Wall clock time and date at job start Tue Mar 31 2020 18:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48508 * 109.46785 * 269.99216 * 3 2 1 5 5 H 1.48500 * 109.47551 * 29.99410 * 3 2 1 6 6 H 1.48504 * 109.47290 * 150.00003 * 3 2 1 7 7 C 1.37874 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99739 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00002 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99678 * 179.97438 * 13 12 11 16 16 C 1.46508 * 119.99849 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.43514 * 32.45547 * 16 15 13 18 18 C 1.54984 * 110.45235 * 269.82671 * 16 15 13 19 19 C 1.54997 * 102.01247 * 261.96969 * 18 16 15 20 20 O 1.44376 * 103.62951 * 323.17795 * 19 18 16 21 21 C 1.43743 * 106.97973 * 39.97901 * 20 19 18 22 22 H 1.09003 * 109.87663 * 93.05750 * 21 20 19 23 23 C 1.50695 * 109.88171 * 214.06303 * 21 20 19 24 24 C 1.38825 * 120.35260 * 218.26737 * 23 21 20 25 25 C 1.38389 * 118.48387 * 179.80334 * 24 23 21 26 26 C 1.38922 * 119.11075 * 0.44985 * 25 24 23 27 27 O 1.35665 * 119.68646 * 179.76820 * 26 25 24 28 28 N 1.32249 * 120.62782 * 359.79437 * 26 25 24 29 29 C 1.31961 * 121.64866 * 359.97172 * 28 26 25 30 30 H 0.97002 * 120.00027 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47421 * 59.99177 * 9 7 2 32 32 H 1.09007 * 109.46607 * 299.98962 * 9 7 2 33 33 H 1.09005 * 109.47185 * 59.99269 * 10 9 7 34 34 H 1.09000 * 109.47334 * 299.99722 * 10 9 7 35 35 H 1.08996 * 109.47067 * 59.99812 * 11 10 9 36 36 H 1.09000 * 109.46673 * 299.99927 * 11 10 9 37 37 H 0.97003 * 119.99937 * 0.02562 * 12 11 10 38 38 H 0.97000 * 120.00563 * 359.97438 * 15 13 12 39 39 H 1.09003 * 110.84226 * 143.84310 * 18 16 15 40 40 H 1.09002 * 111.05170 * 20.18947 * 18 16 15 41 41 H 1.09002 * 110.61957 * 204.59612 * 19 18 16 42 42 H 1.09000 * 110.61969 * 81.75502 * 19 18 16 43 43 H 1.08000 * 120.76523 * 0.02562 * 24 23 21 44 44 H 1.08003 * 120.44555 * 180.19695 * 25 24 23 45 45 H 0.96707 * 114.00394 * 270.02389 * 27 26 25 46 46 H 1.08007 * 119.58068 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7876 -7.5934 0.0024 15 7 2.8589 -8.3956 0.0004 16 6 2.3705 -9.7769 0.0009 17 1 1.4304 -9.8484 -0.5462 18 6 2.1958 -10.2891 1.4531 19 6 3.5083 -11.0831 1.6753 20 8 3.7563 -11.6964 0.3920 21 6 3.4235 -10.7215 -0.6105 22 1 4.3137 -10.1573 -0.8888 23 6 2.8524 -11.4086 -1.8240 24 6 3.1657 -10.9565 -3.0986 25 6 2.6231 -11.6189 -4.1858 26 6 1.7807 -12.7014 -3.9661 27 8 1.2385 -13.3563 -5.0233 28 7 1.5018 -13.0994 -2.7361 29 6 2.0076 -12.4909 -1.6800 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8905 33 1 2.8720 -3.6043 0.8905 34 1 2.8719 -3.6044 -0.8895 35 1 0.8533 -5.0451 -0.8885 36 1 0.8540 -5.0445 0.8914 37 1 3.3860 -5.9233 0.0002 38 1 3.8125 -8.2184 -0.0014 39 1 1.3274 -10.9432 1.5319 40 1 2.1202 -9.4584 2.1548 41 1 3.3715 -11.8435 2.4442 42 1 4.3232 -10.4105 1.9431 43 1 3.8209 -10.1095 -3.2388 44 1 2.8482 -11.2959 -5.1915 45 1 0.3863 -13.0012 -5.3111 46 1 1.7571 -12.8437 -0.6905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329976848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:17 Heat of formation + Delta-G solvation = -86.474026 kcal Electronic energy + Delta-G solvation = -27879.171427 eV Core-core repulsion = 23768.967897 eV Total energy + Delta-G solvation = -4110.203529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27804 -40.28797 -39.24027 -37.39283 -35.65173 -34.65583 -33.38441 -33.24482 -31.70272 -31.57316 -30.56746 -27.98193 -26.53175 -24.44284 -23.85014 -23.20601 -22.49581 -21.47509 -20.86576 -20.40363 -19.22588 -18.31398 -17.61610 -17.24220 -16.94199 -16.34061 -16.22607 -15.57949 -15.45209 -15.19741 -14.99506 -14.58135 -14.51276 -14.22009 -14.08175 -13.98978 -13.68389 -13.58550 -12.90922 -12.55563 -12.37634 -12.31586 -12.08084 -11.85436 -11.81356 -11.64382 -11.51964 -10.93717 -10.77655 -10.62851 -10.45282 -10.27770 -10.21983 -9.90975 -9.76435 -9.51474 -9.49105 -9.16586 -9.11696 -8.72025 -8.40571 -6.05095 -4.08391 0.50386 0.80487 2.56639 3.00107 3.19897 3.28027 3.29371 3.34659 3.37116 3.53310 4.00947 4.09032 4.24530 4.29407 4.40806 4.41802 4.51697 4.57684 4.59583 4.78841 4.89854 4.93017 5.23754 5.30424 5.30703 5.38874 5.49436 5.54120 5.62072 5.65648 5.74874 5.75156 6.05042 6.10469 6.15232 6.39865 6.44085 6.56283 6.69598 6.93885 6.96805 7.06789 7.51423 7.59854 7.72240 7.93444 8.00812 8.34104 8.61662 8.98262 9.55926 11.06134 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.001908 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.633891 B =14668.878175 C =15687.138952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.701 3.299 14 O -0.588 6.588 15 N -0.744 5.744 16 C 0.140 3.860 17 H 0.108 0.892 18 C -0.167 4.167 19 C 0.044 3.956 20 O -0.362 6.362 21 C 0.121 3.879 22 H 0.087 0.913 23 C -0.151 4.151 24 C -0.044 4.044 25 C -0.185 4.185 26 C 0.312 3.688 27 O -0.484 6.484 28 N -0.503 5.503 29 C 0.152 3.848 30 H 0.261 0.739 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.403 0.597 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -26.078 -2.767 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.401 3.599 14 O -0.466 6.466 15 N -0.401 5.401 16 C 0.034 3.966 17 H 0.126 0.874 18 C -0.206 4.206 19 C -0.032 4.032 20 O -0.281 6.281 21 C 0.062 3.938 22 H 0.105 0.895 23 C -0.153 4.153 24 C -0.070 4.070 25 C -0.206 4.206 26 C 0.133 3.867 27 O -0.291 6.291 28 N -0.222 5.222 29 C -0.005 4.005 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.227 0.773 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.261 0.739 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.507 -27.410 -2.736 28.551 hybrid contribution 1.402 2.327 -0.181 2.723 sum 8.909 -25.083 -2.917 26.777 Atomic orbital electron populations 1.69963 1.06056 1.26722 1.50473 1.25034 0.94868 0.99325 0.95274 0.86580 0.79786 0.83426 0.78102 1.20653 1.21193 1.19909 1.21192 0.92970 0.90926 1.51023 0.92659 1.19029 0.93847 0.90807 0.97698 1.21893 0.99797 0.93298 1.00833 1.21533 0.91264 0.84098 1.01942 1.45402 1.10536 1.04376 1.79062 1.15987 0.85259 0.80751 0.77883 1.90937 1.14033 1.84021 1.57608 1.45153 1.08941 1.04497 1.81532 1.22131 0.98178 0.80088 0.96227 0.87424 1.23635 0.98772 1.01288 0.96893 1.23661 0.96097 0.97304 0.86147 1.88969 1.87333 1.36990 1.14823 1.21632 0.96488 0.88688 0.87011 0.89537 1.20632 1.00803 0.99407 0.94489 1.21335 0.96639 0.98148 0.90900 1.22087 1.01293 0.96251 1.00941 1.19264 0.93169 0.88540 0.85689 1.84760 1.40647 1.59339 1.44397 1.67253 1.25208 1.30639 0.99054 1.22369 0.90892 0.90418 0.96844 0.92897 0.96260 0.96233 0.92753 0.92761 0.91920 0.91887 0.77267 0.77078 0.89316 0.89084 0.88286 0.91717 0.84050 0.83829 0.73935 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 12 N -0.74 -9.71 5.56 -65.23 -0.36 -10.07 16 13 C 0.70 9.58 8.56 -86.92 -0.74 8.83 16 14 O -0.59 -10.71 15.99 5.29 0.08 -10.63 16 15 N -0.74 -6.70 5.09 -57.08 -0.29 -6.99 16 16 C 0.14 1.22 3.03 -66.30 -0.20 1.02 16 17 H 0.11 1.20 7.10 -51.93 -0.37 0.83 16 18 C -0.17 -1.26 6.89 -24.63 -0.17 -1.43 16 19 C 0.04 0.27 7.71 38.21 0.29 0.56 16 20 O -0.36 -2.89 10.50 -35.23 -0.37 -3.26 16 21 C 0.12 0.89 3.43 -27.31 -0.09 0.79 16 22 H 0.09 0.51 7.55 -51.93 -0.39 0.12 16 23 C -0.15 -1.27 4.78 -104.48 -0.50 -1.77 16 24 C -0.04 -0.34 9.82 -39.31 -0.39 -0.72 16 25 C -0.18 -1.47 10.04 -39.27 -0.39 -1.87 16 26 C 0.31 3.05 7.74 -17.12 -0.13 2.92 16 27 O -0.48 -4.07 13.56 -18.70 -0.25 -4.32 16 28 N -0.50 -5.60 10.39 -13.33 -0.14 -5.74 16 29 C 0.15 1.46 10.52 -17.57 -0.18 1.27 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.39 3.96 8.49 -40.82 -0.35 3.62 16 38 H 0.39 2.38 8.36 -40.82 -0.34 2.03 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.40 1.43 9.06 45.56 0.41 1.84 16 46 H 0.16 1.35 7.75 -52.48 -0.41 0.94 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -35.96 390.07 -9.01 -44.98 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.05 Total: 2.97 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.22 Total: -3.23 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.06 Total: -48.54 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.54 Total: -18.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.96 -9.01 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329976848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.497 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds