Wall clock time and date at job start Tue Mar 31 2020 18:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46942 * 134.69929 * 3 2 1 5 5 H 1.09000 * 109.52787 * 55.08198 * 4 3 2 6 6 C 1.53045 * 109.49650 * 175.16176 * 4 3 2 7 7 C 1.53037 * 109.53780 * 181.31474 * 6 4 3 8 8 C 1.53626 * 109.24248 * 298.50858 * 7 6 4 9 9 N 1.46927 * 108.53907 * 54.86236 * 8 7 6 10 10 C 1.34775 * 120.63102 * 126.37300 * 9 8 7 11 11 O 1.21355 * 120.00055 * 188.42432 * 10 9 8 12 12 C 1.49445 * 120.00384 * 8.41381 * 10 9 8 13 13 O 1.21360 * 119.99621 * 6.75763 * 12 10 9 14 14 N 1.34776 * 120.00492 * 186.76044 * 12 10 9 15 15 C 1.47015 * 125.64569 * 0.02562 * 14 12 10 16 16 C 1.54331 * 107.40277 * 178.83154 * 15 14 12 17 17 C 1.55401 * 102.82691 * 337.98114 * 16 15 14 18 18 O 1.42899 * 110.92648 * 277.25092 * 17 16 15 19 19 C 1.50703 * 111.03600 * 153.46785 * 17 16 15 20 20 H 1.08000 * 120.00073 * 6.23194 * 19 17 16 21 21 C 1.37875 * 119.99857 * 186.22951 * 19 17 16 22 22 N 1.31512 * 119.99939 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99823 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47169 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.46953 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47026 * 300.00063 * 23 21 19 27 27 C 1.47428 * 125.64756 * 179.97438 * 14 12 10 28 28 C 1.46926 * 118.73842 * 306.08531 * 9 8 7 29 29 H 1.09003 * 109.46795 * 14.69631 * 3 2 1 30 30 H 1.08992 * 109.46713 * 254.69973 * 3 2 1 31 31 H 1.08995 * 109.46069 * 301.33686 * 6 4 3 32 32 H 1.09000 * 109.45773 * 61.29643 * 6 4 3 33 33 H 1.08993 * 109.49837 * 58.58878 * 7 6 4 34 34 H 1.09007 * 109.49828 * 178.65208 * 7 6 4 35 35 H 1.08991 * 109.74181 * 295.12088 * 8 7 6 36 36 H 1.09003 * 109.66342 * 174.55165 * 8 7 6 37 37 H 1.08998 * 109.89088 * 298.32857 * 15 14 12 38 38 H 1.09004 * 109.88332 * 59.34463 * 15 14 12 39 39 H 1.08995 * 110.71608 * 96.25171 * 16 15 14 40 40 H 1.08999 * 110.72074 * 219.52197 * 16 15 14 41 41 H 0.96694 * 113.99942 * 173.70663 * 18 17 16 42 42 H 0.97004 * 120.00071 * 179.97438 * 22 21 19 43 43 H 1.08991 * 110.36839 * 322.99211 * 27 14 12 44 44 H 1.08997 * 110.36626 * 85.32682 * 27 14 12 45 45 H 1.08994 * 109.58789 * 173.65044 * 28 9 8 46 46 H 1.09006 * 109.58764 * 293.93983 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 1.0155 -1.0253 5 1 2.6841 1.9935 -0.8163 6 6 4.6431 1.1044 -0.9415 7 6 5.1511 2.1431 -1.9439 8 6 4.7703 1.7032 -3.3657 9 7 3.3189 1.4795 -3.4125 10 6 2.5587 2.0950 -4.3398 11 8 1.3489 2.0254 -4.2761 12 6 3.2057 2.8633 -5.4463 13 8 4.4113 2.8325 -5.5822 14 7 2.4505 3.5904 -6.2933 15 6 0.9865 3.7160 -6.2434 16 6 0.5656 4.6665 -7.3841 17 6 1.8674 5.4681 -7.6632 18 8 2.0066 6.5520 -6.7424 19 6 1.9029 5.9638 -9.0859 20 1 1.0431 5.8307 -9.7257 21 6 3.0331 6.5872 -9.5707 22 7 4.0799 6.7497 -8.7914 23 14 3.0769 7.2022 -11.3340 24 1 1.9998 8.2045 -11.5356 25 1 4.3945 7.8306 -11.6065 26 1 2.8708 6.0610 -12.2615 27 6 2.9556 4.3924 -7.4225 28 6 2.7128 0.5672 -2.4332 29 1 2.9718 -0.9933 -0.2607 30 1 2.9712 0.2720 0.9912 31 1 4.9348 1.3994 0.0664 32 1 5.0768 0.1320 -1.1749 33 1 4.6986 3.1105 -1.7262 34 1 6.2355 2.2232 -1.8669 35 1 5.2907 0.7791 -3.6170 36 1 5.0428 2.4834 -4.0765 37 1 0.5254 2.7387 -6.3862 38 1 0.6827 4.1323 -5.2829 39 1 0.2649 4.1010 -8.2660 40 1 -0.2358 5.3293 -7.0578 41 1 2.8483 7.0228 -6.8135 42 1 4.8752 7.1880 -9.1325 43 1 3.9028 4.8632 -7.1596 44 1 3.0740 3.7682 -8.3081 45 1 1.6274 0.5975 -2.5284 46 1 3.0670 -0.4482 -2.6116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330447627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:45 Heat of formation + Delta-G solvation = -100.683171 kcal Electronic energy + Delta-G solvation = -29780.711889 eV Core-core repulsion = 25669.892205 eV Total energy + Delta-G solvation = -4110.819684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10773 -40.43692 -39.05120 -38.92268 -37.51533 -36.17474 -34.69822 -34.25163 -32.84028 -31.98493 -29.78316 -28.98790 -27.84215 -26.74552 -24.82067 -23.72423 -23.15437 -21.57412 -21.20055 -20.16651 -19.13762 -18.46181 -18.19051 -18.06518 -17.37767 -17.13134 -16.84612 -16.47207 -16.24975 -15.89103 -15.27147 -15.19598 -14.89137 -14.84394 -14.76424 -14.70200 -14.43451 -14.12703 -14.02869 -13.71038 -13.57113 -13.50214 -13.33268 -13.09907 -12.82883 -12.64880 -12.58283 -12.38010 -12.28725 -12.25000 -12.12836 -11.94732 -11.72294 -11.57901 -11.45531 -11.19962 -10.67468 -10.39698 -10.23361 -9.81843 -9.60274 -8.25759 -6.42507 0.29788 1.21284 1.45043 1.46119 1.53660 1.83797 1.89609 2.05872 2.33161 2.41855 2.99744 3.08811 3.13863 3.73053 3.77933 3.83439 3.94747 4.01818 4.12032 4.15554 4.27045 4.32773 4.38893 4.56119 4.62196 4.69829 4.72012 4.78188 4.87862 4.89299 4.97420 5.02032 5.02207 5.05894 5.19124 5.21237 5.29493 5.35445 5.40345 5.47186 5.54036 5.73205 5.96441 6.04254 6.29360 6.58204 6.66419 6.69134 6.89035 7.25874 7.34143 8.79854 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002784 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.159039 B =10055.982416 C =10835.674282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.227 3.773 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.064 0.936 6 C -0.104 4.104 7 C -0.133 4.133 8 C 0.062 3.938 9 N -0.575 5.575 10 C 0.508 3.492 11 O -0.542 6.542 12 C 0.503 3.497 13 O -0.541 6.541 14 N -0.582 5.582 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.234 3.766 18 O -0.588 6.588 19 C -0.558 4.558 20 H 0.068 0.932 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.108 3.892 28 C 0.101 3.899 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.375 0.625 42 H 0.271 0.729 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -14.180 16.807 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.090 4.090 3 C -0.051 4.051 4 C -0.113 4.113 5 H 0.083 0.917 6 C -0.141 4.141 7 C -0.171 4.171 8 C -0.059 4.059 9 N -0.307 5.307 10 C 0.291 3.709 11 O -0.420 6.420 12 C 0.287 3.713 13 O -0.422 6.422 14 N -0.313 5.313 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.194 3.806 18 O -0.396 6.396 19 C -0.596 4.596 20 H 0.086 0.914 21 C -0.171 4.171 22 N -0.551 5.551 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.014 4.014 28 C -0.020 4.020 29 H 0.168 0.832 30 H 0.172 0.828 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.699 -14.418 17.016 22.607 hybrid contribution 0.828 0.942 -1.479 1.939 sum 4.526 -13.476 15.537 21.059 Atomic orbital electron populations 1.81300 1.15858 1.10893 1.10972 1.30161 0.96309 0.91284 0.91212 1.19722 0.78160 1.03739 1.03436 1.21484 0.98727 0.99173 0.91937 0.91725 1.21597 0.91259 1.00604 1.00652 1.22020 1.02713 0.99195 0.93138 1.23042 0.77155 1.04945 1.00733 1.48019 1.09830 1.43477 1.29416 1.19930 0.86776 0.80783 0.83457 1.90720 1.14356 1.61606 1.75356 1.20203 0.86577 0.80898 0.83617 1.90466 1.14052 1.64978 1.72670 1.48739 1.09471 1.44244 1.28879 1.22097 0.78539 1.00153 0.99431 1.22762 0.97869 0.96888 0.97794 1.19893 0.89929 0.83067 0.87715 1.86130 1.43092 1.48558 1.61781 1.21703 1.01006 1.39773 0.97080 0.91371 1.25785 0.94744 0.94660 1.01954 1.69800 1.04734 1.42760 1.37825 0.85505 0.77258 0.78636 0.79609 1.19786 1.20875 1.19489 1.23052 1.00159 0.92532 0.85659 1.22144 0.98570 0.93486 0.87834 0.83249 0.82782 0.88037 0.88381 0.93359 0.88269 0.89264 0.87343 0.90100 0.91905 0.88948 0.89815 0.77643 0.91939 0.91821 0.92543 0.91940 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.23 18.54 20.01 0.37 -12.85 16 2 C 0.23 3.62 14.51 89.45 1.30 4.92 16 3 C -0.01 -0.04 5.19 28.79 0.15 0.11 16 4 C -0.09 -0.91 2.31 -10.71 -0.02 -0.93 16 5 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 6 C -0.10 -0.57 5.16 30.62 0.16 -0.41 16 7 C -0.13 -1.78 6.10 30.82 0.19 -1.59 16 8 C 0.06 1.31 6.01 86.51 0.52 1.83 16 9 N -0.57 -14.45 2.97 -819.63 -2.43 -16.88 16 10 C 0.51 17.59 7.69 87.27 0.67 18.26 16 11 O -0.54 -20.73 13.61 -3.26 -0.04 -20.78 16 12 C 0.50 20.23 7.77 87.27 0.68 20.91 16 13 O -0.54 -22.62 13.43 -3.28 -0.04 -22.67 16 14 N -0.58 -25.05 3.33 -813.39 -2.71 -27.75 16 15 C 0.12 4.74 5.49 86.73 0.48 5.22 16 16 C -0.12 -4.73 6.15 31.87 0.20 -4.54 16 17 C 0.23 11.44 0.87 -10.06 -0.01 11.43 16 18 O -0.59 -30.38 13.16 -148.98 -1.96 -32.34 16 19 C -0.56 -28.83 8.27 25.60 0.21 -28.62 16 20 H 0.07 3.43 7.79 -2.91 -0.02 3.41 16 21 C 0.03 1.54 5.29 84.65 0.45 1.99 16 22 N -0.91 -48.18 10.69 21.45 0.23 -47.95 16 23 Si 0.96 41.06 29.54 68.60 2.03 43.09 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.11 5.21 5.39 86.85 0.47 5.68 16 28 C 0.10 1.77 5.43 86.36 0.47 2.24 16 29 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 3.21 4.30 -48.53 -0.21 3.00 16 37 H 0.08 2.96 7.56 -2.39 -0.02 2.95 16 38 H 0.06 2.53 7.73 -2.38 -0.02 2.51 16 39 H 0.09 3.50 8.03 -2.39 -0.02 3.48 16 40 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.37 19.85 7.56 -74.06 -0.56 19.29 16 42 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.06 3.40 7.33 -2.39 -0.02 3.39 16 44 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 45 H 0.06 1.51 6.44 -2.39 -0.02 1.50 16 46 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -72.48 372.72 1.60 -70.89 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.26 Total: 30.76 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 5.90 Total: 36.49 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.54 Total: -105.44 kcal Atomic # 8 Polarization: -73.73 SS G_CDS: -2.05 Total: -75.78 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.48 1.60 -70.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.797 kcal (2) G-P(sol) polarization free energy of solvation -72.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds