Wall clock time and date at job start Tue Mar 31 2020 18:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86796 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47294 * 274.98726 * 3 2 1 5 5 H 1.48496 * 109.47264 * 34.98790 * 3 2 1 6 6 H 1.48505 * 109.46812 * 154.98742 * 3 2 1 7 7 C 1.40031 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00154 * 173.73875 * 7 2 1 9 9 C 1.41339 * 119.99919 * 353.74598 * 7 2 1 10 10 C 1.40605 * 119.78485 * 186.44106 * 9 7 2 11 11 C 1.38307 * 119.13234 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.66836 * 359.97438 * 11 10 9 13 13 C 1.39637 * 119.49462 * 0.02562 * 12 11 10 14 14 N 1.39250 * 119.57507 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00118 * 341.16273 * 14 13 12 16 16 O 1.21582 * 119.99999 * 354.20388 * 15 14 13 17 17 N 1.34770 * 120.00649 * 174.20584 * 15 14 13 18 18 C 1.46496 * 120.00830 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47693 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47491 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.57356 * 65.15553 * 20 19 18 22 22 C 1.53175 * 109.53528 * 185.30971 * 20 19 18 23 23 C 1.53179 * 109.04771 * 176.87545 * 22 20 19 24 24 C 1.53096 * 109.16211 * 303.02467 * 23 22 20 25 25 O 1.42903 * 109.41559 * 57.60876 * 24 23 22 26 26 C 1.42912 * 114.09499 * 298.84270 * 25 24 23 27 27 N 1.31932 * 120.85311 * 0.25249 * 13 12 11 28 28 H 0.97006 * 119.99010 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.43460 * 0.03891 * 10 9 7 30 30 H 1.07994 * 120.67081 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25251 * 179.97438 * 12 11 10 32 32 H 0.97003 * 120.00407 * 161.16361 * 14 13 12 33 33 H 0.97010 * 119.99748 * 0.02562 * 17 15 14 34 34 H 1.08999 * 109.47236 * 59.99211 * 18 17 15 35 35 H 1.09005 * 109.46585 * 300.00158 * 18 17 15 36 36 H 1.08999 * 109.47393 * 59.99345 * 19 18 17 37 37 H 1.09003 * 109.46760 * 299.99731 * 19 18 17 38 38 H 0.96703 * 114.00066 * 299.84321 * 21 20 19 39 39 H 1.08999 * 109.53729 * 57.00740 * 22 20 19 40 40 H 1.08999 * 109.54298 * 296.74650 * 22 20 19 41 41 H 1.09003 * 109.52188 * 183.11936 * 23 22 20 42 42 H 1.09000 * 109.52393 * 62.92526 * 23 22 20 43 43 H 1.09002 * 109.47855 * 297.62383 * 24 23 22 44 44 H 1.08998 * 109.47883 * 177.59438 * 24 23 22 45 45 H 1.08994 * 109.47590 * 181.13840 * 26 25 24 46 46 H 1.09003 * 109.47799 * 301.16229 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1072 -1.3947 5 1 1.4958 2.6199 0.8028 6 1 3.5879 1.4118 0.5920 7 6 2.0075 -1.2128 -0.0005 8 1 3.0827 -1.2156 -0.1025 9 6 1.3070 -2.4331 0.1323 10 6 2.0207 -3.6370 0.2676 11 6 1.3216 -4.8234 0.3961 12 6 -0.0647 -4.7831 0.3874 13 6 -0.7160 -3.5556 0.2496 14 7 -2.1078 -3.5132 0.2400 15 6 -2.8143 -4.6316 -0.0181 16 8 -2.2395 -5.6516 -0.3459 17 7 -4.1578 -4.6193 0.0870 18 6 -4.9257 -5.8350 -0.1931 19 6 -6.4169 -5.5521 -0.0008 20 6 -7.2189 -6.8216 -0.2940 21 8 -6.9007 -7.8232 0.6743 22 6 -8.7168 -6.5071 -0.2314 23 6 -9.5077 -7.7652 -0.6029 24 6 -9.0715 -8.2415 -1.9909 25 8 -7.6637 -8.4868 -1.9883 26 6 -6.8712 -7.3345 -1.6939 27 7 -0.0296 -2.4360 0.1229 28 1 -0.4849 0.8402 0.0004 29 1 3.1007 -3.6353 0.2715 30 1 1.8446 -5.7623 0.5020 31 1 -0.6362 -5.6942 0.4855 32 1 -2.5689 -2.6789 0.4192 33 1 -4.6165 -3.8054 0.3481 34 1 -4.6154 -6.6261 0.4895 35 1 -4.7449 -6.1503 -1.2208 36 1 -6.7276 -4.7608 -0.6831 37 1 -6.5974 -5.2371 1.0270 38 1 -5.9672 -8.0754 0.6871 39 1 -8.9511 -5.7081 -0.9349 40 1 -8.9819 -6.1947 0.7786 41 1 -10.5731 -7.5353 -0.6148 42 1 -9.3111 -8.5484 0.1293 43 1 -9.3054 -7.4739 -2.7287 44 1 -9.6002 -9.1608 -2.2425 45 1 -5.8149 -7.6007 -1.7315 46 1 -7.0761 -6.5552 -2.4279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364466571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:20 Heat of formation + Delta-G solvation = -109.237410 kcal Electronic energy + Delta-G solvation = -28439.127810 eV Core-core repulsion = 24327.937187 eV Total energy + Delta-G solvation = -4111.190624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66241 -40.97130 -39.69437 -37.78817 -36.24185 -35.81656 -35.08174 -34.04052 -32.77803 -32.30888 -31.00410 -29.21331 -27.36714 -26.31723 -25.32126 -23.62674 -23.46000 -22.36072 -21.84642 -21.04814 -19.78999 -19.12069 -18.26543 -18.06733 -17.44662 -17.12093 -16.67118 -16.63242 -16.33125 -16.07336 -16.00427 -15.66662 -15.42675 -15.25732 -14.93670 -14.63707 -14.36838 -14.16209 -13.97965 -13.79613 -13.56913 -12.99407 -12.93979 -12.90644 -12.76775 -12.65754 -12.56834 -12.36493 -12.11888 -11.84759 -11.82704 -11.59036 -11.36074 -11.19844 -11.05303 -10.81576 -10.20702 -10.16271 -9.95365 -9.62615 -8.92582 -8.30694 -6.49130 0.82691 1.13274 1.43583 1.52164 1.55002 1.59049 2.11430 2.25315 2.88148 2.89420 3.14093 3.26925 3.53404 3.73578 3.78404 3.92793 4.05766 4.08218 4.13643 4.23580 4.33575 4.44315 4.49225 4.57363 4.65050 4.70841 4.78922 4.84374 4.88885 4.93297 4.96780 4.98473 5.04861 5.09507 5.16094 5.25234 5.36754 5.41812 5.59433 5.69825 5.87887 5.98388 6.21669 6.22948 6.29663 6.75032 6.75190 6.90792 7.03705 7.49539 8.11408 8.45758 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002047 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.689807 B =13675.412773 C =14423.742020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.310 4.310 11 C -0.049 4.049 12 C -0.326 4.326 13 C 0.364 3.636 14 N -0.656 5.656 15 C 0.704 3.296 16 O -0.604 6.604 17 N -0.723 5.723 18 C 0.132 3.868 19 C -0.144 4.144 20 C 0.110 3.890 21 O -0.565 6.565 22 C -0.110 4.110 23 C -0.150 4.150 24 C 0.051 3.949 25 O -0.400 6.400 26 C 0.027 3.973 27 N -0.534 5.534 28 H 0.279 0.721 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.413 0.587 33 H 0.413 0.587 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.384 0.616 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.857 -6.802 -0.891 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.119 3.881 10 C -0.332 4.332 11 C -0.073 4.073 12 C -0.351 4.351 13 C 0.128 3.872 14 N -0.303 5.303 15 C 0.404 3.596 16 O -0.484 6.484 17 N -0.380 5.380 18 C 0.008 3.992 19 C -0.182 4.182 20 C 0.068 3.932 21 O -0.373 6.373 22 C -0.148 4.148 23 C -0.188 4.188 24 C -0.026 4.026 25 O -0.319 6.319 26 C -0.050 4.050 27 N -0.254 5.254 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.249 0.751 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.606 -6.974 -1.189 22.734 hybrid contribution 1.115 0.685 0.220 1.327 sum -20.491 -6.289 -0.969 21.456 Atomic orbital electron populations 1.70198 1.08761 1.29034 1.29551 1.26961 0.95819 1.04384 0.92432 0.85105 0.79116 0.75741 0.79179 1.18940 1.19146 1.18069 1.19928 0.95198 0.90249 1.44421 0.89099 1.18698 0.87119 0.93403 0.88925 1.21881 0.99557 0.93715 1.18071 1.21173 0.93693 0.97510 0.94927 1.21819 0.95106 0.98168 1.19966 1.18550 0.83815 0.91052 0.93782 1.42155 1.04122 1.12034 1.72025 1.15939 0.82631 0.82839 0.78200 1.90807 1.69646 1.33151 1.54783 1.44899 1.02968 1.15998 1.74129 1.21390 0.90555 0.86074 1.01154 1.22384 0.91768 0.99041 1.05023 1.21776 0.96291 0.86905 0.88214 1.86526 1.32586 1.59197 1.58954 1.21653 0.90939 0.98437 1.03722 1.22103 1.01004 0.98064 0.97599 1.22808 0.80887 1.02355 0.96508 1.87949 1.18317 1.34520 1.91089 1.23504 0.96212 0.89397 0.95897 1.68047 1.08640 1.25711 1.22953 0.91010 0.86902 0.85234 0.84788 0.75067 0.75044 0.91919 0.91755 0.88068 0.89085 0.76663 0.88495 0.90408 0.88938 0.92222 0.91852 0.88206 0.88716 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.11 11.49 21.84 0.25 -38.86 16 2 C 0.03 1.29 5.49 85.29 0.47 1.76 16 3 Si 0.99 37.31 29.56 68.60 2.03 39.34 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.47 -25.28 9.13 23.47 0.21 -25.06 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.25 13.86 6.54 40.20 0.26 14.13 16 10 C -0.31 -15.90 9.83 22.86 0.22 -15.68 16 11 C -0.05 -2.33 10.15 22.40 0.23 -2.10 16 12 C -0.33 -16.28 8.83 22.72 0.20 -16.07 16 13 C 0.36 18.44 7.51 133.24 1.00 19.44 16 14 N -0.66 -26.31 5.42 -322.14 -1.75 -28.06 16 15 C 0.70 25.25 8.40 179.06 1.50 26.75 16 16 O -0.60 -26.15 13.14 -3.97 -0.05 -26.20 16 17 N -0.72 -16.78 5.56 -478.57 -2.66 -19.44 16 18 C 0.13 2.46 4.98 86.38 0.43 2.89 16 19 C -0.14 -1.72 4.63 30.59 0.14 -1.58 16 20 C 0.11 1.53 0.76 -10.71 -0.01 1.52 16 21 O -0.56 -10.11 12.39 -141.84 -1.76 -11.87 16 22 C -0.11 -1.25 5.04 30.71 0.15 -1.10 16 23 C -0.15 -1.83 5.98 30.69 0.18 -1.65 16 24 C 0.05 0.68 6.84 72.01 0.49 1.17 16 25 O -0.40 -7.85 10.70 -141.84 -1.52 -9.37 16 26 C 0.03 0.42 5.20 72.01 0.37 0.80 16 27 N -0.53 -29.79 7.92 -186.37 -1.48 -31.26 16 28 H 0.28 12.93 8.29 -92.70 -0.77 12.16 16 29 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 30 H 0.13 5.23 8.06 -2.91 -0.02 5.21 16 31 H 0.13 6.63 5.33 -3.15 -0.02 6.61 16 32 H 0.41 14.59 8.84 -92.71 -0.82 13.77 16 33 H 0.41 7.01 8.49 -92.70 -0.79 6.22 16 34 H 0.06 1.26 6.90 -2.39 -0.02 1.24 16 35 H 0.06 1.31 6.41 -2.38 -0.02 1.29 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.38 5.66 7.55 -74.06 -0.56 5.10 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.99 7.83 -2.39 -0.02 0.97 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.59 6.50 -2.39 -0.02 1.58 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.03 372.07 -2.18 -76.21 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -1.12 Total: 44.31 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.87 Total: 5.21 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -5.63 Total: -117.62 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -3.33 Total: -47.44 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -74.03 -2.18 -76.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364466571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.030 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds