Wall clock time and date at job start Tue Mar 31 2020 18:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47399 * 42.43129 * 3 2 1 5 5 H 1.09005 * 109.49781 * 305.06846 * 4 3 2 6 6 C 1.53043 * 109.50059 * 185.00025 * 4 3 2 7 7 C 1.53037 * 109.52658 * 178.65746 * 6 4 3 8 8 C 1.53162 * 109.32766 * 61.37187 * 7 6 4 9 9 N 1.46919 * 108.77087 * 305.35012 * 8 7 6 10 10 C 1.34779 * 120.63321 * 233.58929 * 9 8 7 11 11 O 1.21355 * 119.99458 * 172.67552 * 10 9 8 12 12 C 1.49448 * 119.99999 * 352.67999 * 10 9 8 13 13 O 1.21350 * 119.99800 * 353.37584 * 12 10 9 14 14 N 1.34771 * 119.99861 * 173.37901 * 12 10 9 15 15 C 1.47029 * 125.64748 * 359.68806 * 14 12 10 16 16 C 1.54335 * 107.26123 * 178.85054 * 15 14 12 17 17 C 1.55154 * 103.02496 * 338.14394 * 16 15 14 18 18 O 1.42909 * 111.00248 * 277.23232 * 17 16 15 19 19 C 1.50695 * 111.03946 * 153.39835 * 17 16 15 20 20 H 1.08006 * 119.99817 * 276.16130 * 19 17 16 21 21 C 1.37875 * 120.00269 * 96.16217 * 19 17 16 22 22 N 1.31517 * 120.00279 * 165.29428 * 21 19 17 23 23 Si 1.86798 * 120.00088 * 345.29062 * 21 19 17 24 24 H 1.48503 * 109.46941 * 84.64406 * 23 21 19 25 25 H 1.48500 * 109.47524 * 204.64290 * 23 21 19 26 26 H 1.48500 * 109.47231 * 324.64896 * 23 21 19 27 27 C 1.47428 * 125.65012 * 179.97438 * 14 12 10 28 28 C 1.46932 * 118.73751 * 53.60983 * 9 8 7 29 29 H 1.09001 * 109.47007 * 282.42971 * 3 2 1 30 30 H 1.09001 * 109.46725 * 162.42973 * 3 2 1 31 31 H 1.09004 * 109.45545 * 298.66922 * 6 4 3 32 32 H 1.08997 * 109.45913 * 58.64071 * 6 4 3 33 33 H 1.09001 * 109.49446 * 181.30888 * 7 6 4 34 34 H 1.08996 * 109.50037 * 301.40458 * 7 6 4 35 35 H 1.09006 * 109.58785 * 185.56522 * 8 7 6 36 36 H 1.09002 * 109.71203 * 65.21515 * 8 7 6 37 37 H 1.08994 * 109.88152 * 298.39485 * 15 14 12 38 38 H 1.09002 * 109.87900 * 59.56393 * 15 14 12 39 39 H 1.09003 * 110.84742 * 219.67372 * 16 15 14 40 40 H 1.09006 * 110.66720 * 96.52494 * 16 15 14 41 41 H 0.96700 * 113.99741 * 177.02313 * 18 17 16 42 42 H 0.96993 * 120.00600 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.36544 * 322.92997 * 27 14 12 44 44 H 1.08996 * 110.36275 * 85.25116 * 27 14 12 45 45 H 1.08996 * 109.59023 * 186.60092 * 28 9 8 46 46 H 1.09005 * 109.58343 * 66.18083 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0637 -0.9732 5 1 2.6837 -2.0298 -0.7167 6 6 4.6439 -1.1498 -0.8821 7 6 5.1524 -2.2375 -1.8309 8 6 4.7741 -1.8727 -3.2695 9 7 3.3239 -1.6461 -3.3340 10 6 2.5648 -2.3063 -4.2310 11 8 1.3557 -2.2127 -4.1882 12 6 3.2123 -3.1537 -5.2780 13 8 4.4199 -3.1533 -5.3975 14 7 2.4550 -3.9181 -6.0894 15 6 0.9886 -4.0180 -6.0499 16 6 0.5648 -4.9834 -7.1770 17 6 1.7752 -4.9414 -8.1468 18 8 1.6943 -3.8116 -9.0182 19 6 1.8814 -6.2213 -8.9352 20 1 2.3814 -7.0784 -8.5086 21 6 1.3404 -6.2983 -10.2010 22 7 1.6721 -7.2897 -10.9989 23 14 0.1360 -4.9943 -10.7829 24 1 0.8870 -3.8316 -11.3208 25 1 -0.7299 -5.5602 -11.8484 26 1 -0.7066 -4.5543 -9.6419 27 6 2.9600 -4.7971 -7.1599 28 6 2.7168 -0.6857 -2.4024 29 1 2.9715 -0.2204 1.0036 30 1 2.9709 0.9806 -0.3102 31 1 5.0790 -0.1906 -1.1627 32 1 4.9333 -1.3948 0.1397 33 1 6.2366 -2.3143 -1.7485 34 1 4.6985 -3.1924 -1.5663 35 1 5.0463 -2.6900 -3.9375 36 1 5.2994 -0.9658 -3.5692 37 1 0.6697 -4.4098 -5.0841 38 1 0.5455 -3.0366 -6.2189 39 1 -0.3389 -4.6285 -7.6724 40 1 0.4186 -5.9905 -6.7862 41 1 2.4519 -3.7178 -9.6118 42 1 1.2913 -7.3441 -11.8893 43 1 3.8141 -4.3372 -7.6570 44 1 3.2354 -5.7701 -6.7532 45 1 1.6316 -0.7197 -2.4981 46 1 3.0743 0.3189 -2.6288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330447628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:48 Heat of formation + Delta-G solvation = -96.126911 kcal Electronic energy + Delta-G solvation = -29696.837641 eV Core-core repulsion = 25586.215531 eV Total energy + Delta-G solvation = -4110.622110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15991 -40.57034 -39.23770 -38.95302 -37.55074 -36.50805 -34.71878 -34.46233 -32.85588 -32.13404 -30.13980 -29.03765 -27.93879 -26.77730 -24.69973 -23.72521 -23.21670 -21.65816 -21.24008 -20.26722 -19.49414 -18.49664 -18.22960 -18.05421 -17.46582 -17.19888 -16.93798 -16.55052 -16.49928 -15.90624 -15.47730 -15.20958 -15.15093 -14.86733 -14.78686 -14.60510 -14.46899 -14.19954 -14.10467 -14.00324 -13.73237 -13.54884 -13.32953 -13.28424 -13.11511 -12.80627 -12.61198 -12.31241 -12.29182 -12.17994 -12.02372 -11.94198 -11.71579 -11.54723 -11.45046 -11.36948 -10.69652 -10.46346 -10.20546 -9.87240 -9.67264 -8.38621 -6.47138 0.27320 1.16178 1.48251 1.51788 1.69498 1.83085 1.88839 2.03025 2.30416 2.41717 2.90732 3.06497 3.12395 3.44196 3.77420 3.77704 3.83731 3.94238 4.02324 4.17583 4.19454 4.33261 4.36268 4.39233 4.55078 4.63090 4.72143 4.74981 4.78801 4.86905 4.87726 4.93532 5.00762 5.02616 5.14859 5.17467 5.21621 5.29964 5.36095 5.42393 5.49712 5.54594 5.96136 6.02206 6.21243 6.54182 6.58538 6.68484 6.85820 6.90112 7.27719 8.74215 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002796 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.376839 B =10011.300141 C =10847.906865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.227 3.773 3 C -0.012 4.012 4 C -0.091 4.091 5 H 0.067 0.933 6 C -0.106 4.106 7 C -0.132 4.132 8 C 0.059 3.941 9 N -0.574 5.574 10 C 0.505 3.495 11 O -0.544 6.544 12 C 0.512 3.488 13 O -0.533 6.533 14 N -0.579 5.579 15 C 0.120 3.880 16 C -0.124 4.124 17 C 0.217 3.783 18 O -0.562 6.562 19 C -0.551 4.551 20 H 0.053 0.947 21 C 0.034 3.966 22 N -0.925 5.925 23 Si 0.995 3.005 24 H -0.277 1.277 25 H -0.333 1.333 26 H -0.267 1.267 27 C 0.097 3.903 28 C 0.100 3.900 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.383 0.617 42 H 0.269 0.731 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 16.072 23.339 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.090 4.090 3 C -0.052 4.052 4 C -0.112 4.112 5 H 0.085 0.915 6 C -0.143 4.143 7 C -0.170 4.170 8 C -0.062 4.062 9 N -0.307 5.307 10 C 0.288 3.712 11 O -0.422 6.422 12 C 0.296 3.704 13 O -0.414 6.414 14 N -0.311 5.311 15 C -0.002 4.002 16 C -0.162 4.162 17 C 0.177 3.823 18 O -0.371 6.371 19 C -0.588 4.588 20 H 0.071 0.929 21 C -0.167 4.167 22 N -0.562 5.562 23 Si 0.828 3.172 24 H -0.204 1.204 25 H -0.265 1.265 26 H -0.193 1.193 27 C -0.025 4.025 28 C -0.021 4.021 29 H 0.172 0.828 30 H 0.166 0.834 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.877 16.171 23.525 29.614 hybrid contribution -0.061 -0.284 -1.296 1.328 sum 7.816 15.887 22.229 28.418 Atomic orbital electron populations 1.81311 1.15901 1.10855 1.11029 1.30174 0.96317 0.91290 0.91196 1.19732 0.78119 1.03171 1.04149 1.21477 0.98764 0.99053 0.91905 0.91480 1.21606 0.91204 1.00211 1.01267 1.21931 1.02759 0.99240 0.93042 1.23028 0.77029 1.05514 1.00588 1.48035 1.09993 1.40210 1.32439 1.19964 0.86753 0.81446 0.83060 1.90749 1.14540 1.63825 1.73061 1.20040 0.86482 0.80826 0.83021 1.90450 1.13629 1.66887 1.70396 1.48484 1.09072 1.41146 1.32367 1.22129 0.78441 1.00306 0.99335 1.22991 0.98999 0.99668 0.94583 1.20111 0.91475 0.83929 0.86821 1.86104 1.48299 1.49312 1.53412 1.21243 1.38873 0.98125 1.00579 0.92903 1.25720 0.96907 0.97892 0.96192 1.70091 1.42948 1.34788 1.08387 0.84979 0.78445 0.77663 0.76103 1.20385 1.26474 1.19281 1.23014 0.98581 0.93155 0.87710 1.22124 0.98530 0.92561 0.88902 0.82782 0.83444 0.88637 0.88105 0.88211 0.93006 0.86526 0.89579 0.90399 0.91239 0.90452 0.89147 0.76760 0.92217 0.90486 0.90486 0.92034 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.67 18.54 20.01 0.37 -12.30 16 2 C 0.23 3.32 14.52 89.44 1.30 4.62 16 3 C -0.01 -0.02 5.19 28.79 0.15 0.13 16 4 C -0.09 -0.68 2.31 -10.72 -0.02 -0.71 16 5 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 6 C -0.11 -0.31 5.17 30.62 0.16 -0.15 16 7 C -0.13 -1.27 6.08 30.66 0.19 -1.08 16 8 C 0.06 1.00 6.02 86.35 0.52 1.52 16 9 N -0.57 -12.38 2.97 -820.52 -2.44 -14.82 16 10 C 0.51 15.37 7.69 87.27 0.67 16.04 16 11 O -0.54 -19.12 13.60 -3.26 -0.04 -19.16 16 12 C 0.51 17.31 7.78 87.27 0.68 17.99 16 13 O -0.53 -18.29 13.40 -3.25 -0.04 -18.33 16 14 N -0.58 -20.99 3.33 -813.39 -2.71 -23.70 16 15 C 0.12 4.29 5.51 86.73 0.48 4.76 16 16 C -0.12 -4.88 5.89 31.79 0.19 -4.69 16 17 C 0.22 9.38 0.70 -10.16 -0.01 9.37 16 18 O -0.56 -23.82 8.98 -148.98 -1.34 -25.15 16 19 C -0.55 -28.64 8.82 25.60 0.23 -28.41 16 20 H 0.05 3.02 8.01 -2.91 -0.02 2.99 16 21 C 0.03 1.87 5.43 84.65 0.46 2.33 16 22 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 23 Si 1.00 46.98 24.85 68.60 1.70 48.68 16 24 H -0.28 -12.48 6.97 99.48 0.69 -11.79 16 25 H -0.33 -16.20 7.11 99.48 0.71 -15.49 16 26 H -0.27 -12.32 5.69 99.48 0.57 -11.76 16 27 C 0.10 3.79 6.10 86.85 0.53 4.32 16 28 C 0.10 1.53 5.44 86.36 0.47 2.00 16 29 H 0.15 -0.73 8.14 -2.39 -0.02 -0.74 16 30 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 2.76 4.23 -54.76 -0.23 2.53 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 2.59 7.85 -2.39 -0.02 2.57 16 38 H 0.07 2.57 7.43 -2.39 -0.02 2.56 16 39 H 0.08 3.12 6.65 -2.39 -0.02 3.10 16 40 H 0.09 3.44 8.03 -2.38 -0.02 3.42 16 41 H 0.38 14.63 8.74 -74.06 -0.65 13.98 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 44 H 0.08 3.02 7.99 -2.39 -0.02 3.00 16 45 H 0.06 1.37 6.45 -2.39 -0.02 1.36 16 46 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -76.48 367.03 1.78 -74.70 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.01 Total: 16.26 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 5.98 Total: 28.03 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.47 Total: -105.02 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -1.43 Total: -62.65 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.70 Total: 48.68 kcal Total: -76.48 1.78 -74.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.424 kcal (2) G-P(sol) polarization free energy of solvation -76.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds