Wall clock time and date at job start Tue Mar 31 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46871 * 35.00433 * 14 13 12 16 16 C 1.52994 * 109.47113 * 275.00325 * 14 13 12 17 17 O 1.42902 * 109.47338 * 294.99847 * 16 14 13 18 18 C 1.53002 * 109.47092 * 155.00227 * 14 13 12 19 19 N 1.46504 * 109.47066 * 304.99917 * 18 14 13 20 20 C 1.34771 * 120.00168 * 179.97438 * 19 18 14 21 21 O 1.21289 * 119.99722 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.99997 * 180.02562 * 20 19 18 23 23 C 1.50703 * 109.46871 * 180.02562 * 22 20 19 24 24 C 1.38237 * 120.00142 * 269.72521 * 23 22 20 25 25 C 1.38231 * 120.00344 * 179.76712 * 24 23 22 26 26 C 1.38242 * 119.99750 * 0.50544 * 25 24 23 27 27 C 1.38235 * 119.99975 * 359.75358 * 26 25 24 28 28 C 1.38237 * 120.00145 * 90.00407 * 23 22 20 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.00898 * 110.99877 * 56.04636 * 13 12 10 34 34 H 1.08998 * 109.47596 * 55.00036 * 16 14 13 35 35 H 1.09007 * 109.47272 * 175.00278 * 16 14 13 36 36 H 0.96703 * 114.00717 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46986 * 65.00067 * 18 14 13 38 38 H 1.08994 * 109.46981 * 185.00297 * 18 14 13 39 39 H 0.97000 * 119.99510 * 0.02562 * 19 18 14 40 40 H 1.09000 * 109.47328 * 299.99894 * 22 20 19 41 41 H 1.08997 * 109.47563 * 60.00601 * 22 20 19 42 42 H 1.08003 * 119.99644 * 0.02562 * 24 23 22 43 43 H 1.08000 * 120.00388 * 180.23009 * 25 24 23 44 44 H 1.07998 * 120.00110 * 179.72150 * 26 25 24 45 45 H 1.07997 * 120.00048 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.99769 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5850 -7.1888 -0.5908 16 6 1.1452 -7.6594 1.4354 17 8 2.3459 -7.8805 2.1780 18 6 2.4043 -8.3423 -0.6116 19 7 2.8392 -7.9136 -1.9434 20 6 3.6502 -8.7038 -2.6742 21 8 4.0204 -9.7697 -2.2292 22 6 4.0980 -8.2626 -4.0438 23 6 4.9903 -9.3180 -4.6447 24 6 6.3565 -9.2661 -4.4407 25 6 7.1745 -10.2369 -4.9879 26 6 6.6273 -11.2538 -5.7479 27 6 5.2616 -11.3027 -5.9563 28 6 4.4431 -10.3348 -5.4048 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.8335 -5.9126 0.7798 34 1 0.5740 -6.8553 1.8994 35 1 0.5488 -8.5718 1.4290 36 1 2.1977 -8.1306 3.1003 37 1 3.2762 -8.4870 0.0263 38 1 1.8542 -9.2796 -0.6934 39 1 2.5440 -7.0607 -2.2987 40 1 3.2263 -8.1179 -4.6820 41 1 4.6480 -7.3252 -3.9618 42 1 6.7844 -8.4694 -3.8503 43 1 8.2415 -10.1984 -4.8254 44 1 7.2668 -12.0097 -6.1791 45 1 4.8342 -12.0969 -6.5504 46 1 3.3762 -10.3731 -5.5675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331738327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:16 Heat of formation + Delta-G solvation = -100.104633 kcal Electronic energy + Delta-G solvation = -27825.853381 eV Core-core repulsion = 23715.058785 eV Total energy + Delta-G solvation = -4110.794597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04073 -39.00134 -38.42683 -37.62536 -35.44376 -34.12057 -33.59715 -32.94470 -31.28167 -30.97550 -30.18267 -27.92907 -26.21528 -25.41704 -23.93695 -22.67353 -21.83063 -20.90254 -20.09590 -19.35701 -18.02295 -17.63219 -17.11035 -16.82578 -16.42344 -15.78383 -15.64291 -15.50643 -15.14215 -14.90860 -14.66151 -14.40803 -14.29347 -13.84327 -13.72713 -13.56348 -13.46540 -13.22972 -13.10918 -12.50826 -12.47516 -12.20123 -11.97750 -11.80020 -11.62590 -11.50087 -11.30151 -11.20918 -11.09054 -11.07202 -10.42447 -10.26249 -10.19802 -9.83497 -9.54706 -8.98949 -8.88557 -8.80041 -8.53146 -8.14427 -8.00189 -6.45732 -3.86563 1.24489 1.33582 2.75650 3.15136 3.24172 3.26337 3.30031 3.77547 3.85720 3.91962 4.13136 4.37139 4.55805 4.72434 4.73402 4.83948 4.89927 5.00261 5.07100 5.10608 5.16089 5.17205 5.20344 5.28476 5.38050 5.43305 5.45335 5.54942 5.68203 5.74042 5.89872 5.90614 5.95037 6.05982 6.21372 6.35254 6.41409 6.50981 6.56556 6.91167 7.10478 7.42805 7.51626 7.62276 7.68044 8.02225 8.36374 8.56860 9.14104 9.49798 10.01160 10.71885 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.002251 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.247859 B =12435.616619 C =14112.465946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.581 6.581 12 C 0.047 3.953 13 N -0.659 5.659 14 C 0.075 3.925 15 H 0.094 0.906 16 C 0.046 3.954 17 O -0.565 6.565 18 C 0.138 3.862 19 N -0.713 5.713 20 C 0.513 3.487 21 O -0.543 6.543 22 C -0.106 4.106 23 C -0.060 4.060 24 C -0.105 4.105 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.363 0.637 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -19.664 -6.248 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.293 5.293 14 C -0.036 4.036 15 H 0.112 0.888 16 C -0.034 4.034 17 O -0.370 6.370 18 C 0.014 3.986 19 N -0.365 5.365 20 C 0.299 3.701 21 O -0.421 6.421 22 C -0.146 4.146 23 C -0.061 4.061 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.681 -20.076 -7.163 21.484 hybrid contribution -1.168 1.183 1.400 2.174 sum 1.513 -18.893 -5.762 19.810 Atomic orbital electron populations 1.69610 1.05929 1.28177 1.50616 1.25261 0.95645 0.99746 0.97307 0.85856 0.79234 0.80773 0.78431 1.20362 1.20950 1.19419 1.19697 0.93370 0.82206 1.47564 0.87919 1.41863 1.09158 1.04612 1.64393 1.19773 0.88401 0.84655 0.84650 1.90544 1.13695 1.86995 1.55214 1.21759 0.94476 0.91249 1.01040 1.60151 1.18054 0.98829 1.52245 1.21993 0.97421 0.90821 0.93414 0.88818 1.22844 0.87241 0.99765 0.93553 1.86498 1.31167 1.92275 1.27084 1.21166 0.98887 0.95192 0.83377 1.45815 1.50094 1.23024 1.17579 1.20433 0.78396 0.84459 0.86797 1.90708 1.55919 1.23047 1.72420 1.20698 1.00575 0.99083 0.94211 1.19315 0.93672 0.95905 0.97177 1.21043 0.93075 0.99132 0.99024 1.21104 0.99730 0.94915 0.98031 1.21115 0.95247 0.98571 0.99329 1.21072 0.93836 0.98744 1.00307 1.20969 0.99552 0.94352 0.97628 0.91871 0.77516 0.93953 0.89624 0.81542 0.93019 0.93118 0.77284 0.90448 0.91826 0.75560 0.88031 0.87567 0.86072 0.86156 0.86352 0.86264 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 10 C 0.44 9.90 7.82 -10.98 -0.09 9.82 16 11 O -0.58 -15.31 15.78 5.55 0.09 -15.22 16 12 C 0.05 0.76 5.96 -4.97 -0.03 0.73 16 13 N -0.66 -9.76 5.32 -107.99 -0.57 -10.34 16 14 C 0.07 0.83 2.57 -67.71 -0.17 0.66 16 15 H 0.09 0.89 7.80 -51.93 -0.40 0.49 16 16 C 0.05 0.45 6.71 37.15 0.25 0.70 16 17 O -0.56 -6.07 12.05 -35.23 -0.42 -6.49 16 18 C 0.14 1.70 5.26 -4.04 -0.02 1.68 16 19 N -0.71 -8.74 5.39 -60.29 -0.32 -9.07 16 20 C 0.51 6.87 7.82 -10.99 -0.09 6.79 16 21 O -0.54 -9.31 16.03 5.55 0.09 -9.22 16 22 C -0.11 -1.11 5.83 -29.04 -0.17 -1.28 16 23 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 24 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 25 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 31 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 32 H 0.09 1.20 8.06 -51.93 -0.42 0.79 16 33 H 0.36 6.21 7.64 -39.29 -0.30 5.91 16 34 H 0.05 0.50 7.35 -51.93 -0.38 0.11 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 2.43 9.12 45.56 0.42 2.85 16 37 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.41 4.69 8.14 -40.82 -0.33 4.35 16 40 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -34.76 393.83 -8.37 -43.13 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -5.82 Total: 20.53 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.98 Total: 2.14 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.23 Total: -56.51 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.25 Total: -30.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.76 -8.37 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.976 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds