Wall clock time and date at job start Tue Mar 31 2020 18:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46871 * 35.00433 * 14 13 12 16 16 C 1.52994 * 109.47113 * 275.00325 * 14 13 12 17 17 O 1.42902 * 109.47338 * 294.99847 * 16 14 13 18 18 C 1.53002 * 109.47092 * 155.00227 * 14 13 12 19 19 N 1.46504 * 109.47066 * 304.99917 * 18 14 13 20 20 C 1.34771 * 120.00168 * 179.97438 * 19 18 14 21 21 O 1.21289 * 119.99722 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.99997 * 180.02562 * 20 19 18 23 23 C 1.50703 * 109.46871 * 180.02562 * 22 20 19 24 24 C 1.38237 * 120.00142 * 269.72521 * 23 22 20 25 25 C 1.38231 * 120.00344 * 179.76712 * 24 23 22 26 26 C 1.38242 * 119.99750 * 0.50544 * 25 24 23 27 27 C 1.38235 * 119.99975 * 359.75358 * 26 25 24 28 28 C 1.38237 * 120.00145 * 90.00407 * 23 22 20 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.00898 * 110.99877 * 56.04636 * 13 12 10 34 34 H 1.08998 * 109.47596 * 55.00036 * 16 14 13 35 35 H 1.09007 * 109.47272 * 175.00278 * 16 14 13 36 36 H 0.96703 * 114.00717 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46986 * 65.00067 * 18 14 13 38 38 H 1.08994 * 109.46981 * 185.00297 * 18 14 13 39 39 H 0.97000 * 119.99510 * 0.02562 * 19 18 14 40 40 H 1.09000 * 109.47328 * 299.99894 * 22 20 19 41 41 H 1.08997 * 109.47563 * 60.00601 * 22 20 19 42 42 H 1.08003 * 119.99644 * 0.02562 * 24 23 22 43 43 H 1.08000 * 120.00388 * 180.23009 * 25 24 23 44 44 H 1.07998 * 120.00110 * 179.72150 * 26 25 24 45 45 H 1.07997 * 120.00048 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.99769 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5850 -7.1888 -0.5908 16 6 1.1452 -7.6594 1.4354 17 8 2.3459 -7.8805 2.1780 18 6 2.4043 -8.3423 -0.6116 19 7 2.8392 -7.9136 -1.9434 20 6 3.6502 -8.7038 -2.6742 21 8 4.0204 -9.7697 -2.2292 22 6 4.0980 -8.2626 -4.0438 23 6 4.9903 -9.3180 -4.6447 24 6 6.3565 -9.2661 -4.4407 25 6 7.1745 -10.2369 -4.9879 26 6 6.6273 -11.2538 -5.7479 27 6 5.2616 -11.3027 -5.9563 28 6 4.4431 -10.3348 -5.4048 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 2.8335 -5.9126 0.7798 34 1 0.5740 -6.8553 1.8994 35 1 0.5488 -8.5718 1.4290 36 1 2.1977 -8.1306 3.1003 37 1 3.2762 -8.4870 0.0263 38 1 1.8542 -9.2796 -0.6934 39 1 2.5440 -7.0607 -2.2987 40 1 3.2263 -8.1179 -4.6820 41 1 4.6480 -7.3252 -3.9618 42 1 6.7844 -8.4694 -3.8503 43 1 8.2415 -10.1984 -4.8254 44 1 7.2668 -12.0097 -6.1791 45 1 4.8342 -12.0969 -6.5504 46 1 3.3762 -10.3731 -5.5675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331738327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:15 Heat of formation + Delta-G solvation = -128.635828 kcal Electronic energy + Delta-G solvation = -27827.090587 eV Core-core repulsion = 23715.058785 eV Total energy + Delta-G solvation = -4112.031802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01106 -40.24819 -39.63435 -38.76584 -36.44147 -35.92153 -34.87060 -33.78623 -33.23743 -31.74292 -31.28611 -28.81216 -27.76972 -26.31094 -25.57996 -23.44851 -22.66209 -21.86912 -21.11919 -21.02713 -19.91175 -18.56448 -18.10923 -17.75919 -17.63822 -16.95690 -16.77204 -16.60731 -16.41168 -16.07291 -15.88112 -15.70504 -15.41558 -15.17906 -15.08522 -14.52858 -14.45772 -14.24066 -13.95402 -13.87917 -13.54586 -13.33420 -13.30237 -13.08827 -12.89601 -12.79198 -12.57749 -12.40352 -12.24767 -12.12326 -11.97315 -11.84482 -11.49236 -10.98853 -10.89129 -10.32606 -9.99192 -9.94495 -9.77663 -9.60323 -9.32840 -8.45550 -5.93476 0.45090 0.54476 1.38432 1.42646 1.54566 1.71982 2.08450 2.29052 2.33836 2.85439 2.98912 3.22224 3.35498 3.67237 3.73911 3.84986 3.96990 4.01702 4.16962 4.19615 4.30154 4.31479 4.36046 4.41473 4.45646 4.55683 4.61921 4.63423 4.68162 4.72661 4.79180 4.80938 5.02729 5.15668 5.18893 5.42609 5.55237 5.58910 5.64425 5.70650 5.90624 6.11565 6.15677 6.34001 6.62457 6.67833 6.88909 7.15102 7.35138 7.59297 8.15218 8.71583 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.002251 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.247859 B =12435.616619 C =14112.465946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.670 5.670 14 C 0.079 3.921 15 H 0.121 0.879 16 C 0.047 3.953 17 O -0.590 6.590 18 C 0.143 3.857 19 N -0.707 5.707 20 C 0.511 3.489 21 O -0.585 6.585 22 C -0.100 4.100 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.121 4.121 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.348 0.652 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -20.256 -6.952 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.031 4.031 15 H 0.138 0.862 16 C -0.032 4.032 17 O -0.398 6.398 18 C 0.018 3.982 19 N -0.358 5.358 20 C 0.298 3.702 21 O -0.466 6.466 22 C -0.140 4.140 23 C -0.079 4.079 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.086 0.914 30 H 0.231 0.769 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.251 -20.666 -7.864 22.147 hybrid contribution -0.704 1.277 1.632 2.189 sum 0.547 -19.389 -6.232 20.374 Atomic orbital electron populations 1.69661 1.06673 1.29193 1.50478 1.25976 0.96535 1.02250 0.96458 0.84977 0.77864 0.77180 0.78628 1.19654 1.19638 1.20006 1.19616 0.92604 0.84117 1.49727 0.90544 1.41917 1.09316 1.04643 1.65188 1.20934 0.88244 0.86226 0.82064 1.90518 1.16035 1.87964 1.56487 1.21630 0.93952 0.87776 1.03451 1.60106 1.18301 1.00044 1.51785 1.22088 0.97565 0.88403 0.95074 0.86156 1.22855 0.87052 1.01129 0.92197 1.86466 1.32216 1.92472 1.28641 1.21107 0.98024 0.96178 0.82906 1.45832 1.49585 1.22978 1.17444 1.20934 0.77772 0.83846 0.87659 1.90681 1.57489 1.24918 1.73528 1.20722 1.01531 0.98915 0.92810 1.19533 0.93897 0.96715 0.97805 1.21241 0.93681 0.99884 0.99883 1.21398 1.00629 0.94873 0.97988 1.21472 0.95745 0.98761 0.98865 1.21440 0.94021 0.99019 1.00104 1.21252 1.00544 0.94409 0.97666 0.91363 0.76911 0.91583 0.86753 0.83252 0.92543 0.90576 0.75330 0.93447 0.90867 0.74929 0.85371 0.86958 0.86331 0.84582 0.83935 0.83926 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 2 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 3 Si 0.99 42.30 29.55 68.60 2.03 44.32 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -28.10 5.29 -306.98 -1.62 -29.72 16 10 C 0.44 19.66 7.82 87.66 0.69 20.35 16 11 O -0.62 -33.59 15.78 -3.07 -0.05 -33.64 16 12 C 0.06 1.91 5.96 85.56 0.51 2.42 16 13 N -0.67 -18.99 5.32 -495.56 -2.63 -21.62 16 14 C 0.08 1.59 2.57 44.91 0.12 1.70 16 15 H 0.12 1.82 7.80 -2.39 -0.02 1.80 16 16 C 0.05 0.80 6.71 71.98 0.48 1.28 16 17 O -0.59 -12.07 12.05 -148.98 -1.80 -13.86 16 18 C 0.14 3.38 5.26 86.38 0.45 3.83 16 19 N -0.71 -16.77 5.39 -463.06 -2.50 -19.27 16 20 C 0.51 13.59 7.82 87.66 0.69 14.28 16 21 O -0.59 -20.37 16.03 -3.06 -0.05 -20.42 16 22 C -0.10 -2.04 5.83 29.10 0.17 -1.87 16 23 C -0.08 -1.83 4.37 -19.86 -0.09 -1.91 16 24 C -0.13 -3.04 9.70 22.27 0.22 -2.82 16 25 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 26 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 28 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 29 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.40 18.29 7.90 -92.71 -0.73 17.56 16 31 H 0.07 1.71 7.36 -2.39 -0.02 1.69 16 32 H 0.11 2.82 8.06 -2.39 -0.02 2.81 16 33 H 0.35 11.83 7.64 -89.70 -0.69 11.15 16 34 H 0.06 0.91 7.35 -2.39 -0.02 0.90 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.40 4.63 9.12 -74.06 -0.68 3.95 16 37 H 0.05 1.43 7.39 -2.39 -0.02 1.41 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.41 8.93 8.14 -92.71 -0.75 8.18 16 40 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.11 2.12 8.08 -2.39 -0.02 2.10 16 42 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -77.07 393.83 -2.74 -79.81 By element: Atomic # 1 Polarization: 53.71 SS G_CDS: -1.80 Total: 51.91 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.40 Total: 10.49 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -6.47 Total: -118.62 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: -1.89 Total: -67.92 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -77.07 -2.74 -79.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.827 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds