Wall clock time and date at job start Tue Mar 31 2020 18:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47399 * 42.43129 * 3 2 1 5 5 H 1.09005 * 109.49781 * 305.06846 * 4 3 2 6 6 C 1.53043 * 109.50059 * 185.00025 * 4 3 2 7 7 C 1.53037 * 109.52658 * 178.65746 * 6 4 3 8 8 C 1.53162 * 109.32766 * 61.37187 * 7 6 4 9 9 N 1.46919 * 108.77087 * 305.35012 * 8 7 6 10 10 C 1.34779 * 120.63321 * 233.58929 * 9 8 7 11 11 O 1.21355 * 119.99458 * 172.67552 * 10 9 8 12 12 C 1.49448 * 119.99999 * 352.67999 * 10 9 8 13 13 O 1.21350 * 119.99800 * 353.37584 * 12 10 9 14 14 N 1.34771 * 119.99861 * 173.37901 * 12 10 9 15 15 C 1.47029 * 125.64748 * 359.68806 * 14 12 10 16 16 C 1.54335 * 107.26123 * 178.85054 * 15 14 12 17 17 C 1.55154 * 103.02496 * 338.14394 * 16 15 14 18 18 O 1.42909 * 111.00248 * 277.23232 * 17 16 15 19 19 C 1.50695 * 111.03946 * 153.39835 * 17 16 15 20 20 H 1.08006 * 119.99817 * 276.16130 * 19 17 16 21 21 C 1.37875 * 120.00269 * 96.16217 * 19 17 16 22 22 N 1.31517 * 120.00279 * 165.29428 * 21 19 17 23 23 Si 1.86798 * 120.00088 * 345.29062 * 21 19 17 24 24 H 1.48503 * 109.46941 * 84.64406 * 23 21 19 25 25 H 1.48500 * 109.47524 * 204.64290 * 23 21 19 26 26 H 1.48500 * 109.47231 * 324.64896 * 23 21 19 27 27 C 1.47428 * 125.65012 * 179.97438 * 14 12 10 28 28 C 1.46932 * 118.73751 * 53.60983 * 9 8 7 29 29 H 1.09001 * 109.47007 * 282.42971 * 3 2 1 30 30 H 1.09001 * 109.46725 * 162.42973 * 3 2 1 31 31 H 1.09004 * 109.45545 * 298.66922 * 6 4 3 32 32 H 1.08997 * 109.45913 * 58.64071 * 6 4 3 33 33 H 1.09001 * 109.49446 * 181.30888 * 7 6 4 34 34 H 1.08996 * 109.50037 * 301.40458 * 7 6 4 35 35 H 1.09006 * 109.58785 * 185.56522 * 8 7 6 36 36 H 1.09002 * 109.71203 * 65.21515 * 8 7 6 37 37 H 1.08994 * 109.88152 * 298.39485 * 15 14 12 38 38 H 1.09002 * 109.87900 * 59.56393 * 15 14 12 39 39 H 1.09003 * 110.84742 * 219.67372 * 16 15 14 40 40 H 1.09006 * 110.66720 * 96.52494 * 16 15 14 41 41 H 0.96700 * 113.99741 * 177.02313 * 18 17 16 42 42 H 0.96993 * 120.00600 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.36544 * 322.92997 * 27 14 12 44 44 H 1.08996 * 110.36275 * 85.25116 * 27 14 12 45 45 H 1.08996 * 109.59023 * 186.60092 * 28 9 8 46 46 H 1.09005 * 109.58343 * 66.18083 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0637 -0.9732 5 1 2.6837 -2.0298 -0.7167 6 6 4.6439 -1.1498 -0.8821 7 6 5.1524 -2.2375 -1.8309 8 6 4.7741 -1.8727 -3.2695 9 7 3.3239 -1.6461 -3.3340 10 6 2.5648 -2.3063 -4.2310 11 8 1.3557 -2.2127 -4.1882 12 6 3.2123 -3.1537 -5.2780 13 8 4.4199 -3.1533 -5.3975 14 7 2.4550 -3.9181 -6.0894 15 6 0.9886 -4.0180 -6.0499 16 6 0.5648 -4.9834 -7.1770 17 6 1.7752 -4.9414 -8.1468 18 8 1.6943 -3.8116 -9.0182 19 6 1.8814 -6.2213 -8.9352 20 1 2.3814 -7.0784 -8.5086 21 6 1.3404 -6.2983 -10.2010 22 7 1.6721 -7.2897 -10.9989 23 14 0.1360 -4.9943 -10.7829 24 1 0.8870 -3.8316 -11.3208 25 1 -0.7299 -5.5602 -11.8484 26 1 -0.7066 -4.5543 -9.6419 27 6 2.9600 -4.7971 -7.1599 28 6 2.7168 -0.6857 -2.4024 29 1 2.9715 -0.2204 1.0036 30 1 2.9709 0.9806 -0.3102 31 1 5.0790 -0.1906 -1.1627 32 1 4.9333 -1.3948 0.1397 33 1 6.2366 -2.3143 -1.7485 34 1 4.6985 -3.1924 -1.5663 35 1 5.0463 -2.6900 -3.9375 36 1 5.2994 -0.9658 -3.5692 37 1 0.6697 -4.4098 -5.0841 38 1 0.5455 -3.0366 -6.2189 39 1 -0.3389 -4.6285 -7.6724 40 1 0.4186 -5.9905 -6.7862 41 1 2.4519 -3.7178 -9.6118 42 1 1.2913 -7.3441 -11.8893 43 1 3.8141 -4.3372 -7.6570 44 1 3.2354 -5.7701 -6.7532 45 1 1.6316 -0.7197 -2.4981 46 1 3.0743 0.3189 -2.6288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330447628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:49 Heat of formation + Delta-G solvation = -70.999737 kcal Electronic energy + Delta-G solvation = -29695.748045 eV Core-core repulsion = 25586.215531 eV Total energy + Delta-G solvation = -4109.532514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99647 -39.38513 -38.08878 -37.68146 -36.75424 -34.98454 -33.91212 -32.41469 -32.23835 -30.53153 -28.63459 -28.26091 -26.70977 -25.43679 -23.32623 -23.07085 -21.97961 -20.56829 -19.87482 -19.16029 -17.86754 -17.63993 -17.02062 -16.97483 -16.21015 -15.85302 -15.76991 -15.26775 -14.90666 -14.72457 -14.44546 -14.37555 -14.21120 -13.94326 -13.70306 -13.42933 -13.21453 -13.09207 -12.82157 -12.74093 -12.58471 -12.46910 -12.12045 -11.92081 -11.75327 -11.58965 -11.52364 -11.44501 -11.28262 -11.00480 -10.94251 -10.63253 -10.49518 -10.35639 -10.23461 -9.41588 -9.08086 -8.91849 -8.80009 -8.49307 -8.25086 -6.28276 -4.36243 1.53800 2.29038 2.44894 2.48593 3.29286 3.41552 3.48032 3.49489 3.55367 3.63275 4.20333 4.27831 4.32148 4.43026 4.47278 4.69771 4.84748 4.92869 4.92941 5.02739 5.09720 5.11666 5.24164 5.27867 5.36078 5.43756 5.56529 5.61068 5.67764 5.68967 5.72644 5.87349 5.97764 5.99678 6.13013 6.20382 6.36404 6.46837 6.63857 6.75409 6.99286 7.00958 7.24891 7.36418 7.54607 7.78561 8.04595 8.14362 8.58214 8.75805 9.34796 10.80595 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002796 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.376839 B =10011.300141 C =10847.906865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.198 3.802 3 C -0.018 4.018 4 C -0.099 4.099 5 H 0.086 0.914 6 C -0.114 4.114 7 C -0.135 4.135 8 C 0.063 3.937 9 N -0.587 5.587 10 C 0.511 3.489 11 O -0.514 6.514 12 C 0.514 3.486 13 O -0.529 6.529 14 N -0.570 5.570 15 C 0.106 3.894 16 C -0.127 4.127 17 C 0.221 3.779 18 O -0.560 6.560 19 C -0.558 4.558 20 H 0.082 0.918 21 C 0.077 3.923 22 N -0.880 5.880 23 Si 0.943 3.057 24 H -0.288 1.288 25 H -0.323 1.323 26 H -0.272 1.272 27 C 0.087 3.913 28 C 0.109 3.891 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.375 0.625 42 H 0.268 0.732 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 13.340 20.592 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.120 4.120 3 C -0.059 4.059 4 C -0.120 4.120 5 H 0.104 0.896 6 C -0.152 4.152 7 C -0.173 4.173 8 C -0.058 4.058 9 N -0.321 5.321 10 C 0.294 3.706 11 O -0.389 6.389 12 C 0.298 3.702 13 O -0.410 6.410 14 N -0.301 5.301 15 C -0.016 4.016 16 C -0.165 4.165 17 C 0.180 3.820 18 O -0.368 6.368 19 C -0.595 4.595 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.514 5.514 23 Si 0.777 3.223 24 H -0.215 1.215 25 H -0.254 1.254 26 H -0.198 1.198 27 C -0.035 4.035 28 C -0.014 4.014 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.223 0.777 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.961 13.402 20.729 25.394 hybrid contribution 0.336 0.575 -0.515 0.842 sum 6.297 13.978 20.214 25.370 Atomic orbital electron populations 1.81285 1.13065 1.08023 1.08147 1.29189 0.95362 0.93761 0.93684 1.19336 0.81755 1.02178 1.02625 1.21544 0.97322 0.99189 0.93946 0.89592 1.21599 0.93128 1.00080 1.00365 1.21937 1.01585 0.98926 0.94855 1.22976 0.78329 1.05797 0.98654 1.47855 1.09250 1.41318 1.33667 1.20242 0.86920 0.80930 0.82545 1.90761 1.13605 1.62425 1.72068 1.19594 0.86529 0.81157 0.82952 1.90412 1.13424 1.66903 1.70242 1.48499 1.09051 1.40482 1.32072 1.22302 0.78517 1.01192 0.99622 1.23063 1.00143 0.98815 0.94464 1.20212 0.89504 0.85611 0.86674 1.86134 1.47626 1.49859 1.53146 1.21051 1.40513 0.97338 1.00576 0.89951 1.25081 0.95600 0.96362 0.95813 1.69996 1.41066 1.32589 1.07734 0.85845 0.80212 0.79499 0.76765 1.21543 1.25367 1.19775 1.23349 0.99667 0.92806 0.87656 1.21790 1.00254 0.91958 0.87370 0.86749 0.87038 0.91024 0.90987 0.90138 0.91487 0.83613 0.91413 0.91579 0.90705 0.89951 0.89566 0.77698 0.92249 0.90497 0.90168 0.88966 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.30 18.54 42.15 0.78 -4.52 16 2 C 0.20 1.64 14.52 -20.76 -0.30 1.34 16 3 C -0.02 -0.06 5.19 -29.52 -0.15 -0.22 16 4 C -0.10 -0.56 2.31 -90.50 -0.21 -0.77 16 5 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.11 -0.48 5.17 -26.69 -0.14 -0.62 16 7 C -0.13 -0.89 6.08 -26.63 -0.16 -1.05 16 8 C 0.06 0.62 6.02 -3.73 -0.02 0.59 16 9 N -0.59 -6.82 2.97 -173.29 -0.52 -7.34 16 10 C 0.51 7.88 7.69 -11.58 -0.09 7.79 16 11 O -0.51 -8.99 13.60 5.49 0.07 -8.92 16 12 C 0.51 8.78 7.78 -11.59 -0.09 8.69 16 13 O -0.53 -9.20 13.40 5.50 0.07 -9.13 16 14 N -0.57 -10.40 3.33 -171.03 -0.57 -10.97 16 15 C 0.11 1.91 5.51 -3.05 -0.02 1.89 16 16 C -0.13 -2.51 5.89 -24.89 -0.15 -2.65 16 17 C 0.22 4.76 0.70 -89.64 -0.06 4.70 16 18 O -0.56 -12.10 8.98 -35.23 -0.32 -12.41 16 19 C -0.56 -14.24 8.82 -34.44 -0.30 -14.54 16 20 H 0.08 2.27 8.01 -52.48 -0.42 1.85 16 21 C 0.08 2.08 5.43 -17.82 -0.10 1.99 16 22 N -0.88 -25.28 13.96 55.43 0.77 -24.50 16 23 Si 0.94 22.72 24.85 -169.99 -4.22 18.50 16 24 H -0.29 -6.79 6.97 56.52 0.39 -6.40 16 25 H -0.32 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.27 -6.50 5.69 56.52 0.32 -6.18 16 27 C 0.09 1.68 6.10 -2.54 -0.02 1.66 16 28 C 0.11 0.97 5.44 -3.71 -0.02 0.95 16 29 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.15 1.82 4.23 -55.23 -0.23 1.58 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 38 H 0.07 1.40 7.43 -51.93 -0.39 1.01 16 39 H 0.08 1.69 6.65 -51.93 -0.35 1.34 16 40 H 0.09 1.64 8.03 -51.93 -0.42 1.22 16 41 H 0.37 7.32 8.74 45.56 0.40 7.72 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 44 H 0.08 1.55 7.99 -51.93 -0.42 1.13 16 45 H 0.09 1.06 6.45 -51.93 -0.33 0.73 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.12 367.03 -6.22 -39.34 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.01 Total: 4.66 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.83 Total: 9.75 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.47 Total: -47.33 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.17 Total: -30.46 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.22 Total: 18.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.12 -6.22 -39.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.660 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds