Wall clock time and date at job start Tue Mar 31 2020 18:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48501 * 109.46940 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99525 * 3 2 1 6 6 H 1.48496 * 109.47534 * 149.99847 * 3 2 1 7 7 C 1.40029 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78952 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12676 * 179.97438 * 10 9 7 12 12 C 1.38678 * 118.67591 * 359.74701 * 11 10 9 13 13 C 1.39646 * 119.49395 * 0.49936 * 12 11 10 14 14 N 1.39248 * 119.57782 * 179.76387 * 13 12 11 15 15 C 1.34778 * 120.00628 * 185.40640 * 14 13 12 16 16 O 1.21579 * 119.99524 * 354.86281 * 15 14 13 17 17 N 1.34767 * 120.00245 * 174.86208 * 15 14 13 18 18 C 1.46501 * 120.00045 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47226 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47213 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.51896 * 300.00069 * 20 19 18 22 22 C 1.53171 * 109.52552 * 179.87433 * 20 19 18 23 23 C 1.53175 * 109.03957 * 183.04769 * 22 20 19 24 24 C 1.53099 * 109.16122 * 56.98164 * 23 22 20 25 25 O 1.42901 * 109.41269 * 302.39343 * 24 23 22 26 26 C 1.42901 * 114.09918 * 61.15735 * 25 24 23 27 27 N 1.31933 * 120.85164 * 359.49047 * 13 12 11 28 28 H 0.96992 * 120.00233 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.43526 * 359.95736 * 10 9 7 30 30 H 1.07999 * 120.66132 * 180.02562 * 11 10 9 31 31 H 1.07998 * 120.25634 * 180.24748 * 12 11 10 32 32 H 0.97006 * 119.99874 * 5.41375 * 14 13 12 33 33 H 0.96998 * 120.00670 * 359.97438 * 17 15 14 34 34 H 1.08996 * 109.47183 * 59.99288 * 18 17 15 35 35 H 1.09004 * 109.47006 * 300.00074 * 18 17 15 36 36 H 1.09001 * 109.47474 * 60.00096 * 19 18 17 37 37 H 1.08994 * 109.47516 * 299.99475 * 19 18 17 38 38 H 0.96699 * 114.00068 * 59.87864 * 21 20 19 39 39 H 1.09004 * 109.54659 * 302.92257 * 22 20 19 40 40 H 1.09009 * 109.54556 * 63.09081 * 22 20 19 41 41 H 1.09002 * 109.52450 * 176.88477 * 23 22 20 42 42 H 1.08998 * 109.52336 * 297.01603 * 23 22 20 43 43 H 1.09003 * 109.47964 * 62.37281 * 24 23 22 44 44 H 1.08997 * 109.47777 * 182.40832 * 24 23 22 45 45 H 1.09002 * 109.48003 * 178.86270 * 26 25 24 46 46 H 1.08998 * 109.48446 * 58.82734 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6517 0.0016 11 6 1.3033 -4.8415 0.0022 12 6 -0.0827 -4.7935 0.0070 13 6 -0.7277 -3.5550 0.0005 14 7 -2.1193 -3.5048 0.0003 15 6 -2.7510 -2.3199 -0.1158 16 8 -2.1092 -1.2874 -0.1264 17 7 -4.0940 -2.2796 -0.2202 18 6 -4.7806 -0.9916 -0.3470 19 6 -6.2891 -1.2257 -0.4487 20 6 -7.0062 0.1195 -0.5805 21 8 -6.7259 0.9244 0.5665 22 6 -8.5164 -0.1135 -0.6856 23 6 -9.2165 1.2329 -0.8935 24 6 -8.6447 1.9091 -2.1423 25 8 -7.2326 2.0681 -1.9919 26 6 -6.5198 0.8387 -1.8414 27 7 -0.0357 -2.4317 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 3.0885 -3.6559 0.0018 30 1 1.8216 -5.7890 0.0034 31 1 -0.6588 -5.7070 0.0115 32 1 -2.6341 -4.3227 0.0839 33 1 -4.6061 -3.1033 -0.2121 34 1 -4.4312 -0.4804 -1.2440 35 1 -4.5659 -0.3778 0.5278 36 1 -6.6388 -1.7370 0.4481 37 1 -6.5035 -1.8392 -1.3237 38 1 -5.7860 1.1122 0.6951 39 1 -8.7264 -0.7682 -1.5315 40 1 -8.8787 -0.5765 0.2324 41 1 -10.2864 1.0708 -1.0246 42 1 -9.0483 1.8689 -0.0244 43 1 -8.8499 1.2911 -3.0165 44 1 -9.1090 2.8868 -2.2710 45 1 -5.4531 1.0454 -1.7533 46 1 -6.6971 0.2067 -2.7116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364466572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:24 Heat of formation + Delta-G solvation = -67.869197 kcal Electronic energy + Delta-G solvation = -29196.363003 eV Core-core repulsion = 25086.966239 eV Total energy + Delta-G solvation = -4109.396763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33009 -39.40346 -37.76992 -36.84067 -34.65776 -33.90313 -33.32013 -32.96589 -31.68072 -30.26363 -29.22313 -28.05708 -25.57345 -25.49270 -24.26075 -22.15799 -21.46826 -21.10403 -20.35897 -19.81723 -18.06114 -17.31310 -17.11622 -16.66879 -16.17237 -16.00352 -15.42837 -15.11562 -14.79807 -14.57210 -14.44185 -14.31003 -14.04192 -13.67297 -13.52269 -13.21248 -13.08333 -12.90097 -12.77239 -12.17401 -12.10152 -11.96213 -11.90078 -11.45646 -11.39210 -11.12655 -11.11016 -10.92185 -10.62374 -10.61926 -10.43749 -10.41302 -9.90270 -9.67756 -9.44497 -9.12416 -9.00231 -8.51132 -7.92858 -7.19296 -6.92349 -6.08406 -4.36346 2.86575 3.14981 3.19028 3.20362 3.22446 3.30144 3.60616 3.97774 4.09806 4.21363 4.33044 4.41629 4.45797 4.67941 4.74563 4.94247 4.95319 4.99159 5.05445 5.09012 5.24155 5.32633 5.42193 5.48227 5.56454 5.65810 5.79610 5.90975 5.95017 6.02476 6.07741 6.12339 6.49614 6.62298 6.81077 6.87116 6.90066 6.96139 7.26045 7.36682 7.50656 7.64228 7.75580 7.84027 8.19575 8.31949 8.66704 8.82435 9.08937 9.58860 10.29519 10.52542 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002943 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.706712 B = 9511.609671 C =11245.164345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.662 3.338 16 O -0.462 6.462 17 N -0.760 5.760 18 C 0.140 3.860 19 C -0.157 4.157 20 C 0.109 3.891 21 O -0.550 6.550 22 C -0.107 4.107 23 C -0.153 4.153 24 C 0.058 3.942 25 O -0.372 6.372 26 C 0.031 3.969 27 N -0.471 5.471 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.394 0.606 33 H 0.384 0.616 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.381 0.619 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 -0.607 -2.763 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.146 3.854 14 N -0.322 5.322 15 C 0.360 3.640 16 O -0.325 6.325 17 N -0.420 5.420 18 C 0.015 3.985 19 C -0.195 4.195 20 C 0.067 3.933 21 O -0.357 6.357 22 C -0.145 4.145 23 C -0.190 4.190 24 C -0.019 4.019 25 O -0.290 6.290 26 C -0.046 4.046 27 N -0.190 5.190 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.227 0.773 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.583 1.591 -2.726 19.836 hybrid contribution 0.711 -1.427 -0.029 1.594 sum -18.872 0.164 -2.755 19.073 Atomic orbital electron populations 1.70346 1.05596 1.27271 1.23499 1.26188 0.95149 1.00516 0.95435 0.86545 0.80574 0.82020 0.78991 1.19698 1.20322 1.18803 1.19575 0.94030 0.89384 1.42540 0.90002 1.18400 0.87170 0.91961 0.87933 1.21621 0.98536 0.93545 1.19266 1.20539 0.93125 0.96511 0.95843 1.20427 0.94758 0.94778 1.28533 1.18341 0.82430 0.90906 0.93677 1.42549 1.05255 1.07915 1.76435 1.16444 0.81299 0.85556 0.80653 1.91393 1.62269 1.29855 1.49012 1.45232 1.05875 1.08293 1.82604 1.21038 0.89508 0.86014 1.01919 1.22454 0.95276 0.98042 1.03742 1.21688 0.95568 0.89339 0.86707 1.86511 1.31182 1.72281 1.45717 1.21568 0.92393 0.97715 1.02814 1.22129 0.99646 0.97239 1.00011 1.22605 0.81882 1.01248 0.96166 1.87994 1.18431 1.29167 1.93391 1.23425 0.97669 0.86931 0.96568 1.68697 1.06858 1.23105 1.20330 0.91685 0.88599 0.88652 0.89204 0.77277 0.78362 0.91767 0.91835 0.90126 0.90367 0.76948 0.90611 0.90597 0.91062 0.90085 0.93433 0.88939 0.87783 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.10 8.99 55.55 0.50 -17.60 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.89 19.45 29.56 -169.99 -5.02 14.42 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.42 -11.80 9.14 -37.74 -0.34 -12.15 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.68 6.55 -85.00 -0.56 7.13 16 10 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.11 9.95 -38.89 -0.39 -8.49 16 13 C 0.39 9.50 7.43 -154.98 -1.15 8.34 16 14 N -0.67 -13.27 5.39 -15.79 -0.09 -13.36 16 15 C 0.66 13.35 8.52 -86.93 -0.74 12.61 16 16 O -0.46 -11.63 12.11 5.30 0.06 -11.57 16 17 N -0.76 -10.63 5.56 -65.23 -0.36 -11.00 16 18 C 0.14 1.72 5.02 -4.04 -0.02 1.70 16 19 C -0.16 -1.37 4.61 -26.73 -0.12 -1.49 16 20 C 0.11 1.02 0.76 -90.48 -0.07 0.95 16 21 O -0.55 -6.14 12.36 -42.72 -0.53 -6.67 16 22 C -0.11 -0.86 5.04 -26.55 -0.13 -0.99 16 23 C -0.15 -1.22 5.98 -26.59 -0.16 -1.38 16 24 C 0.06 0.49 6.84 37.21 0.25 0.75 16 25 O -0.37 -4.33 10.70 -42.72 -0.46 -4.78 16 26 C 0.03 0.32 5.36 37.20 0.20 0.51 16 27 N -0.47 -13.36 5.74 -10.26 -0.06 -13.42 16 28 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 29 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.39 5.92 8.72 -40.82 -0.36 5.57 16 33 H 0.38 4.06 8.49 -40.82 -0.35 3.72 16 34 H 0.06 0.86 6.50 -51.93 -0.34 0.53 16 35 H 0.06 0.85 6.78 -51.93 -0.35 0.50 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.38 3.79 7.34 45.56 0.33 4.12 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.79 7.83 -51.93 -0.41 0.39 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.12 6.58 -51.93 -0.34 0.77 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -35.03 370.06 -10.49 -45.52 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.00 Total: 13.38 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -4.11 Total: -0.51 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.01 Total: -55.38 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.92 Total: -23.02 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.03 -10.49 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364466572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.349 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds