Wall clock time and date at job start Tue Mar 31 2020 18:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46942 * 134.69929 * 3 2 1 5 5 H 1.09000 * 109.52787 * 55.08198 * 4 3 2 6 6 C 1.53045 * 109.49650 * 175.16176 * 4 3 2 7 7 C 1.53037 * 109.53780 * 181.31474 * 6 4 3 8 8 C 1.53626 * 109.24248 * 298.50858 * 7 6 4 9 9 N 1.46927 * 108.53907 * 54.86236 * 8 7 6 10 10 C 1.34775 * 120.63102 * 126.37300 * 9 8 7 11 11 O 1.21355 * 120.00055 * 188.42432 * 10 9 8 12 12 C 1.49445 * 120.00384 * 8.41381 * 10 9 8 13 13 O 1.21360 * 119.99621 * 6.75763 * 12 10 9 14 14 N 1.34776 * 120.00492 * 186.76044 * 12 10 9 15 15 C 1.47015 * 125.64569 * 0.02562 * 14 12 10 16 16 C 1.54331 * 107.40277 * 178.83154 * 15 14 12 17 17 C 1.55401 * 102.82691 * 337.98114 * 16 15 14 18 18 O 1.42899 * 110.92648 * 277.25092 * 17 16 15 19 19 C 1.50703 * 111.03600 * 153.46785 * 17 16 15 20 20 H 1.08000 * 120.00073 * 6.23194 * 19 17 16 21 21 C 1.37875 * 119.99857 * 186.22951 * 19 17 16 22 22 N 1.31512 * 119.99939 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99823 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47169 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.46953 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47026 * 300.00063 * 23 21 19 27 27 C 1.47428 * 125.64756 * 179.97438 * 14 12 10 28 28 C 1.46926 * 118.73842 * 306.08531 * 9 8 7 29 29 H 1.09003 * 109.46795 * 14.69631 * 3 2 1 30 30 H 1.08992 * 109.46713 * 254.69973 * 3 2 1 31 31 H 1.08995 * 109.46069 * 301.33686 * 6 4 3 32 32 H 1.09000 * 109.45773 * 61.29643 * 6 4 3 33 33 H 1.08993 * 109.49837 * 58.58878 * 7 6 4 34 34 H 1.09007 * 109.49828 * 178.65208 * 7 6 4 35 35 H 1.08991 * 109.74181 * 295.12088 * 8 7 6 36 36 H 1.09003 * 109.66342 * 174.55165 * 8 7 6 37 37 H 1.08998 * 109.89088 * 298.32857 * 15 14 12 38 38 H 1.09004 * 109.88332 * 59.34463 * 15 14 12 39 39 H 1.08995 * 110.71608 * 96.25171 * 16 15 14 40 40 H 1.08999 * 110.72074 * 219.52197 * 16 15 14 41 41 H 0.96694 * 113.99942 * 173.70663 * 18 17 16 42 42 H 0.97004 * 120.00071 * 179.97438 * 22 21 19 43 43 H 1.08991 * 110.36839 * 322.99211 * 27 14 12 44 44 H 1.08997 * 110.36626 * 85.32682 * 27 14 12 45 45 H 1.08994 * 109.58789 * 173.65044 * 28 9 8 46 46 H 1.09006 * 109.58764 * 293.93983 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.0155 -1.0253 5 1 2.6841 1.9935 -0.8163 6 6 4.6431 1.1044 -0.9415 7 6 5.1511 2.1431 -1.9439 8 6 4.7703 1.7032 -3.3657 9 7 3.3189 1.4795 -3.4125 10 6 2.5587 2.0950 -4.3398 11 8 1.3489 2.0254 -4.2761 12 6 3.2057 2.8633 -5.4463 13 8 4.4113 2.8325 -5.5822 14 7 2.4505 3.5904 -6.2933 15 6 0.9865 3.7160 -6.2434 16 6 0.5656 4.6665 -7.3841 17 6 1.8674 5.4681 -7.6632 18 8 2.0066 6.5520 -6.7424 19 6 1.9029 5.9638 -9.0859 20 1 1.0431 5.8307 -9.7257 21 6 3.0331 6.5872 -9.5707 22 7 4.0799 6.7497 -8.7914 23 14 3.0769 7.2022 -11.3340 24 1 1.9998 8.2045 -11.5356 25 1 4.3945 7.8306 -11.6065 26 1 2.8708 6.0610 -12.2615 27 6 2.9556 4.3924 -7.4225 28 6 2.7128 0.5672 -2.4332 29 1 2.9718 -0.9933 -0.2607 30 1 2.9712 0.2720 0.9912 31 1 4.9348 1.3994 0.0664 32 1 5.0768 0.1320 -1.1749 33 1 4.6986 3.1105 -1.7262 34 1 6.2355 2.2232 -1.8669 35 1 5.2907 0.7791 -3.6170 36 1 5.0428 2.4834 -4.0765 37 1 0.5254 2.7387 -6.3862 38 1 0.6827 4.1323 -5.2829 39 1 0.2649 4.1010 -8.2660 40 1 -0.2358 5.3293 -7.0578 41 1 2.8483 7.0228 -6.8135 42 1 4.8752 7.1880 -9.1325 43 1 3.9028 4.8632 -7.1596 44 1 3.0740 3.7682 -8.3081 45 1 1.6274 0.5975 -2.5284 46 1 3.0670 -0.4482 -2.6116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330447627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:46 Heat of formation + Delta-G solvation = -78.494894 kcal Electronic energy + Delta-G solvation = -29779.749733 eV Core-core repulsion = 25669.892205 eV Total energy + Delta-G solvation = -4109.857528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80392 -39.14190 -37.87837 -37.36118 -36.63956 -34.50207 -33.72634 -32.27743 -32.10241 -30.27374 -28.37795 -27.86398 -26.53006 -25.29543 -23.34638 -22.96012 -21.81264 -20.40275 -19.70658 -18.90694 -17.77553 -17.23877 -16.87941 -16.73893 -16.09573 -15.67224 -15.50747 -15.13227 -14.66125 -14.58594 -14.30897 -14.18201 -14.12033 -13.82461 -13.29307 -13.18206 -13.07366 -12.92586 -12.87442 -12.64059 -12.38279 -12.30465 -11.82094 -11.68903 -11.54955 -11.37159 -11.30791 -11.17843 -11.05848 -10.92376 -10.83412 -10.60180 -10.52375 -10.44435 -10.23513 -9.39056 -8.89504 -8.80276 -8.70099 -8.44039 -7.93882 -6.32415 -4.41799 1.73489 2.44086 2.52462 2.57828 3.20217 3.25858 3.28102 3.50842 3.62549 3.70407 4.23328 4.32451 4.38348 4.46562 4.61138 4.80684 4.93617 4.95308 5.03674 5.11102 5.18394 5.35180 5.38939 5.45312 5.53777 5.67438 5.71815 5.76514 5.78814 5.80960 5.99993 6.04548 6.12064 6.27489 6.38165 6.48344 6.70515 6.78752 6.84184 7.11874 7.16427 7.27279 7.31207 7.69475 7.76851 7.97729 8.02892 8.39472 8.62135 9.25287 9.33880 10.74796 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002784 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.159039 B =10055.982416 C =10835.674282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.199 3.801 3 C -0.018 4.018 4 C -0.100 4.100 5 H 0.086 0.914 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.067 3.933 9 N -0.588 5.588 10 C 0.511 3.489 11 O -0.517 6.517 12 C 0.510 3.490 13 O -0.529 6.529 14 N -0.570 5.570 15 C 0.110 3.890 16 C -0.121 4.121 17 C 0.249 3.751 18 O -0.581 6.581 19 C -0.537 4.537 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.091 3.909 28 C 0.109 3.891 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.381 0.619 42 H 0.271 0.729 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -12.253 15.115 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.119 4.119 3 C -0.059 4.059 4 C -0.120 4.120 5 H 0.104 0.896 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.054 4.054 9 N -0.322 5.322 10 C 0.294 3.706 11 O -0.393 6.393 12 C 0.293 3.707 13 O -0.410 6.410 14 N -0.301 5.301 15 C -0.013 4.013 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.389 6.389 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.533 5.533 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.029 4.029 28 C -0.013 4.013 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.250 -12.460 15.278 19.843 hybrid contribution 1.139 0.364 -1.000 1.559 sum 3.389 -12.095 14.278 19.017 Atomic orbital electron populations 1.81274 1.13076 1.08111 1.08189 1.29195 0.95370 0.93701 0.93628 1.19341 0.81734 1.02544 1.02275 1.21548 0.97342 0.99480 0.93663 0.89550 1.21592 0.93113 1.00311 1.00084 1.22026 1.01547 0.99107 0.94704 1.23019 0.78262 1.05082 0.99062 1.47856 1.09185 1.44687 1.30508 1.20389 0.86919 0.80165 0.83088 1.90734 1.13692 1.60242 1.74587 1.19559 0.86626 0.81262 0.83281 1.90436 1.13500 1.64783 1.72300 1.48709 1.08911 1.43611 1.28849 1.22161 0.79230 0.99762 1.00129 1.22755 0.99284 0.97026 0.96859 1.19686 0.88030 0.83164 0.88296 1.86137 1.43471 1.48035 1.61294 1.21424 1.00740 1.39181 0.96189 0.91428 1.25080 0.95067 0.94552 0.98504 1.69694 1.04474 1.42565 1.36520 0.86440 0.77391 0.79179 0.83783 1.19971 1.21074 1.20001 1.23518 1.01546 0.92627 0.85231 1.21764 1.00197 0.92647 0.86715 0.87072 0.86785 0.91050 0.91089 0.91406 0.90194 0.91463 0.83709 0.91475 0.91392 0.90297 0.90491 0.76960 0.91900 0.88947 0.91317 0.89067 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.56 18.54 42.15 0.78 -4.77 16 2 C 0.20 1.79 14.51 -20.76 -0.30 1.48 16 3 C -0.02 -0.08 5.19 -29.52 -0.15 -0.23 16 4 C -0.10 -0.67 2.31 -90.50 -0.21 -0.88 16 5 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -0.61 5.16 -26.69 -0.14 -0.75 16 7 C -0.14 -1.11 6.10 -26.39 -0.16 -1.27 16 8 C 0.07 0.76 6.01 -3.48 -0.02 0.74 16 9 N -0.59 -7.68 2.97 -173.01 -0.51 -8.19 16 10 C 0.51 8.71 7.69 -11.59 -0.09 8.62 16 11 O -0.52 -9.68 13.61 5.49 0.07 -9.61 16 12 C 0.51 9.92 7.77 -11.59 -0.09 9.83 16 13 O -0.53 -10.68 13.43 5.49 0.07 -10.60 16 14 N -0.57 -11.86 3.33 -171.04 -0.57 -12.42 16 15 C 0.11 2.13 5.49 -3.06 -0.02 2.12 16 16 C -0.12 -2.47 6.15 -24.76 -0.15 -2.62 16 17 C 0.25 5.92 0.87 -89.49 -0.08 5.84 16 18 O -0.58 -14.53 13.16 -35.23 -0.46 -15.00 16 19 C -0.54 -13.68 8.27 -34.44 -0.28 -13.96 16 20 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 22 N -0.89 -23.04 10.69 55.43 0.59 -22.44 16 23 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.09 2.12 5.39 -2.53 -0.01 2.10 16 28 C 0.11 1.09 5.43 -3.71 -0.02 1.07 16 29 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 2.12 4.30 -54.84 -0.24 1.88 16 37 H 0.07 1.22 7.56 -51.93 -0.39 0.83 16 38 H 0.07 1.34 7.73 -51.93 -0.40 0.94 16 39 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.38 9.65 7.56 45.56 0.34 9.99 16 42 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 43 H 0.09 2.34 7.33 -51.93 -0.38 1.96 16 44 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 45 H 0.09 1.13 6.44 -51.93 -0.33 0.80 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -30.78 372.72 -7.26 -38.04 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.01 Total: 10.67 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -1.82 Total: 13.81 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.29 Total: -47.84 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.32 Total: -35.21 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.78 -7.26 -38.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.457 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds