Wall clock time and date at job start Tue Mar 31 2020 19:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48501 * 109.47252 * 239.99993 * 3 2 1 5 5 H 1.48497 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46998 * 120.00219 * 3 2 1 7 7 C 1.37872 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00034 * 181.97723 * 7 2 1 9 9 C 1.50705 * 120.00252 * 1.97610 * 7 2 1 10 10 C 1.52993 * 115.54986 * 84.65488 * 9 7 2 11 11 N 1.46504 * 109.47170 * 57.83948 * 10 9 7 12 12 C 1.34772 * 119.99846 * 185.19135 * 11 10 9 13 13 O 1.21349 * 120.00577 * 5.58970 * 12 11 10 14 14 C 1.49449 * 119.99918 * 185.58666 * 12 11 10 15 15 O 1.21355 * 120.00157 * 354.46161 * 14 12 11 16 16 N 1.34776 * 120.00595 * 174.73810 * 14 12 11 17 17 C 1.47070 * 136.04910 * 359.34870 * 16 14 12 18 18 C 1.53754 * 87.88544 * 152.96863 * 17 16 14 19 19 N 1.46494 * 114.27064 * 139.79183 * 18 17 16 20 20 C 1.46766 * 124.35230 * 146.20237 * 19 18 17 21 21 C 1.54660 * 105.38374 * 162.85773 * 20 19 18 22 22 C 1.54630 * 101.68615 * 25.76524 * 21 20 19 23 23 C 1.34422 * 124.34905 * 326.50403 * 19 18 17 24 24 O 1.21284 * 124.94144 * 0.42257 * 23 19 18 25 25 C 1.47058 * 136.06584 * 179.72529 * 16 14 12 26 26 C 1.53005 * 117.49819 * 230.33019 * 9 7 2 27 27 C 1.53003 * 117.49266 * 298.98898 * 9 7 2 28 28 H 0.96999 * 120.00072 * 5.01969 * 1 2 3 29 29 H 1.09000 * 109.47365 * 297.83910 * 10 9 7 30 30 H 1.09003 * 109.46789 * 177.83761 * 10 9 7 31 31 H 0.96997 * 119.99729 * 5.20032 * 11 10 9 32 32 H 1.08997 * 113.47117 * 267.69485 * 17 16 14 33 33 H 1.09002 * 113.47071 * 38.14142 * 17 16 14 34 34 H 1.09008 * 114.39718 * 272.67990 * 18 17 16 35 35 H 1.08998 * 110.24517 * 281.98389 * 20 19 18 36 36 H 1.08994 * 110.24803 * 43.98357 * 20 19 18 37 37 H 1.09003 * 111.18801 * 267.59060 * 21 20 19 38 38 H 1.09003 * 110.82107 * 143.77969 * 21 20 19 39 39 H 1.08998 * 110.48350 * 216.31318 * 22 21 20 40 40 H 1.08996 * 110.59745 * 93.72285 * 22 21 20 41 41 H 1.09006 * 113.46825 * 321.86889 * 25 16 14 42 42 H 1.09004 * 113.47201 * 92.30160 * 25 16 14 43 43 H 1.08997 * 117.49382 * 215.00082 * 26 9 7 44 44 H 1.09003 * 117.49830 * 0.02562 * 26 9 7 45 45 H 1.08994 * 117.50244 * 359.97024 * 27 9 7 46 46 H 1.09003 * 117.49448 * 144.97621 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2517 -2.4988 -0.0461 10 6 0.8519 -2.9815 -1.4418 11 7 2.0506 -3.1212 -2.2723 12 6 1.9332 -3.4350 -3.5777 13 8 0.8348 -3.5022 -4.0892 14 6 3.1557 -3.7001 -4.3954 15 8 4.2566 -3.5353 -3.9120 16 7 3.0357 -4.1170 -5.6714 17 6 1.9249 -4.4287 -6.5835 18 6 2.8556 -4.0617 -7.7510 19 7 2.7386 -4.9440 -8.9146 20 6 2.8990 -4.5054 -10.3059 21 6 3.1298 -5.7998 -11.1202 22 6 2.4289 -6.8560 -10.2347 23 6 2.4647 -6.2582 -8.8455 24 8 2.2738 -6.8749 -7.8187 25 6 3.9577 -4.4667 -6.7624 26 6 1.6178 -3.5622 0.9913 27 6 0.2940 -2.8023 1.1078 28 1 -0.4850 0.8368 -0.0735 29 1 0.1767 -2.2570 -1.8972 30 1 0.3502 -3.9459 -1.3627 31 1 2.9288 -2.9879 -1.8825 32 1 1.6361 -5.4796 -6.5726 33 1 1.0739 -3.7560 -6.4769 34 1 2.8557 -3.0032 -8.0112 35 1 1.9972 -3.9974 -10.6476 36 1 3.7617 -3.8454 -10.3963 37 1 4.1931 -6.0181 -11.2201 38 1 2.6534 -5.7325 -12.0983 39 1 2.9765 -7.7981 -10.2588 40 1 1.3991 -7.0059 -10.5591 41 1 4.8388 -3.8265 -6.8082 42 1 4.2048 -5.5277 -6.7987 43 1 1.5737 -4.6056 0.6794 44 1 2.4028 -3.3178 1.7070 45 1 0.2087 -2.0587 1.9000 46 1 -0.6212 -3.3458 0.8725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334291159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:43 Heat of formation + Delta-G solvation = -23.240482 kcal Electronic energy + Delta-G solvation = -28809.305669 eV Core-core repulsion = 24701.844152 eV Total energy + Delta-G solvation = -4107.461517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45061 -40.07052 -38.66026 -37.45839 -36.74031 -36.67107 -33.42882 -32.46482 -31.96255 -29.14044 -27.99038 -26.92755 -26.21655 -25.38658 -23.85507 -22.44376 -21.82974 -21.10090 -19.63371 -19.37413 -18.93287 -17.74037 -17.29819 -17.05927 -16.60916 -16.07477 -15.59243 -15.50018 -15.04750 -14.76303 -14.59144 -14.40688 -14.15502 -13.90876 -13.76579 -13.46129 -13.33582 -13.00698 -12.79944 -12.75003 -12.62597 -12.54706 -11.96206 -11.87741 -11.59924 -11.54805 -11.36070 -11.06853 -10.94930 -10.91911 -10.53549 -10.23750 -10.07254 -9.60064 -9.16553 -9.08869 -9.05272 -8.79350 -8.50158 -8.39049 -8.09579 -6.07693 -4.16608 1.82199 2.15591 2.19136 2.77293 3.29732 3.34394 3.37588 3.63596 3.80199 3.87444 3.94989 4.06436 4.33805 4.37549 4.51131 4.58958 4.74598 4.88969 4.98424 5.04161 5.21116 5.21191 5.27464 5.29481 5.33947 5.35865 5.45929 5.47829 5.64396 5.74232 5.99136 6.25612 6.29595 6.42939 6.47896 6.68415 6.69900 6.78038 7.07727 7.09662 7.35146 7.45875 7.50285 7.75891 7.78221 7.82349 8.20765 8.32873 8.60155 8.85148 9.51003 11.00389 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.920574 B =11523.269513 C =12093.584756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.161 3.839 11 N -0.664 5.664 12 C 0.502 3.498 13 O -0.534 6.534 14 C 0.542 3.458 15 O -0.519 6.519 16 N -0.620 5.620 17 C 0.089 3.911 18 C 0.114 3.886 19 N -0.609 5.609 20 C 0.101 3.899 21 C -0.132 4.132 22 C -0.155 4.155 23 C 0.515 3.485 24 O -0.520 6.520 25 C 0.097 3.903 26 C -0.211 4.211 27 C -0.141 4.141 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.413 0.587 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -10.111 -24.207 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.021 3.979 10 C 0.038 3.962 11 N -0.314 5.314 12 C 0.281 3.719 13 O -0.412 6.412 14 C 0.326 3.674 15 O -0.393 6.393 16 N -0.357 5.357 17 C -0.034 4.034 18 C 0.010 3.990 19 N -0.343 5.343 20 C -0.022 4.022 21 C -0.170 4.170 22 C -0.196 4.196 23 C 0.304 3.696 24 O -0.396 6.396 25 C -0.027 4.027 26 C -0.248 4.248 27 C -0.179 4.179 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.250 0.750 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.757 -10.137 -23.337 25.884 hybrid contribution 0.814 1.089 0.132 1.366 sum 5.571 -9.048 -23.205 25.522 Atomic orbital electron populations 1.69977 1.05830 1.27073 1.48284 1.24974 0.94841 0.98969 0.94223 0.86691 0.79672 0.83110 0.78774 1.20144 1.21270 1.20136 1.20333 0.92409 0.88488 1.52453 0.92090 1.19025 0.99537 0.93702 0.85625 1.21158 0.85046 0.98576 0.91410 1.45804 1.12830 1.65192 1.07604 1.19705 0.88411 0.80143 0.83657 1.90692 1.27096 1.52233 1.71219 1.20085 0.90123 0.77481 0.79668 1.90757 1.27825 1.51228 1.69538 1.48851 1.11939 1.64797 1.10064 1.23780 0.91958 1.04796 0.82912 1.22962 0.97667 0.95058 0.83312 1.48134 1.70617 1.08975 1.06574 1.22195 1.02505 0.97499 0.80000 1.22638 1.02059 0.93423 0.98843 1.22350 1.03950 1.00303 0.92951 1.21020 0.75308 0.81824 0.91494 1.90726 1.49222 1.64868 1.34807 1.23445 0.94954 1.01955 0.82373 1.23069 1.00142 0.95594 1.06011 1.22477 0.91134 1.01297 1.03020 0.92820 0.90385 0.93947 0.75049 0.86577 0.88590 0.85146 0.90581 0.89965 0.89799 0.88999 0.87910 0.87591 0.89677 0.89062 0.91575 0.90205 0.89470 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.46 12.72 55.43 0.71 -23.76 16 2 C 0.07 2.00 5.43 -17.82 -0.10 1.90 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -13.20 8.38 -34.44 -0.29 -13.49 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.02 0.53 1.51 -155.66 -0.23 0.29 16 10 C 0.16 3.69 5.57 -4.04 -0.02 3.67 16 11 N -0.66 -14.21 5.37 -60.73 -0.33 -14.54 16 12 C 0.50 10.35 7.88 -11.59 -0.09 10.25 16 13 O -0.53 -11.69 15.14 5.50 0.08 -11.61 16 14 C 0.54 10.18 8.14 -11.59 -0.09 10.08 16 15 O -0.52 -10.63 17.27 5.49 0.09 -10.54 16 16 N -0.62 -9.54 3.69 -185.61 -0.68 -10.22 16 17 C 0.09 1.18 7.10 -8.38 -0.06 1.12 16 18 C 0.11 1.06 5.02 -67.69 -0.34 0.72 16 19 N -0.61 -4.56 3.18 -164.36 -0.52 -5.08 16 20 C 0.10 0.37 7.36 -3.02 -0.02 0.34 16 21 C -0.13 -0.31 7.19 -25.00 -0.18 -0.49 16 22 C -0.16 -0.74 6.86 -26.74 -0.18 -0.93 16 23 C 0.52 4.74 7.49 -10.86 -0.08 4.65 16 24 O -0.52 -7.10 14.49 5.55 0.08 -7.02 16 25 C 0.10 1.12 8.17 -8.52 -0.07 1.05 16 26 C -0.21 -4.51 9.94 -26.69 -0.27 -4.77 16 27 C -0.14 -3.26 9.26 -26.69 -0.25 -3.50 16 28 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 29 H 0.08 2.01 8.09 -51.93 -0.42 1.58 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.41 8.74 7.73 -40.82 -0.32 8.42 16 32 H 0.12 1.72 5.40 -51.93 -0.28 1.44 16 33 H 0.10 1.34 7.29 -51.93 -0.38 0.96 16 34 H 0.13 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 45 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.35 385.83 -8.87 -42.22 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.82 Total: 7.76 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -2.28 Total: 10.90 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.83 Total: -53.60 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: 0.26 Total: -29.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.35 -8.87 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334291159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.977 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds