Wall clock time and date at job start Tue Mar 31 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48505 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47503 * 300.00074 * 3 2 1 6 6 H 1.48495 * 109.47172 * 60.00536 * 3 2 1 7 7 C 1.37874 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00559 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47517 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47168 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47191 * 54.99900 * 11 10 9 13 13 N 1.46900 * 109.46835 * 294.99930 * 11 10 9 14 14 C 1.50703 * 109.47281 * 175.00043 * 11 10 9 15 15 O 1.21281 * 119.99990 * 99.99614 * 14 11 10 16 16 N 1.34770 * 119.99651 * 279.99879 * 14 11 10 17 17 C 1.46505 * 119.99664 * 179.97438 * 16 14 11 18 18 C 1.50706 * 109.47014 * 179.97438 * 17 16 14 19 19 C 1.38288 * 119.97406 * 269.72606 * 18 17 16 20 20 C 1.38244 * 120.10736 * 179.72349 * 19 18 17 21 21 C 1.38166 * 120.05844 * 0.55261 * 20 19 18 22 22 C 1.38707 * 119.94172 * 359.72376 * 21 20 19 23 23 O 1.35903 * 120.05737 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99318 * 0.02562 * 23 22 21 25 25 C 1.50699 * 109.46700 * 180.02562 * 24 23 22 26 26 N 1.34773 * 119.99971 * 179.97438 * 25 24 23 27 27 O 1.21284 * 120.00212 * 359.97438 * 25 24 23 28 28 C 1.38121 * 119.96795 * 89.99955 * 18 17 16 29 29 H 0.96997 * 120.00202 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46883 * 59.99564 * 9 7 2 31 31 H 1.09000 * 109.47035 * 300.00273 * 9 7 2 32 32 H 1.08994 * 109.47064 * 60.00224 * 10 9 7 33 33 H 1.08997 * 109.47256 * 299.99659 * 10 9 7 34 34 H 1.00902 * 111.00103 * 176.05036 * 13 11 10 35 35 H 1.00902 * 111.00046 * 299.99935 * 13 11 10 36 36 H 0.97000 * 120.00231 * 359.97438 * 16 14 11 37 37 H 1.09000 * 109.46864 * 60.00469 * 17 16 14 38 38 H 1.09000 * 109.47078 * 299.99722 * 17 16 14 39 39 H 1.07993 * 119.94253 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.96525 * 180.25587 * 20 19 18 41 41 H 1.07996 * 120.02864 * 179.70126 * 21 20 19 42 42 H 1.09002 * 109.46961 * 299.99762 * 24 23 22 43 43 H 1.08995 * 109.47309 * 60.00596 * 24 23 22 44 44 H 0.97005 * 120.00378 * 0.02562 * 26 25 24 45 45 H 0.97009 * 120.00357 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.03008 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 1 0.7878 -5.0064 -0.8440 13 7 0.7292 -5.1194 1.2530 14 6 2.4549 -6.1298 -0.1276 15 8 2.7872 -6.7540 0.8578 16 7 2.9571 -6.4579 -1.3343 17 6 3.9050 -7.5684 -1.4559 18 6 4.3103 -7.7273 -2.8987 19 6 3.5886 -8.5632 -3.7310 20 6 3.9544 -8.7066 -5.0564 21 6 5.0494 -8.0236 -5.5499 22 6 5.7784 -7.1890 -4.7156 23 8 6.8562 -6.5164 -5.1983 24 6 7.1815 -6.7156 -6.5756 25 6 8.3960 -5.8961 -6.9283 26 7 8.8886 -5.9269 -8.1824 27 8 8.9301 -5.2089 -6.0837 28 6 5.4057 -7.0423 -3.3871 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.8726 -3.6047 0.8877 33 1 2.8712 -3.6040 -0.8923 34 1 0.1648 -5.9558 1.2504 35 1 1.3494 -5.1042 2.0488 36 1 2.6911 -5.9589 -2.1224 37 1 3.4340 -8.4878 -1.1078 38 1 4.7876 -7.3606 -0.8510 39 1 2.7353 -9.1016 -3.3460 40 1 3.3867 -9.3568 -5.7055 41 1 5.3377 -8.1397 -6.5842 42 1 7.3922 -7.7707 -6.7502 43 1 6.3407 -6.4054 -7.1960 44 1 8.4613 -6.4763 -8.8581 45 1 9.6702 -5.3991 -8.4097 46 1 5.9714 -6.3927 -2.7356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345483831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:23 Heat of formation + Delta-G solvation = -98.130033 kcal Electronic energy + Delta-G solvation = -27473.325067 eV Core-core repulsion = 23362.616095 eV Total energy + Delta-G solvation = -4110.708972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86584 -39.91644 -39.45890 -37.85649 -35.30246 -34.75392 -34.28848 -32.75646 -31.66679 -30.85764 -30.04733 -28.61818 -27.22640 -25.64604 -23.42915 -22.90930 -22.15309 -20.91150 -20.63446 -19.79105 -18.58542 -18.20633 -17.17828 -16.85947 -16.80604 -16.34714 -16.29118 -16.16897 -15.86305 -15.42783 -14.89135 -14.72893 -14.42561 -14.32827 -14.20337 -13.92570 -13.58213 -13.34388 -13.04007 -12.81346 -12.56026 -12.27275 -11.97895 -11.92106 -11.55995 -11.48556 -11.28729 -10.87525 -10.64446 -10.48638 -10.47740 -10.29844 -10.13655 -9.76413 -9.36266 -9.29701 -9.06357 -8.93874 -8.60622 -8.30633 -8.16053 -5.90236 -3.91931 0.83201 1.07459 2.02307 2.18363 2.80691 3.14899 3.30527 3.37341 3.44795 3.49657 3.64919 4.13739 4.30325 4.36722 4.44408 4.48218 4.54103 4.66278 4.89089 4.94063 4.94359 5.11326 5.16731 5.38704 5.45483 5.56019 5.60115 5.67696 5.87256 5.88383 6.02291 6.14478 6.22921 6.32865 6.41463 6.50042 6.64656 6.70414 6.96657 7.13539 7.40967 7.62764 7.66015 7.80526 7.83702 8.00344 8.16955 8.33844 8.52805 9.16347 9.71230 11.20746 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008073 B = 0.002550 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.498682 B =10978.400725 C =13764.108293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.554 6.554 16 N -0.726 5.726 17 C 0.159 3.841 18 C -0.064 4.064 19 C -0.136 4.136 20 C -0.081 4.081 21 C -0.205 4.205 22 C 0.126 3.874 23 O -0.288 6.288 24 C 0.040 3.960 25 C 0.518 3.482 26 N -0.852 5.852 27 O -0.513 6.513 28 C -0.125 4.125 29 H 0.258 0.742 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.333 0.667 35 H 0.348 0.652 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.403 0.597 45 H 0.409 0.591 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.559 -22.336 -19.633 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.432 6.432 16 N -0.379 5.379 17 C 0.035 3.965 18 C -0.065 4.065 19 C -0.155 4.155 20 C -0.099 4.099 21 C -0.224 4.224 22 C 0.081 3.919 23 O -0.201 6.201 24 C -0.039 4.039 25 C 0.301 3.699 26 N -0.418 5.418 27 O -0.387 6.387 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.231 0.769 45 H 0.241 0.759 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.634 -21.443 -18.285 30.488 hybrid contribution 0.996 0.020 -1.156 1.526 sum 12.631 -21.423 -19.441 31.566 Atomic orbital electron populations 1.69986 1.05940 1.26256 1.51100 1.24991 0.94804 0.99060 0.95528 0.86599 0.80190 0.84101 0.77486 1.19806 1.21125 1.21080 1.21329 0.92972 0.91314 1.50246 0.92913 1.19019 0.93561 0.89852 0.98180 1.21663 0.98861 0.92143 1.00760 1.21840 0.93514 0.93240 0.95068 0.88423 1.59005 1.26926 1.44222 1.03293 1.22797 0.82186 0.85691 0.82365 1.90647 1.61156 1.54260 1.37138 1.46216 1.46417 1.34691 1.10602 1.20168 0.93827 0.91057 0.91443 1.19694 0.94729 0.96510 0.95537 1.21038 1.00619 1.00167 0.93676 1.20922 0.95608 0.97988 0.95382 1.21248 0.99289 1.01873 0.99995 1.18956 0.87162 0.92424 0.93330 1.86186 1.44205 1.64934 1.24749 1.22436 0.97114 1.00645 0.83719 1.20063 0.84924 0.82183 0.82737 1.43652 1.35070 1.51695 1.11423 1.90851 1.59597 1.40221 1.47993 1.20407 0.98577 1.02336 0.93132 0.93200 0.96900 0.94655 0.92809 0.92770 0.85494 0.83812 0.76056 0.90556 0.90525 0.85494 0.85426 0.85463 0.88817 0.88660 0.76899 0.75867 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 10 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 11 C 0.08 1.34 3.15 -68.86 -0.22 1.13 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.78 8.44 -5.65 -0.05 -13.82 16 14 C 0.48 7.67 7.07 -10.99 -0.08 7.59 16 15 O -0.55 -10.26 16.25 5.56 0.09 -10.17 16 16 N -0.73 -9.22 5.55 -61.47 -0.34 -9.56 16 17 C 0.16 1.78 5.80 -5.19 -0.03 1.75 16 18 C -0.06 -0.63 5.25 -104.64 -0.55 -1.18 16 19 C -0.14 -1.13 9.70 -39.56 -0.38 -1.51 16 20 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 21 C -0.21 -1.51 9.04 -39.43 -0.36 -1.87 16 22 C 0.13 1.26 6.69 -39.22 -0.26 1.00 16 23 O -0.29 -3.13 9.67 -39.35 -0.38 -3.51 16 24 C 0.04 0.24 5.22 36.01 0.19 0.43 16 25 C 0.52 4.14 8.18 -10.99 -0.09 4.06 16 26 N -0.85 -2.68 8.87 31.22 0.28 -2.40 16 27 O -0.51 -7.16 17.34 -14.36 -0.25 -7.41 16 28 C -0.13 -1.36 9.64 -39.43 -0.38 -1.74 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.33 4.91 9.06 -39.29 -0.36 4.55 16 35 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 36 H 0.40 4.62 8.46 -40.82 -0.35 4.27 16 37 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.55 6.30 -52.49 -0.33 0.22 16 42 H 0.09 0.29 7.66 -51.93 -0.40 -0.11 16 43 H 0.10 0.35 7.66 -51.93 -0.40 -0.05 16 44 H 0.40 -0.22 8.83 -40.82 -0.36 -0.58 16 45 H 0.41 1.10 8.93 -40.82 -0.36 0.74 16 46 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -38.87 396.43 -8.82 -47.70 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.63 Total: 9.07 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.23 Total: -6.48 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.62 Total: -52.34 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.54 Total: -21.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.87 -8.82 -47.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345483831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.435 kcal (2) G-P(sol) polarization free energy of solvation -38.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds