Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47070 * 104.75110 * 3 2 1 5 5 H 1.09003 * 109.52198 * 55.08117 * 4 3 2 6 6 C 1.53045 * 109.49624 * 175.15780 * 4 3 2 7 7 C 1.53038 * 109.53721 * 181.31841 * 6 4 3 8 8 C 1.53630 * 109.24219 * 298.51151 * 7 6 4 9 9 N 1.46928 * 108.54082 * 54.85654 * 8 7 6 10 10 C 1.34782 * 120.63065 * 126.36750 * 9 8 7 11 11 O 1.21341 * 120.00047 * 188.41585 * 10 9 8 12 12 C 1.49452 * 119.99588 * 8.41967 * 10 9 8 13 13 O 1.21345 * 120.00301 * 6.86301 * 12 10 9 14 14 N 1.34779 * 119.99757 * 186.59384 * 12 10 9 15 15 C 1.47427 * 125.64439 * 359.68330 * 14 12 10 16 16 C 1.55131 * 104.71832 * 155.82505 * 15 14 12 17 17 C 1.55160 * 101.48813 * 37.29482 * 16 15 14 18 18 O 1.42896 * 110.72074 * 82.69480 * 17 16 15 19 19 C 1.50699 * 110.71862 * 205.96993 * 17 16 15 20 20 H 1.08005 * 120.00076 * 354.97551 * 19 17 16 21 21 C 1.37877 * 119.99693 * 174.97628 * 19 17 16 22 22 N 1.31517 * 119.99985 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99754 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47180 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47078 * 120.00164 * 23 21 19 26 26 H 1.48499 * 109.47019 * 239.99592 * 23 21 19 27 27 C 1.47019 * 125.65035 * 179.97438 * 14 12 10 28 28 C 1.46924 * 118.74031 * 306.09327 * 9 8 7 29 29 H 1.08995 * 109.47326 * 344.75167 * 3 2 1 30 30 H 1.09007 * 109.46783 * 224.75010 * 3 2 1 31 31 H 1.09001 * 109.46285 * 301.33459 * 6 4 3 32 32 H 1.09000 * 109.45743 * 61.31498 * 6 4 3 33 33 H 1.09002 * 109.50044 * 58.58378 * 7 6 4 34 34 H 1.08996 * 109.50019 * 178.65236 * 7 6 4 35 35 H 1.08994 * 109.74047 * 295.11992 * 8 7 6 36 36 H 1.09001 * 109.66525 * 174.54635 * 8 7 6 37 37 H 1.09003 * 110.37032 * 274.74961 * 15 14 12 38 38 H 1.08991 * 110.36966 * 37.07707 * 15 14 12 39 39 H 1.09005 * 111.19407 * 279.18975 * 16 15 14 40 40 H 1.09005 * 110.93879 * 155.28800 * 16 15 14 41 41 H 0.96693 * 114.00314 * 185.01873 * 18 17 16 42 42 H 0.97001 * 119.99556 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.88162 * 300.43715 * 27 14 12 44 44 H 1.09001 * 109.87984 * 61.59892 * 27 14 12 45 45 H 1.08996 * 109.58744 * 173.64537 * 28 9 8 46 46 H 1.09001 * 109.58794 * 293.93128 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1178 0.3682 -1.3950 5 1 2.6843 1.3200 -1.7021 6 6 4.6433 0.4872 -1.3663 7 6 5.1516 0.8870 -2.7533 8 6 4.7711 -0.2040 -3.7658 9 7 3.3197 -0.4214 -3.6949 10 6 2.5597 -0.3510 -4.8058 11 8 1.3500 -0.3798 -4.7162 12 6 3.2071 -0.2374 -6.1481 13 8 4.4124 -0.3337 -6.2505 14 7 2.4518 -0.0335 -7.2455 15 6 0.9828 0.0895 -7.2666 16 6 0.6738 0.9028 -8.5510 17 6 1.7365 0.3439 -9.5338 18 8 1.2883 -0.8794 -10.1209 19 6 2.0647 1.3591 -10.5980 20 1 1.5171 2.2889 -10.6446 21 6 3.0639 1.1009 -11.5123 22 7 3.7310 -0.0311 -11.4552 23 14 3.4712 2.3596 -12.8310 24 1 2.5842 3.5407 -12.6788 25 1 4.8876 2.7834 -12.6903 26 1 3.2664 1.7555 -14.1720 27 6 2.9556 0.0972 -8.6204 28 6 2.7134 -0.7231 -2.3911 29 1 2.9717 -0.9906 0.2703 30 1 2.9709 0.7307 0.7236 31 1 4.9348 1.2461 -0.6402 32 1 5.0771 -0.4718 -1.0833 33 1 4.6990 1.8338 -3.0478 34 1 6.2359 0.9949 -2.7263 35 1 5.2916 -1.1301 -3.5221 36 1 5.0438 0.1173 -4.7711 37 1 0.5202 -0.8961 -7.3185 38 1 0.6344 0.6271 -6.3848 39 1 0.8179 1.9705 -8.3856 40 1 -0.3353 0.6976 -8.9087 41 1 1.9462 -1.3097 -10.6839 42 1 4.4338 -0.2128 -12.0986 43 1 3.6437 0.9400 -8.6845 44 1 3.4621 -0.8209 -8.9184 45 1 1.6280 -0.7444 -2.4890 46 1 3.0676 -1.6919 -2.0388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330447215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -99.969884 kcal Electronic energy + Delta-G solvation = -29720.873130 eV Core-core repulsion = 25610.084377 eV Total energy + Delta-G solvation = -4110.788754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13220 -40.45182 -39.08336 -38.94728 -37.51771 -36.20936 -34.69705 -34.25908 -32.83919 -31.92473 -29.80520 -28.99034 -27.85357 -26.74752 -24.82604 -23.73033 -23.21436 -21.56183 -21.18817 -20.20132 -19.14867 -18.46596 -18.19606 -18.05129 -17.50948 -17.08541 -16.89249 -16.50892 -16.21040 -15.77690 -15.27558 -15.18847 -14.84852 -14.84612 -14.81732 -14.73666 -14.46903 -14.15175 -14.02324 -13.74003 -13.56466 -13.48862 -13.42552 -13.09059 -12.88790 -12.64404 -12.57292 -12.40268 -12.27345 -12.23623 -12.13688 -11.94281 -11.69745 -11.54769 -11.44929 -11.17917 -10.69011 -10.40014 -10.16834 -9.87213 -9.67324 -8.27850 -6.43629 0.28316 1.19466 1.41261 1.44753 1.55295 1.84375 1.90227 2.03527 2.32515 2.40390 2.98084 3.08026 3.13791 3.74169 3.78219 3.83618 3.95003 3.99079 4.11983 4.15983 4.29537 4.33055 4.39316 4.55270 4.58582 4.68110 4.72423 4.78628 4.88203 4.89961 4.96598 5.01563 5.03878 5.04746 5.17052 5.21484 5.27976 5.35704 5.39179 5.49216 5.54546 5.71331 5.95281 6.02825 6.29293 6.56755 6.65477 6.69745 6.87367 7.25407 7.33480 8.78790 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.002797 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.676298 B =10007.663680 C =10744.110759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.227 3.773 3 C -0.011 4.011 4 C -0.091 4.091 5 H 0.067 0.933 6 C -0.105 4.105 7 C -0.132 4.132 8 C 0.061 3.939 9 N -0.574 5.574 10 C 0.510 3.490 11 O -0.541 6.541 12 C 0.503 3.497 13 O -0.540 6.540 14 N -0.584 5.584 15 C 0.112 3.888 16 C -0.115 4.115 17 C 0.234 3.766 18 O -0.587 6.587 19 C -0.556 4.556 20 H 0.067 0.933 21 C 0.028 3.972 22 N -0.913 5.913 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.120 3.880 28 C 0.100 3.900 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.377 0.623 42 H 0.271 0.729 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 0.429 23.149 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.090 4.090 3 C -0.051 4.051 4 C -0.112 4.112 5 H 0.086 0.914 6 C -0.142 4.142 7 C -0.170 4.170 8 C -0.059 4.059 9 N -0.307 5.307 10 C 0.292 3.708 11 O -0.419 6.419 12 C 0.287 3.713 13 O -0.421 6.421 14 N -0.315 5.315 15 C -0.010 4.010 16 C -0.153 4.153 17 C 0.194 3.806 18 O -0.395 6.395 19 C -0.594 4.594 20 H 0.085 0.915 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.790 3.210 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.204 1.204 27 C -0.002 4.002 28 C -0.021 4.021 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.423 0.391 23.467 23.884 hybrid contribution 0.976 0.198 -1.736 2.001 sum 5.399 0.589 21.731 22.399 Atomic orbital electron populations 1.81303 1.15861 1.11277 1.10574 1.30152 0.96300 0.91203 0.91307 1.19722 0.78171 1.09021 0.98190 1.21479 0.98697 0.98187 0.92848 0.91440 1.21603 0.91286 1.04793 0.96505 1.22015 1.02711 0.97058 0.95176 1.23051 0.77124 1.00961 1.04805 1.48025 1.09838 1.66595 1.06195 1.19883 0.86745 0.78483 0.85677 1.90702 1.14342 1.50147 1.86737 1.20227 0.86569 0.78952 0.85558 1.90465 1.14172 1.51995 1.85495 1.48781 1.09607 1.65953 1.07187 1.22583 0.78320 1.00688 0.99370 1.22867 0.99976 0.99396 0.93023 1.19709 0.88378 0.83040 0.89514 1.86128 1.45937 1.39685 1.67798 1.21793 1.19259 1.04043 1.14347 0.91529 1.25790 0.94839 0.97370 0.99282 1.69798 1.23439 1.24613 1.37354 0.85402 0.77880 0.79138 0.78589 1.19152 1.20591 1.20436 1.22746 0.99166 0.99722 0.78593 1.22147 0.98608 1.00276 0.81062 0.83398 0.82739 0.87973 0.88574 0.93039 0.88305 0.89493 0.87238 0.91578 0.88649 0.89558 0.89314 0.77416 0.91920 0.93098 0.93598 0.91867 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.96 18.54 20.01 0.37 -12.59 16 2 C 0.23 3.49 14.51 89.44 1.30 4.79 16 3 C -0.01 -0.03 5.19 28.79 0.15 0.12 16 4 C -0.09 -0.82 2.31 -10.71 -0.02 -0.84 16 5 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 6 C -0.10 -0.49 5.16 30.62 0.16 -0.33 16 7 C -0.13 -1.61 6.10 30.82 0.19 -1.42 16 8 C 0.06 1.25 6.01 86.51 0.52 1.77 16 9 N -0.57 -14.00 2.97 -819.64 -2.43 -16.43 16 10 C 0.51 17.23 7.68 87.27 0.67 17.90 16 11 O -0.54 -20.23 13.31 -3.22 -0.04 -20.28 16 12 C 0.50 19.94 7.77 87.27 0.68 20.62 16 13 O -0.54 -22.35 13.51 -3.23 -0.04 -22.40 16 14 N -0.58 -25.04 3.32 -812.94 -2.70 -27.74 16 15 C 0.11 4.43 5.97 86.93 0.52 4.95 16 16 C -0.11 -4.74 6.24 32.07 0.20 -4.54 16 17 C 0.23 11.47 0.85 -10.35 -0.01 11.46 16 18 O -0.59 -30.10 13.08 -148.98 -1.95 -32.05 16 19 C -0.56 -29.03 8.12 25.60 0.21 -28.82 16 20 H 0.07 3.41 7.78 -2.91 -0.02 3.39 16 21 C 0.03 1.47 5.28 84.65 0.45 1.91 16 22 N -0.91 -48.39 10.98 21.45 0.24 -48.15 16 23 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 C 0.12 5.86 5.23 86.73 0.45 6.32 16 28 C 0.10 1.70 5.43 86.36 0.47 2.17 16 29 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.16 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 3.12 4.31 -48.20 -0.21 2.91 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.10 3.54 6.33 -2.39 -0.02 3.53 16 39 H 0.09 3.38 8.04 -2.38 -0.02 3.36 16 40 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 41 H 0.38 19.75 7.47 -74.06 -0.55 19.20 16 42 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.05 2.67 7.81 -2.39 -0.02 2.65 16 44 H 0.05 2.44 7.92 -2.39 -0.02 2.42 16 45 H 0.06 1.49 6.44 -2.39 -0.02 1.48 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.51 372.41 1.66 -70.85 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.27 Total: 29.33 kcal Atomic # 6 Polarization: 30.13 SS G_CDS: 5.93 Total: 36.05 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.53 Total: -104.91 kcal Atomic # 8 Polarization: -72.69 SS G_CDS: -2.03 Total: -74.72 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -72.51 1.66 -70.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.115 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds