Wall clock time and date at job start Tue Mar 31 2020 18:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86796 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47294 * 274.98726 * 3 2 1 5 5 H 1.48496 * 109.47264 * 34.98790 * 3 2 1 6 6 H 1.48505 * 109.46812 * 154.98742 * 3 2 1 7 7 C 1.40031 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00154 * 173.73875 * 7 2 1 9 9 C 1.41339 * 119.99919 * 353.74598 * 7 2 1 10 10 C 1.40605 * 119.78485 * 186.44106 * 9 7 2 11 11 C 1.38307 * 119.13234 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.66836 * 359.97438 * 11 10 9 13 13 C 1.39637 * 119.49462 * 0.02562 * 12 11 10 14 14 N 1.39250 * 119.57507 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00118 * 341.16273 * 14 13 12 16 16 O 1.21582 * 119.99999 * 354.20388 * 15 14 13 17 17 N 1.34770 * 120.00649 * 174.20584 * 15 14 13 18 18 C 1.46496 * 120.00830 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47693 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47491 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.57356 * 65.15553 * 20 19 18 22 22 C 1.53175 * 109.53528 * 185.30971 * 20 19 18 23 23 C 1.53179 * 109.04771 * 176.87545 * 22 20 19 24 24 C 1.53096 * 109.16211 * 303.02467 * 23 22 20 25 25 O 1.42903 * 109.41559 * 57.60876 * 24 23 22 26 26 C 1.42912 * 114.09499 * 298.84270 * 25 24 23 27 27 N 1.31932 * 120.85311 * 0.25249 * 13 12 11 28 28 H 0.97006 * 119.99010 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.43460 * 0.03891 * 10 9 7 30 30 H 1.07994 * 120.67081 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25251 * 179.97438 * 12 11 10 32 32 H 0.97003 * 120.00407 * 161.16361 * 14 13 12 33 33 H 0.97010 * 119.99748 * 0.02562 * 17 15 14 34 34 H 1.08999 * 109.47236 * 59.99211 * 18 17 15 35 35 H 1.09005 * 109.46585 * 300.00158 * 18 17 15 36 36 H 1.08999 * 109.47393 * 59.99345 * 19 18 17 37 37 H 1.09003 * 109.46760 * 299.99731 * 19 18 17 38 38 H 0.96703 * 114.00066 * 299.84321 * 21 20 19 39 39 H 1.08999 * 109.53729 * 57.00740 * 22 20 19 40 40 H 1.08999 * 109.54298 * 296.74650 * 22 20 19 41 41 H 1.09003 * 109.52188 * 183.11936 * 23 22 20 42 42 H 1.09000 * 109.52393 * 62.92526 * 23 22 20 43 43 H 1.09002 * 109.47855 * 297.62383 * 24 23 22 44 44 H 1.08998 * 109.47883 * 177.59438 * 24 23 22 45 45 H 1.08994 * 109.47590 * 181.13840 * 26 25 24 46 46 H 1.09003 * 109.47799 * 301.16229 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1072 -1.3947 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4118 0.5920 7 6 2.0075 -1.2128 -0.0005 8 1 3.0827 -1.2156 -0.1025 9 6 1.3070 -2.4331 0.1323 10 6 2.0207 -3.6370 0.2676 11 6 1.3216 -4.8234 0.3961 12 6 -0.0647 -4.7831 0.3874 13 6 -0.7160 -3.5556 0.2496 14 7 -2.1078 -3.5132 0.2400 15 6 -2.8143 -4.6316 -0.0181 16 8 -2.2395 -5.6516 -0.3459 17 7 -4.1578 -4.6193 0.0870 18 6 -4.9257 -5.8350 -0.1931 19 6 -6.4169 -5.5521 -0.0008 20 6 -7.2189 -6.8216 -0.2940 21 8 -6.9007 -7.8232 0.6743 22 6 -8.7168 -6.5071 -0.2314 23 6 -9.5077 -7.7652 -0.6029 24 6 -9.0715 -8.2415 -1.9909 25 8 -7.6637 -8.4868 -1.9883 26 6 -6.8712 -7.3345 -1.6939 27 7 -0.0296 -2.4360 0.1229 28 1 -0.4849 0.8402 0.0004 29 1 3.1007 -3.6353 0.2715 30 1 1.8446 -5.7623 0.5020 31 1 -0.6362 -5.6942 0.4855 32 1 -2.5689 -2.6789 0.4192 33 1 -4.6165 -3.8054 0.3481 34 1 -4.6154 -6.6261 0.4895 35 1 -4.7449 -6.1503 -1.2208 36 1 -6.7276 -4.7608 -0.6831 37 1 -6.5974 -5.2371 1.0270 38 1 -5.9672 -8.0754 0.6871 39 1 -8.9511 -5.7081 -0.9349 40 1 -8.9819 -6.1947 0.7786 41 1 -10.5731 -7.5353 -0.6148 42 1 -9.3111 -8.5484 0.1293 43 1 -9.3054 -7.4739 -2.7287 44 1 -9.6002 -9.1608 -2.2425 45 1 -5.8149 -7.6007 -1.7315 46 1 -7.0761 -6.5552 -2.4279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364466571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:21 Heat of formation + Delta-G solvation = -84.229992 kcal Electronic energy + Delta-G solvation = -28438.043407 eV Core-core repulsion = 24327.937187 eV Total energy + Delta-G solvation = -4110.106221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52580 -39.92902 -37.95262 -37.01609 -35.03742 -34.20716 -33.44574 -33.26631 -31.91814 -30.39336 -29.38108 -28.23837 -25.70517 -25.47935 -24.45790 -22.21899 -21.58065 -21.50965 -20.51684 -20.20168 -18.24162 -17.53827 -17.29766 -16.78374 -16.43867 -16.24340 -15.70410 -15.25083 -15.00524 -14.86375 -14.67670 -14.44919 -14.32883 -14.06356 -13.67534 -13.48745 -13.23255 -13.01066 -12.86857 -12.36564 -12.29717 -12.13551 -11.98527 -11.65215 -11.54706 -11.27074 -11.24600 -11.10980 -10.91857 -10.75276 -10.66871 -10.53818 -10.12919 -9.84542 -9.57045 -9.32690 -9.10480 -8.96050 -8.02752 -7.67685 -7.06503 -6.42552 -4.49854 2.66087 2.85878 2.95588 3.08114 3.11662 3.24852 3.47973 3.67083 3.84238 3.94631 4.17354 4.27182 4.32389 4.54757 4.58969 4.76519 4.78887 4.79637 4.86848 4.97992 5.13905 5.17148 5.29326 5.36677 5.43285 5.53191 5.66348 5.70965 5.74229 5.90716 5.92119 6.15654 6.41358 6.45058 6.71109 6.81335 6.82392 6.92872 7.08861 7.21175 7.35309 7.51057 7.61641 7.90894 8.06438 8.16570 8.41480 8.70158 8.87954 9.02592 10.05262 10.30898 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002047 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.689807 B =13675.412773 C =14423.742020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.290 4.290 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.373 3.627 14 N -0.658 5.658 15 C 0.706 3.294 16 O -0.569 6.569 17 N -0.748 5.748 18 C 0.135 3.865 19 C -0.159 4.159 20 C 0.109 3.891 21 O -0.548 6.548 22 C -0.108 4.108 23 C -0.153 4.153 24 C 0.057 3.943 25 O -0.372 6.372 26 C 0.030 3.970 27 N -0.509 5.509 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.379 0.621 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 -8.050 -0.818 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.153 3.847 10 C -0.313 4.313 11 C -0.074 4.074 12 C -0.336 4.336 13 C 0.138 3.862 14 N -0.305 5.305 15 C 0.406 3.594 16 O -0.446 6.446 17 N -0.405 5.405 18 C 0.010 3.990 19 C -0.198 4.198 20 C 0.067 3.933 21 O -0.355 6.355 22 C -0.145 4.145 23 C -0.191 4.191 24 C -0.019 4.019 25 O -0.290 6.290 26 C -0.047 4.047 27 N -0.227 5.227 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.243 -8.212 -1.125 21.874 hybrid contribution 0.827 1.180 0.218 1.458 sum -19.415 -7.032 -0.907 20.669 Atomic orbital electron populations 1.70132 1.07229 1.27409 1.29871 1.26039 0.94877 1.01003 0.93383 0.86326 0.80652 0.80941 0.78958 1.19587 1.20190 1.18490 1.19550 0.94620 0.89325 1.43312 0.89676 1.18175 0.86304 0.92070 0.88129 1.21707 0.98780 0.93749 1.17055 1.20812 0.93703 0.96569 0.96335 1.21612 0.94525 0.98042 1.19466 1.18213 0.81923 0.91374 0.94731 1.42249 1.05608 1.10839 1.71798 1.15762 0.81130 0.83983 0.78533 1.90845 1.68380 1.32156 1.53193 1.45045 1.05085 1.14381 1.76009 1.21199 0.89044 0.87251 1.01464 1.22488 0.94390 0.98770 1.04118 1.21699 0.95446 0.87230 0.88941 1.86539 1.32001 1.58544 1.58412 1.21575 0.91932 0.97961 1.03078 1.22135 0.99742 0.98638 0.98542 1.22620 0.82115 1.01384 0.95818 1.87991 1.16811 1.33374 1.90853 1.23443 0.96688 0.89439 0.95124 1.68014 1.08411 1.24693 1.21632 0.91934 0.88240 0.88343 0.84989 0.76175 0.77033 0.91529 0.91336 0.89983 0.89721 0.77190 0.90466 0.90484 0.90931 0.90078 0.93331 0.88849 0.87881 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.75 11.49 55.55 0.64 -18.11 16 2 C 0.07 1.79 5.49 -17.34 -0.10 1.70 16 3 Si 0.91 18.41 29.56 -169.99 -5.03 13.38 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.44 -11.66 9.13 -37.73 -0.34 -12.00 16 8 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.28 7.75 6.54 -85.00 -0.56 7.19 16 10 C -0.29 -7.35 9.83 -38.66 -0.38 -7.73 16 11 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 12 C -0.31 -7.70 8.83 -38.89 -0.34 -8.04 16 13 C 0.37 9.29 7.51 -154.99 -1.16 8.13 16 14 N -0.66 -13.18 5.42 -15.79 -0.09 -13.27 16 15 C 0.71 12.80 8.40 -86.93 -0.73 12.07 16 16 O -0.57 -12.26 13.14 5.29 0.07 -12.19 16 17 N -0.75 -9.23 5.56 -65.23 -0.36 -9.59 16 18 C 0.13 1.35 4.98 -4.05 -0.02 1.33 16 19 C -0.16 -1.14 4.63 -26.74 -0.12 -1.26 16 20 C 0.11 0.84 0.76 -90.48 -0.07 0.77 16 21 O -0.55 -5.08 12.39 -42.69 -0.53 -5.61 16 22 C -0.11 -0.74 5.04 -26.55 -0.13 -0.87 16 23 C -0.15 -1.06 5.98 -26.59 -0.16 -1.22 16 24 C 0.06 0.42 6.84 37.21 0.25 0.68 16 25 O -0.37 -3.78 10.70 -42.69 -0.46 -4.23 16 26 C 0.03 0.25 5.20 37.21 0.19 0.45 16 27 N -0.51 -13.91 7.92 -10.26 -0.08 -13.99 16 28 H 0.27 6.29 8.29 -40.82 -0.34 5.95 16 29 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 30 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.13 3.23 5.33 -52.50 -0.28 2.95 16 32 H 0.40 7.17 8.84 -40.82 -0.36 6.81 16 33 H 0.40 3.81 8.49 -40.82 -0.35 3.46 16 34 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 35 H 0.07 0.73 6.41 -51.93 -0.33 0.40 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.38 2.81 7.55 45.56 0.34 3.15 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.69 7.83 -51.93 -0.41 0.29 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.88 6.50 -51.93 -0.34 0.54 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -33.71 372.07 -10.15 -43.86 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.85 Total: 14.54 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.07 Total: -0.40 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.11 Total: -54.96 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.92 Total: -22.03 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.71 -10.15 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364466571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.373 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds