Wall clock time and date at job start Tue Mar 31 2020 18:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47070 * 104.75110 * 3 2 1 5 5 H 1.09003 * 109.52198 * 55.08117 * 4 3 2 6 6 C 1.53045 * 109.49624 * 175.15780 * 4 3 2 7 7 C 1.53038 * 109.53721 * 181.31841 * 6 4 3 8 8 C 1.53630 * 109.24219 * 298.51151 * 7 6 4 9 9 N 1.46928 * 108.54082 * 54.85654 * 8 7 6 10 10 C 1.34782 * 120.63065 * 126.36750 * 9 8 7 11 11 O 1.21341 * 120.00047 * 188.41585 * 10 9 8 12 12 C 1.49452 * 119.99588 * 8.41967 * 10 9 8 13 13 O 1.21345 * 120.00301 * 6.86301 * 12 10 9 14 14 N 1.34779 * 119.99757 * 186.59384 * 12 10 9 15 15 C 1.47427 * 125.64439 * 359.68330 * 14 12 10 16 16 C 1.55131 * 104.71832 * 155.82505 * 15 14 12 17 17 C 1.55160 * 101.48813 * 37.29482 * 16 15 14 18 18 O 1.42896 * 110.72074 * 82.69480 * 17 16 15 19 19 C 1.50699 * 110.71862 * 205.96993 * 17 16 15 20 20 H 1.08005 * 120.00076 * 354.97551 * 19 17 16 21 21 C 1.37877 * 119.99693 * 174.97628 * 19 17 16 22 22 N 1.31517 * 119.99985 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99754 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47180 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47078 * 120.00164 * 23 21 19 26 26 H 1.48499 * 109.47019 * 239.99592 * 23 21 19 27 27 C 1.47019 * 125.65035 * 179.97438 * 14 12 10 28 28 C 1.46924 * 118.74031 * 306.09327 * 9 8 7 29 29 H 1.08995 * 109.47326 * 344.75167 * 3 2 1 30 30 H 1.09007 * 109.46783 * 224.75010 * 3 2 1 31 31 H 1.09001 * 109.46285 * 301.33459 * 6 4 3 32 32 H 1.09000 * 109.45743 * 61.31498 * 6 4 3 33 33 H 1.09002 * 109.50044 * 58.58378 * 7 6 4 34 34 H 1.08996 * 109.50019 * 178.65236 * 7 6 4 35 35 H 1.08994 * 109.74047 * 295.11992 * 8 7 6 36 36 H 1.09001 * 109.66525 * 174.54635 * 8 7 6 37 37 H 1.09003 * 110.37032 * 274.74961 * 15 14 12 38 38 H 1.08991 * 110.36966 * 37.07707 * 15 14 12 39 39 H 1.09005 * 111.19407 * 279.18975 * 16 15 14 40 40 H 1.09005 * 110.93879 * 155.28800 * 16 15 14 41 41 H 0.96693 * 114.00314 * 185.01873 * 18 17 16 42 42 H 0.97001 * 119.99556 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.88162 * 300.43715 * 27 14 12 44 44 H 1.09001 * 109.87984 * 61.59892 * 27 14 12 45 45 H 1.08996 * 109.58744 * 173.64537 * 28 9 8 46 46 H 1.09001 * 109.58794 * 293.93128 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1178 0.3682 -1.3950 5 1 2.6843 1.3200 -1.7021 6 6 4.6433 0.4872 -1.3663 7 6 5.1516 0.8870 -2.7533 8 6 4.7711 -0.2040 -3.7658 9 7 3.3197 -0.4214 -3.6949 10 6 2.5597 -0.3510 -4.8058 11 8 1.3500 -0.3798 -4.7162 12 6 3.2071 -0.2374 -6.1481 13 8 4.4124 -0.3337 -6.2505 14 7 2.4518 -0.0335 -7.2455 15 6 0.9828 0.0895 -7.2666 16 6 0.6738 0.9028 -8.5510 17 6 1.7365 0.3439 -9.5338 18 8 1.2883 -0.8794 -10.1209 19 6 2.0647 1.3591 -10.5980 20 1 1.5171 2.2889 -10.6446 21 6 3.0639 1.1009 -11.5123 22 7 3.7310 -0.0311 -11.4552 23 14 3.4712 2.3596 -12.8310 24 1 2.5842 3.5407 -12.6788 25 1 4.8876 2.7834 -12.6903 26 1 3.2664 1.7555 -14.1720 27 6 2.9556 0.0972 -8.6204 28 6 2.7134 -0.7231 -2.3911 29 1 2.9717 -0.9906 0.2703 30 1 2.9709 0.7307 0.7236 31 1 4.9348 1.2461 -0.6402 32 1 5.0771 -0.4718 -1.0833 33 1 4.6990 1.8338 -3.0478 34 1 6.2359 0.9949 -2.7263 35 1 5.2916 -1.1301 -3.5221 36 1 5.0438 0.1173 -4.7711 37 1 0.5202 -0.8961 -7.3185 38 1 0.6344 0.6271 -6.3848 39 1 0.8179 1.9705 -8.3856 40 1 -0.3353 0.6976 -8.9087 41 1 1.9462 -1.3097 -10.6839 42 1 4.4338 -0.2128 -12.0986 43 1 3.6437 0.9400 -8.6845 44 1 3.4621 -0.8209 -8.9184 45 1 1.6280 -0.7444 -2.4890 46 1 3.0676 -1.6919 -2.0388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330447215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:43 Heat of formation + Delta-G solvation = -77.760748 kcal Electronic energy + Delta-G solvation = -29719.910070 eV Core-core repulsion = 25610.084377 eV Total energy + Delta-G solvation = -4109.825693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83852 -39.16489 -37.90502 -37.40671 -36.66204 -34.54644 -33.74443 -32.27760 -32.12970 -30.20644 -28.39799 -27.87304 -26.55267 -25.30158 -23.34656 -22.98774 -21.87691 -20.45791 -19.63766 -18.96826 -17.79375 -17.23171 -16.90286 -16.77494 -16.05896 -15.79610 -15.54093 -15.19844 -14.72723 -14.43854 -14.33523 -14.17973 -14.13681 -13.81553 -13.28558 -13.11717 -13.04738 -13.01909 -12.90410 -12.69243 -12.40646 -12.32474 -11.81532 -11.78015 -11.56904 -11.38919 -11.34293 -11.20006 -11.11190 -10.88850 -10.85855 -10.64014 -10.49641 -10.48512 -10.14819 -9.34728 -8.92642 -8.80841 -8.68283 -8.36321 -8.06556 -6.33165 -4.41613 1.70713 2.42027 2.50918 2.55871 3.17595 3.26733 3.30484 3.47130 3.60860 3.68614 4.23575 4.30242 4.36113 4.44278 4.58677 4.77935 4.91673 4.95208 5.01249 5.09558 5.16233 5.32606 5.36397 5.45663 5.51946 5.64991 5.69172 5.76044 5.77614 5.83908 5.99248 6.01646 6.09196 6.25062 6.36622 6.48506 6.73321 6.79256 6.81269 7.10433 7.16225 7.28633 7.29759 7.68335 7.75549 7.98201 8.00243 8.37061 8.62827 9.25096 9.33909 10.74661 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.002797 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.676298 B =10007.663680 C =10744.110759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.199 3.801 3 C -0.019 4.019 4 C -0.099 4.099 5 H 0.086 0.914 6 C -0.114 4.114 7 C -0.135 4.135 8 C 0.067 3.933 9 N -0.588 5.588 10 C 0.512 3.488 11 O -0.517 6.517 12 C 0.508 3.492 13 O -0.529 6.529 14 N -0.571 5.571 15 C 0.100 3.900 16 C -0.121 4.121 17 C 0.247 3.753 18 O -0.583 6.583 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.894 5.894 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.100 3.900 28 C 0.109 3.891 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.382 0.618 42 H 0.270 0.730 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -0.030 20.319 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.119 4.119 3 C -0.059 4.059 4 C -0.120 4.120 5 H 0.104 0.896 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.055 4.055 9 N -0.322 5.322 10 C 0.295 3.705 11 O -0.392 6.392 12 C 0.291 3.709 13 O -0.410 6.410 14 N -0.302 5.302 15 C -0.022 4.022 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.391 6.391 19 C -0.574 4.574 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.021 4.021 28 C -0.014 4.014 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.759 -0.068 20.580 20.765 hybrid contribution 1.349 0.377 -0.906 1.668 sum 4.108 0.309 19.675 20.101 Atomic orbital electron populations 1.81276 1.13072 1.08323 1.07944 1.29188 0.95365 0.93672 0.93687 1.19341 0.81746 1.05675 0.99146 1.21545 0.97320 1.00512 0.92618 0.89574 1.21596 0.93131 1.02451 0.97953 1.22026 1.01541 0.99334 0.94453 1.23020 0.78288 0.98789 1.05360 1.47865 1.09178 1.68956 1.06204 1.20382 0.86899 0.77429 0.85797 1.90716 1.13697 1.48145 1.86652 1.19563 0.86637 0.80006 0.84687 1.90434 1.13589 1.52181 1.84808 1.48760 1.09055 1.64696 1.07730 1.22662 0.79081 1.00971 0.99466 1.22871 1.00485 0.98927 0.93605 1.19525 0.87020 0.83586 0.89182 1.86137 1.45987 1.39191 1.67799 1.21541 1.18810 1.03650 1.13402 0.91355 1.25086 0.95005 0.95740 0.97496 1.69705 1.23301 1.23465 1.36859 0.86336 0.78233 0.81201 0.81082 1.19567 1.20769 1.20720 1.23260 0.99885 1.02221 0.76711 1.21770 1.00223 0.97278 0.82086 0.87057 0.86786 0.91047 0.91059 0.91455 0.90200 0.91413 0.83738 0.91129 0.89909 0.90408 0.90292 0.76806 0.92016 0.90748 0.90933 0.89027 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.46 18.54 42.15 0.78 -4.68 16 2 C 0.20 1.74 14.51 -20.76 -0.30 1.44 16 3 C -0.02 -0.07 5.19 -29.52 -0.15 -0.23 16 4 C -0.10 -0.64 2.31 -90.50 -0.21 -0.85 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.11 -0.57 5.16 -26.69 -0.14 -0.71 16 7 C -0.14 -1.04 6.10 -26.38 -0.16 -1.21 16 8 C 0.07 0.73 6.01 -3.48 -0.02 0.71 16 9 N -0.59 -7.50 2.97 -173.01 -0.51 -8.02 16 10 C 0.51 8.55 7.68 -11.58 -0.09 8.47 16 11 O -0.52 -9.50 13.31 5.50 0.07 -9.43 16 12 C 0.51 9.77 7.77 -11.58 -0.09 9.68 16 13 O -0.53 -10.58 13.51 5.50 0.07 -10.50 16 14 N -0.57 -11.82 3.32 -170.89 -0.57 -12.39 16 15 C 0.10 1.95 5.97 -2.41 -0.01 1.93 16 16 C -0.12 -2.47 6.24 -24.46 -0.15 -2.62 16 17 C 0.25 5.90 0.85 -89.94 -0.08 5.82 16 18 O -0.58 -14.48 13.08 -35.23 -0.46 -14.94 16 19 C -0.54 -13.72 8.12 -34.44 -0.28 -14.00 16 20 H 0.07 1.73 7.78 -52.48 -0.41 1.33 16 21 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 22 N -0.89 -23.13 10.98 55.43 0.61 -22.52 16 23 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.10 2.33 5.23 -3.07 -0.02 2.32 16 28 C 0.11 1.06 5.43 -3.71 -0.02 1.04 16 29 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.15 2.05 4.31 -54.82 -0.24 1.82 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.52 6.33 -51.93 -0.33 1.19 16 39 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.38 9.61 7.47 45.56 0.34 9.95 16 42 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.07 1.85 7.81 -51.93 -0.41 1.45 16 44 H 0.07 1.82 7.92 -51.93 -0.41 1.41 16 45 H 0.09 1.12 6.44 -51.93 -0.33 0.78 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -30.83 372.41 -7.22 -38.05 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.99 Total: 10.33 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -1.82 Total: 13.48 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.31 Total: -47.61 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.31 Total: -34.87 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.83 -7.22 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.713 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds