 39 39 H 1.08993 * 117.49991 * 252.50885 * 25 24 23 40 40 H 1.09001 * 117.49779 * 107.48545 * 25 24 23 41 41 H 1.09002 * 110.24333 * 136.01597 * 26 22 20 42 42 H 1.09000 * 110.24617 * 257.93164 * 26 22 20 43 43 H 1.09000 * 117.49498 * 215.00435 * 27 9 7 44 44 H 1.09001 * 117.50054 * 0.02592 * 27 9 7 45 45 H 1.09005 * 117.49903 * 359.97438 * 28 9 7 46 46 H 1.09005 * 117.49696 * 144.99181 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2517 -2.4987 -0.0459 10 6 0.8517 -2.9815 -1.4415 11 7 2.0503 -3.1212 -2.2722 12 6 1.9327 -3.4352 -3.5776 13 8 0.8343 -3.5023 -4.0889 14 6 3.1552 -3.7005 -4.3954 15 8 4.2560 -3.5363 -3.9119 16 7 3.0348 -4.1221 -5.6699 17 6 4.2331 -4.3828 -6.4713 18 1 5.0187 -4.8292 -5.8619 19 6 4.7321 -3.0898 -7.1570 20 6 4.0749 -3.1113 -8.5194 21 8 3.9783 -2.1553 -9.2593 22 7 3.6142 -4.3446 -8.7910 23 6 2.9151 -4.7128 -10.0247 24 6 2.8758 -3.6773 -11.1504 25 6 1.6111 -3.9788 -10.3438 26 6 3.9010 -5.2747 -7.6926 27 6 1.6179 -3.5621 0.9915 28 6 0.2942 -2.8024 1.1081 29 1 -0.4850 0.8368 -0.0735 30 1 0.1765 -2.2571 -1.8969 31 1 0.3500 -3.9460 -1.3624 32 1 2.9286 -2.9880 -1.8826 33 1 2.1549 -4.2537 -6.0562 34 1 5.8175 -3.1054 -7.2568 35 1 4.4144 -2.2123 -6.5940 36 1 2.9840 -5.7629 -10.3085 37 1 3.3705 -2.7223 -10.9731 38 1 2.9190 -4.0461 -12.1752 39 1 0.8223 -4.5459 -10.8379 40 1 1.2734 -3.2219 -9.6358 41 1 3.0269 -5.8911 -7.4823 42 1 4.7542 -5.9045 -7.9446 43 1 1.5738 -4.6056 0.6796 44 1 2.4031 -3.3179 1.7070 45 1 0.2091 -2.0586 1.9004 46 1 -0.6209 -3.3460 0.8730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329042946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = -61.090392 kcal Electronic energy + Delta-G solvation = -28781.700802 eV Core-core repulsion = 24672.597990 eV Total energy + Delta-G solvation = -4109.102812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13430 -41.32244 -39.68544 -38.46098 -37.81072 -37.61271 -35.36227 -34.48919 -33.97688 -31.25863 -28.94174 -28.42684 -27.40333 -25.18274 -24.04104 -23.37239 -22.93798 -22.41836 -21.46085 -21.27774 -20.21434 -19.57997 -18.33234 -18.00274 -17.88679 -17.32083 -16.99226 -16.68793 -16.62722 -16.24704 -15.85731 -15.66106 -15.45051 -15.26796 -14.77713 -14.75331 -14.44847 -14.33521 -14.31139 -13.75748 -13.54084 -13.45971 -13.04833 -12.93984 -12.86354 -12.74055 -12.64909 -12.49947 -12.38497 -12.05394 -12.00213 -11.43694 -11.39339 -10.98865 -10.84764 -10.75178 -10.43159 -10.32891 -10.17892 -9.88503 -9.58826 -8.13019 -6.25312 0.36532 1.30458 1.39106 1.40475 1.42647 1.49574 1.82136 2.15676 2.40289 2.66587 2.86077 3.16205 3.19725 3.33560 3.42527 3.59557 3.65864 3.88855 3.97931 4.05775 4.15468 4.22225 4.52077 4.52164 4.53506 4.62634 4.64673 4.68104 4.74117 4.76439 4.78978 4.94462 5.01115 5.04117 5.16308 5.25559 5.29864 5.37366 5.55370 5.63711 5.68673 5.75850 5.93915 5.99803 6.34735 6.43366 6.74875 6.82315 7.01662 7.04049 7.44688 8.94389 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002592 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.608158 B =10801.728803 C =11367.927554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.941 3.059 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.059 0.941 9 C -0.004 4.004 10 C 0.174 3.826 11 N -0.666 5.666 12 C 0.491 3.509 13 O -0.560 6.560 14 C 0.523 3.477 15 O -0.528 6.528 16 N -0.686 5.686 17 C 0.134 3.866 18 H 0.144 0.856 19 C -0.167 4.167 20 C 0.509 3.491 21 O -0.570 6.570 22 N -0.592 5.592 23 C 0.087 3.913 24 C -0.203 4.203 25 C -0.195 4.195 26 C 0.105 3.895 27 C -0.178 4.178 28 C -0.150 4.150 29 H 0.259 0.741 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.416 0.584 33 H 0.417 0.583 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 -16.738 -17.738 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.077 0.923 9 C -0.004 4.004 10 C 0.050 3.950 11 N -0.316 5.316 12 C 0.272 3.728 13 O -0.440 6.440 14 C 0.303 3.697 15 O -0.404 6.404 16 N -0.340 5.340 17 C 0.030 3.970 18 H 0.161 0.839 19 C -0.208 4.208 20 C 0.298 3.702 21 O -0.450 6.450 22 N -0.324 5.324 23 C -0.016 4.016 24 C -0.240 4.240 25 C -0.234 4.234 26 C -0.017 4.017 27 C -0.215 4.215 28 C -0.188 4.188 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.253 0.747 33 H 0.255 0.745 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.188 0.812 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.212 -16.113 -18.075 25.569 hybrid contribution -0.210 1.825 0.175 1.845 sum 8.003 -14.288 -17.901 24.262 Atomic orbital electron populations 1.70083 1.06923 1.27294 1.49822 1.25612 0.95477 1.01726 0.94465 0.85809 0.79172 0.80406 0.77825 1.21040 1.21281 1.18865 1.20667 0.92530 0.89784 1.51207 0.92282 1.19070 1.00588 0.94108 0.86671 1.20807 0.85331 0.98077 0.90763 1.45747 1.12167 1.65365 1.08286 1.20436 0.89610 0.79225 0.83526 1.90713 1.28459 1.53204 1.71583 1.19879 0.88533 0.77973 0.83274 1.90764 1.27204 1.50491 1.71910 1.45765 1.11479 1.65935 1.10804 1.22259 0.88052 0.94551 0.92142 0.83883 1.22870 1.04297 1.00581 0.93100 1.21306 0.77800 0.82366 0.88750 1.90613 1.60016 1.39342 1.55072 1.47817 1.55856 1.10212 1.18490 1.21924 0.96137 0.98788 0.84734 1.23670 1.01647 1.01758 0.96952 1.23357 0.92582 1.03777 1.03672 1.22738 1.05558 0.91152 0.82245 1.23061 0.98466 0.96203 1.03787 1.22404 0.92646 1.01639 1.02146 0.93222 0.94286 0.92360 0.74743 0.74543 0.84096 0.89797 0.81189 0.88603 0.86303 0.85769 0.91661 0.87024 0.84900 0.88682 0.89958 0.91886 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.78 12.72 21.45 0.27 -50.50 16 2 C 0.03 1.50 5.43 84.65 0.46 1.96 16 3 Si 0.94 43.18 29.54 68.60 2.03 45.20 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.50 -25.88 8.38 25.60 0.21 -25.66 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.00 -0.17 1.51 -52.93 -0.08 -0.25 16 10 C 0.17 7.51 5.57 86.38 0.48 7.99 16 11 N -0.67 -25.56 5.37 -464.41 -2.49 -28.06 16 12 C 0.49 17.47 7.88 87.27 0.69 18.15 16 13 O -0.56 -22.19 16.46 -3.22 -0.05 -22.24 16 14 C 0.52 14.80 7.88 87.27 0.69 15.49 16 15 O -0.53 -16.41 16.23 -3.24 -0.05 -16.47 16 16 N -0.69 -13.68 5.16 -438.29 -2.26 -15.94 16 17 C 0.13 1.75 3.45 46.17 0.16 1.91 16 18 H 0.14 1.48 7.73 -2.39 -0.02 1.46 16 19 C -0.17 -2.97 6.57 30.59 0.20 -2.77 16 20 C 0.51 11.26 7.88 87.90 0.69 11.95 16 21 O -0.57 -17.84 14.68 -3.02 -0.04 -17.88 16 22 N -0.59 -8.55 3.27 -793.33 -2.60 -11.15 16 23 C 0.09 1.11 6.88 44.99 0.31 1.42 16 24 C -0.20 -3.49 9.77 30.59 0.30 -3.19 16 25 C -0.20 -3.16 10.34 30.59 0.32 -2.84 16 26 C 0.10 0.73 6.97 86.95 0.61 1.33 16 27 C -0.18 -6.85 9.94 30.62 0.30 -6.55 16 28 C -0.15 -6.61 9.26 30.62 0.28 -6.32 16 29 H 0.26 14.11 8.32 -92.71 -0.77 13.33 16 30 H 0.04 1.98 8.09 -2.39 -0.02 1.96 16 31 H 0.06 2.31 8.11 -2.39 -0.02 2.29 16 32 H 0.42 15.61 7.73 -92.71 -0.72 14.89 16 33 H 0.42 8.05 8.06 -92.71 -0.75 7.30 16 34 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 36 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 2.44 5.29 -2.39 -0.01 2.42 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 0.46 8.04 -2.39 -0.02 0.44 16 42 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.06 3.05 8.14 -2.38 -0.02 3.04 16 46 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -71.85 391.16 -0.01 -71.87 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.44 Total: 32.53 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.62 Total: 12.63 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -7.07 Total: -105.65 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.15 Total: -56.59 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.85 -0.01 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329042946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.777 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds