Wall clock time and date at job start Tue Mar 31 2020 18:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48508 * 109.46785 * 269.99216 * 3 2 1 5 5 H 1.48500 * 109.47551 * 29.99410 * 3 2 1 6 6 H 1.48504 * 109.47290 * 150.00003 * 3 2 1 7 7 C 1.37874 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99739 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00002 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99678 * 179.97438 * 13 12 11 16 16 C 1.46508 * 119.99849 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.43514 * 32.45547 * 16 15 13 18 18 C 1.54984 * 110.45235 * 269.82671 * 16 15 13 19 19 C 1.54997 * 102.01247 * 261.96969 * 18 16 15 20 20 O 1.44376 * 103.62951 * 323.17795 * 19 18 16 21 21 C 1.43743 * 106.97973 * 39.97901 * 20 19 18 22 22 H 1.09003 * 109.87663 * 93.05750 * 21 20 19 23 23 C 1.50695 * 109.88171 * 214.06303 * 21 20 19 24 24 C 1.38825 * 120.35260 * 218.26737 * 23 21 20 25 25 C 1.38389 * 118.48387 * 179.80334 * 24 23 21 26 26 C 1.38922 * 119.11075 * 0.44985 * 25 24 23 27 27 O 1.35665 * 119.68646 * 179.76820 * 26 25 24 28 28 N 1.32249 * 120.62782 * 359.79437 * 26 25 24 29 29 C 1.31961 * 121.64866 * 359.97172 * 28 26 25 30 30 H 0.97002 * 120.00027 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47421 * 59.99177 * 9 7 2 32 32 H 1.09007 * 109.46607 * 299.98962 * 9 7 2 33 33 H 1.09005 * 109.47185 * 59.99269 * 10 9 7 34 34 H 1.09000 * 109.47334 * 299.99722 * 10 9 7 35 35 H 1.08996 * 109.47067 * 59.99812 * 11 10 9 36 36 H 1.09000 * 109.46673 * 299.99927 * 11 10 9 37 37 H 0.97003 * 119.99937 * 0.02562 * 12 11 10 38 38 H 0.97000 * 120.00563 * 359.97438 * 15 13 12 39 39 H 1.09003 * 110.84226 * 143.84310 * 18 16 15 40 40 H 1.09002 * 111.05170 * 20.18947 * 18 16 15 41 41 H 1.09002 * 110.61957 * 204.59612 * 19 18 16 42 42 H 1.09000 * 110.61969 * 81.75502 * 19 18 16 43 43 H 1.08000 * 120.76523 * 0.02562 * 24 23 21 44 44 H 1.08003 * 120.44555 * 180.19695 * 25 24 23 45 45 H 0.96707 * 114.00394 * 270.02389 * 27 26 25 46 46 H 1.08007 * 119.58068 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7876 -7.5934 0.0024 15 7 2.8589 -8.3956 0.0004 16 6 2.3705 -9.7769 0.0009 17 1 1.4304 -9.8484 -0.5462 18 6 2.1958 -10.2891 1.4531 19 6 3.5083 -11.0831 1.6753 20 8 3.7563 -11.6964 0.3920 21 6 3.4235 -10.7215 -0.6105 22 1 4.3137 -10.1573 -0.8888 23 6 2.8524 -11.4086 -1.8240 24 6 3.1657 -10.9565 -3.0986 25 6 2.6231 -11.6189 -4.1858 26 6 1.7807 -12.7014 -3.9661 27 8 1.2385 -13.3563 -5.0233 28 7 1.5018 -13.0994 -2.7361 29 6 2.0076 -12.4909 -1.6800 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8905 33 1 2.8720 -3.6043 0.8905 34 1 2.8719 -3.6044 -0.8895 35 1 0.8533 -5.0451 -0.8885 36 1 0.8540 -5.0445 0.8914 37 1 3.3860 -5.9233 0.0002 38 1 3.8125 -8.2184 -0.0014 39 1 1.3274 -10.9432 1.5319 40 1 2.1202 -9.4584 2.1548 41 1 3.3715 -11.8435 2.4442 42 1 4.3232 -10.4105 1.9431 43 1 3.8209 -10.1095 -3.2388 44 1 2.8482 -11.2959 -5.1915 45 1 0.3863 -13.0012 -5.3111 46 1 1.7571 -12.8437 -0.6905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329976848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:16 Heat of formation + Delta-G solvation = -116.742333 kcal Electronic energy + Delta-G solvation = -27880.483959 eV Core-core repulsion = 23768.967897 eV Total energy + Delta-G solvation = -4111.516062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95519 -41.13832 -40.08483 -38.01278 -37.03604 -35.62286 -35.17682 -33.92561 -33.09305 -32.28243 -31.55554 -28.90177 -28.04375 -25.19571 -24.96398 -24.27920 -23.24160 -22.28486 -22.24877 -21.60938 -19.84651 -19.36831 -18.56879 -18.24843 -17.88006 -17.57728 -16.89542 -16.74677 -16.60950 -16.30577 -15.80466 -15.73946 -15.46629 -15.30108 -15.10667 -14.92725 -14.33109 -14.25519 -14.19938 -13.74723 -13.63324 -13.52232 -13.15383 -12.97765 -12.74402 -12.70318 -12.53020 -12.35552 -12.27515 -12.16271 -11.65172 -11.64261 -11.30623 -11.14302 -11.01385 -10.89251 -10.54286 -10.46356 -10.40782 -9.96021 -9.68503 -8.18434 -6.29725 -0.13208 0.18446 1.42667 1.43846 1.54523 1.59986 2.11255 2.40636 2.42676 2.69094 2.90649 3.15489 3.30720 3.41509 3.47240 3.70925 3.80798 3.93219 3.97206 4.04907 4.18875 4.23654 4.26049 4.33151 4.37141 4.58450 4.65619 4.74980 4.86407 4.87539 4.93059 4.98136 5.02002 5.03280 5.14913 5.19286 5.38402 5.47844 5.48287 5.55827 5.73183 5.80196 5.86006 5.97531 6.23869 6.56756 6.87316 6.88016 7.09690 7.39890 7.56829 8.93602 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.001908 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.633891 B =14668.878175 C =15687.138952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.727 5.727 13 C 0.701 3.299 14 O -0.637 6.637 15 N -0.720 5.720 16 C 0.140 3.860 17 H 0.080 0.920 18 C -0.166 4.166 19 C 0.049 3.951 20 O -0.374 6.374 21 C 0.132 3.868 22 H 0.112 0.888 23 C -0.156 4.156 24 C -0.045 4.045 25 C -0.184 4.184 26 C 0.295 3.705 27 O -0.495 6.495 28 N -0.536 5.536 29 C 0.137 3.863 30 H 0.263 0.737 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.420 0.580 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -25.842 -2.834 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.383 5.383 13 C 0.401 3.599 14 O -0.518 6.518 15 N -0.378 5.378 16 C 0.034 3.966 17 H 0.098 0.902 18 C -0.205 4.205 19 C -0.027 4.027 20 O -0.293 6.293 21 C 0.073 3.927 22 H 0.129 0.871 23 C -0.159 4.159 24 C -0.070 4.070 25 C -0.205 4.205 26 C 0.117 3.883 27 O -0.305 6.305 28 N -0.255 5.255 29 C -0.020 4.020 30 H 0.071 0.929 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.250 0.750 38 H 0.253 0.747 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.187 0.813 44 H 0.183 0.817 45 H 0.281 0.719 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.785 -27.204 -2.805 29.398 hybrid contribution 0.349 2.184 -0.173 2.219 sum 11.134 -25.020 -2.978 27.547 Atomic orbital electron populations 1.70113 1.07945 1.27746 1.51773 1.26031 0.95746 1.03581 0.94898 0.85423 0.78704 0.78331 0.78425 1.19858 1.21212 1.18346 1.21686 0.93779 0.91962 1.50263 0.91418 1.18951 0.94502 0.93024 0.95048 1.21582 0.98383 0.91608 1.02209 1.21057 0.91340 0.84646 1.00407 1.44998 1.10910 1.03415 1.78972 1.16092 0.84982 0.81324 0.77497 1.90917 1.16500 1.84727 1.59699 1.44864 1.09360 1.03604 1.79931 1.22112 0.97708 0.79926 0.96893 0.90154 1.23593 0.99915 1.01171 0.95808 1.23758 0.95428 0.97728 0.85760 1.88972 1.87272 1.37521 1.15522 1.21579 0.96589 0.88168 0.86369 0.87099 1.20798 1.00535 0.99083 0.95483 1.21707 0.96448 0.98561 0.90300 1.22339 1.00437 0.95496 1.02253 1.19555 0.93933 0.89300 0.85556 1.84711 1.41954 1.59857 1.44013 1.67200 1.26469 1.31906 0.99970 1.22512 0.91517 0.91178 0.96766 0.92867 0.99019 0.99001 0.91278 0.91229 0.93615 0.93590 0.74999 0.74739 0.89550 0.89935 0.86919 0.90103 0.81272 0.81657 0.71940 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C 0.15 5.03 5.67 86.38 0.49 5.52 16 12 N -0.73 -17.80 5.56 -478.54 -2.66 -20.47 16 13 C 0.70 18.34 8.56 179.05 1.53 19.88 16 14 O -0.64 -23.45 15.99 -3.98 -0.06 -23.52 16 15 N -0.72 -11.38 5.09 -452.78 -2.30 -13.69 16 16 C 0.14 2.25 3.03 46.04 0.14 2.39 16 17 H 0.08 1.81 7.10 -2.39 -0.02 1.79 16 18 C -0.17 -2.33 6.89 31.96 0.22 -2.11 16 19 C 0.05 0.48 7.71 72.67 0.56 1.04 16 20 O -0.37 -5.15 10.50 -148.98 -1.56 -6.71 16 21 C 0.13 1.64 3.43 30.22 0.10 1.75 16 22 H 0.11 0.86 7.55 -2.39 -0.02 0.85 16 23 C -0.16 -2.45 4.78 -19.77 -0.09 -2.54 16 24 C -0.04 -0.59 9.82 22.45 0.22 -0.37 16 25 C -0.18 -2.68 10.04 22.47 0.23 -2.46 16 26 C 0.29 5.72 7.74 84.79 0.66 6.38 16 27 O -0.50 -8.26 13.56 -89.82 -1.22 -9.48 16 28 N -0.54 -12.19 10.39 -308.96 -3.21 -15.40 16 29 C 0.14 2.64 10.52 84.63 0.89 3.53 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.41 6.97 8.49 -92.71 -0.79 6.19 16 38 H 0.41 3.46 8.36 -92.71 -0.78 2.69 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.42 2.97 9.06 -74.05 -0.67 2.30 16 46 H 0.17 2.85 7.75 -2.91 -0.02 2.82 16 Total: -1.00 -79.94 390.07 -3.96 -83.90 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -1.20 Total: 14.69 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.95 Total: 1.88 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -7.89 Total: -105.80 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.85 Total: -39.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -79.94 -3.96 -83.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329976848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.844 kcal (2) G-P(sol) polarization free energy of solvation -79.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds