Wall clock time and date at job start Tue Mar 31 2020 19:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48501 * 109.47252 * 239.99993 * 3 2 1 5 5 H 1.48497 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46998 * 120.00219 * 3 2 1 7 7 C 1.37872 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00034 * 181.97723 * 7 2 1 9 9 C 1.50705 * 120.00252 * 1.97610 * 7 2 1 10 10 C 1.52993 * 115.54986 * 84.65488 * 9 7 2 11 11 N 1.46504 * 109.47170 * 57.83948 * 10 9 7 12 12 C 1.34772 * 119.99846 * 185.19135 * 11 10 9 13 13 O 1.21349 * 120.00577 * 5.58970 * 12 11 10 14 14 C 1.49449 * 119.99918 * 185.58666 * 12 11 10 15 15 O 1.21355 * 120.00157 * 354.46161 * 14 12 11 16 16 N 1.34776 * 120.00595 * 174.73810 * 14 12 11 17 17 C 1.47070 * 136.04910 * 359.34870 * 16 14 12 18 18 C 1.53754 * 87.88544 * 152.96863 * 17 16 14 19 19 N 1.46494 * 114.27064 * 139.79183 * 18 17 16 20 20 C 1.46766 * 124.35230 * 146.20237 * 19 18 17 21 21 C 1.54660 * 105.38374 * 162.85773 * 20 19 18 22 22 C 1.54630 * 101.68615 * 25.76524 * 21 20 19 23 23 C 1.34422 * 124.34905 * 326.50403 * 19 18 17 24 24 O 1.21284 * 124.94144 * 0.42257 * 23 19 18 25 25 C 1.47058 * 136.06584 * 179.72529 * 16 14 12 26 26 C 1.53005 * 117.49819 * 230.33019 * 9 7 2 27 27 C 1.53003 * 117.49266 * 298.98898 * 9 7 2 28 28 H 0.96999 * 120.00072 * 5.01969 * 1 2 3 29 29 H 1.09000 * 109.47365 * 297.83910 * 10 9 7 30 30 H 1.09003 * 109.46789 * 177.83761 * 10 9 7 31 31 H 0.96997 * 119.99729 * 5.20032 * 11 10 9 32 32 H 1.08997 * 113.47117 * 267.69485 * 17 16 14 33 33 H 1.09002 * 113.47071 * 38.14142 * 17 16 14 34 34 H 1.09008 * 114.39718 * 272.67990 * 18 17 16 35 35 H 1.08998 * 110.24517 * 281.98389 * 20 19 18 36 36 H 1.08994 * 110.24803 * 43.98357 * 20 19 18 37 37 H 1.09003 * 111.18801 * 267.59060 * 21 20 19 38 38 H 1.09003 * 110.82107 * 143.77969 * 21 20 19 39 39 H 1.08998 * 110.48350 * 216.31318 * 22 21 20 40 40 H 1.08996 * 110.59745 * 93.72285 * 22 21 20 41 41 H 1.09006 * 113.46825 * 321.86889 * 25 16 14 42 42 H 1.09004 * 113.47201 * 92.30160 * 25 16 14 43 43 H 1.08997 * 117.49382 * 215.00082 * 26 9 7 44 44 H 1.09003 * 117.49830 * 0.02562 * 26 9 7 45 45 H 1.08994 * 117.50244 * 359.97024 * 27 9 7 46 46 H 1.09003 * 117.49448 * 144.97621 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2517 -2.4988 -0.0461 10 6 0.8519 -2.9815 -1.4418 11 7 2.0506 -3.1212 -2.2723 12 6 1.9332 -3.4350 -3.5777 13 8 0.8348 -3.5022 -4.0892 14 6 3.1557 -3.7001 -4.3954 15 8 4.2566 -3.5353 -3.9120 16 7 3.0357 -4.1170 -5.6714 17 6 1.9249 -4.4287 -6.5835 18 6 2.8556 -4.0617 -7.7510 19 7 2.7386 -4.9440 -8.9146 20 6 2.8990 -4.5054 -10.3059 21 6 3.1298 -5.7998 -11.1202 22 6 2.4289 -6.8560 -10.2347 23 6 2.4647 -6.2582 -8.8455 24 8 2.2738 -6.8749 -7.8187 25 6 3.9577 -4.4667 -6.7624 26 6 1.6178 -3.5622 0.9913 27 6 0.2940 -2.8023 1.1078 28 1 -0.4850 0.8368 -0.0735 29 1 0.1767 -2.2570 -1.8972 30 1 0.3502 -3.9459 -1.3627 31 1 2.9288 -2.9879 -1.8825 32 1 1.6361 -5.4796 -6.5726 33 1 1.0739 -3.7560 -6.4769 34 1 2.8557 -3.0032 -8.0112 35 1 1.9972 -3.9974 -10.6476 36 1 3.7617 -3.8454 -10.3963 37 1 4.1931 -6.0181 -11.2201 38 1 2.6534 -5.7325 -12.0983 39 1 2.9765 -7.7981 -10.2588 40 1 1.3991 -7.0059 -10.5591 41 1 4.8388 -3.8265 -6.8082 42 1 4.2048 -5.5277 -6.7987 43 1 1.5737 -4.6056 0.6794 44 1 2.4028 -3.3178 1.7070 45 1 0.2087 -2.0587 1.9000 46 1 -0.6212 -3.3458 0.8725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334291159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:43 Heat of formation + Delta-G solvation = -46.737176 kcal Electronic energy + Delta-G solvation = -28810.324562 eV Core-core repulsion = 24701.844152 eV Total energy + Delta-G solvation = -4108.480410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38372 -41.31777 -39.98143 -38.83692 -38.49642 -37.39380 -35.14956 -34.00045 -33.17910 -30.22161 -28.62284 -28.39629 -27.47442 -27.21007 -25.06366 -23.16776 -22.85679 -22.72012 -21.44653 -20.56175 -20.04157 -19.11056 -18.27828 -18.14283 -17.88548 -17.46089 -16.91412 -16.73160 -16.60944 -16.23874 -15.95971 -15.72576 -15.30798 -14.97526 -14.71023 -14.67168 -14.47326 -14.19791 -13.96491 -13.79882 -13.70289 -13.58750 -13.50770 -13.16567 -12.96365 -12.83359 -12.77008 -12.41556 -12.24189 -12.19982 -12.04523 -11.73790 -11.46656 -11.02529 -10.88221 -10.73069 -10.45224 -10.24615 -9.99233 -9.91679 -9.74804 -8.13412 -6.26586 0.26912 0.99101 1.40863 1.41624 1.48574 1.48910 1.90277 2.07689 2.39742 2.45495 3.06169 3.14401 3.26667 3.43872 3.53175 3.63487 3.75756 3.95695 4.13931 4.16986 4.19836 4.27151 4.35792 4.45303 4.46850 4.58869 4.59655 4.63991 4.67837 4.76861 4.86968 4.89087 4.95757 4.99348 5.17424 5.25098 5.30294 5.31217 5.50426 5.55678 5.64577 5.73820 6.04993 6.16816 6.20262 6.32781 6.62349 6.79801 6.93550 7.11314 7.43071 8.94067 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.920574 B =11523.269513 C =12093.584756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.507 4.507 8 H 0.057 0.943 9 C -0.004 4.004 10 C 0.175 3.825 11 N -0.666 5.666 12 C 0.499 3.501 13 O -0.551 6.551 14 C 0.542 3.458 15 O -0.542 6.542 16 N -0.620 5.620 17 C 0.081 3.919 18 C 0.141 3.859 19 N -0.606 5.606 20 C 0.094 3.906 21 C -0.119 4.119 22 C -0.150 4.150 23 C 0.501 3.499 24 O -0.576 6.576 25 C 0.096 3.904 26 C -0.183 4.183 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.414 0.586 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -10.121 -26.923 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.075 0.925 9 C -0.004 4.004 10 C 0.052 3.948 11 N -0.316 5.316 12 C 0.280 3.720 13 O -0.430 6.430 14 C 0.326 3.674 15 O -0.420 6.420 16 N -0.355 5.355 17 C -0.042 4.042 18 C 0.036 3.964 19 N -0.339 5.339 20 C -0.027 4.027 21 C -0.157 4.157 22 C -0.190 4.190 23 C 0.291 3.709 24 O -0.456 6.456 25 C -0.027 4.027 26 C -0.220 4.220 27 C -0.184 4.184 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.251 0.749 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.055 -10.150 -26.134 28.683 hybrid contribution 0.382 1.015 0.898 1.408 sum 6.437 -9.135 -25.237 27.600 Atomic orbital electron populations 1.70082 1.06942 1.27504 1.49510 1.25644 0.95554 1.01847 0.94263 0.85806 0.78519 0.79735 0.78751 1.20118 1.21131 1.19505 1.20598 0.92434 0.89761 1.51713 0.92477 1.19077 1.00691 0.94183 0.86473 1.20835 0.85110 0.97975 0.90886 1.45743 1.12309 1.65545 1.07996 1.20131 0.89105 0.79300 0.83506 1.90674 1.28047 1.52770 1.71523 1.19582 0.88845 0.78341 0.80653 1.90737 1.27942 1.52969 1.70319 1.48992 1.14288 1.62801 1.09379 1.23870 0.92099 1.03672 0.84594 1.22772 0.93970 0.96685 0.82986 1.48296 1.69565 1.08371 1.07682 1.22546 1.04129 0.98553 0.77431 1.22681 1.02526 0.91342 0.99130 1.22393 1.05161 1.00998 0.90463 1.21901 0.74189 0.82306 0.92510 1.90694 1.51650 1.66147 1.37093 1.23659 0.95826 1.01952 0.81273 1.23064 0.98787 0.96094 1.04028 1.22401 0.92442 1.01495 1.02031 0.93072 0.93779 0.92853 0.74894 0.88177 0.89579 0.82176 0.89113 0.88068 0.89039 0.86409 0.87538 0.86444 0.87908 0.89773 0.89156 0.89841 0.91543 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.37 12.72 21.44 0.27 -51.09 16 2 C 0.03 1.52 5.43 84.65 0.46 1.98 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.51 -27.02 8.38 25.60 0.21 -26.80 16 8 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.00 -0.17 1.51 -52.93 -0.08 -0.25 16 10 C 0.18 8.18 5.57 86.38 0.48 8.66 16 11 N -0.67 -28.95 5.37 -464.42 -2.49 -31.44 16 12 C 0.50 21.01 7.88 87.27 0.69 21.70 16 13 O -0.55 -24.73 15.14 -3.24 -0.05 -24.78 16 14 C 0.54 20.55 8.14 87.27 0.71 21.26 16 15 O -0.54 -22.31 17.27 -3.26 -0.06 -22.37 16 16 N -0.62 -19.00 3.69 -859.51 -3.17 -22.17 16 17 C 0.08 2.14 7.10 83.26 0.59 2.74 16 18 C 0.14 2.36 5.02 45.55 0.23 2.59 16 19 N -0.61 -7.73 3.18 -792.51 -2.52 -10.25 16 20 C 0.09 0.32 7.36 86.89 0.64 0.95 16 21 C -0.12 -0.10 7.19 31.72 0.23 0.13 16 22 C -0.15 -1.09 6.86 30.59 0.21 -0.88 16 23 C 0.50 8.71 7.49 87.90 0.66 9.37 16 24 O -0.58 -16.13 14.49 -3.04 -0.04 -16.18 16 25 C 0.10 2.10 8.17 83.17 0.68 2.78 16 26 C -0.18 -7.59 9.94 30.62 0.30 -7.29 16 27 C -0.15 -6.71 9.26 30.62 0.28 -6.43 16 28 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 29 H 0.04 2.34 8.09 -2.39 -0.02 2.32 16 30 H 0.05 2.34 8.11 -2.39 -0.02 2.32 16 31 H 0.41 17.76 7.73 -92.71 -0.72 17.04 16 32 H 0.10 3.09 5.40 -2.39 -0.01 3.08 16 33 H 0.09 2.44 7.29 -2.39 -0.02 2.43 16 34 H 0.16 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.08 2.02 7.40 -2.39 -0.02 2.00 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -74.71 385.83 0.56 -74.15 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.29 Total: 28.03 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 6.30 Total: 30.50 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -7.91 Total: -114.95 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.15 Total: -63.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.71 0.56 -74.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334291159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds