Wall clock time and date at job start Tue Mar 31 2020 18:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48501 * 109.46940 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99525 * 3 2 1 6 6 H 1.48496 * 109.47534 * 149.99847 * 3 2 1 7 7 C 1.40029 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78952 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12676 * 179.97438 * 10 9 7 12 12 C 1.38678 * 118.67591 * 359.74701 * 11 10 9 13 13 C 1.39646 * 119.49395 * 0.49936 * 12 11 10 14 14 N 1.39248 * 119.57782 * 179.76387 * 13 12 11 15 15 C 1.34778 * 120.00628 * 185.40640 * 14 13 12 16 16 O 1.21579 * 119.99524 * 354.86281 * 15 14 13 17 17 N 1.34767 * 120.00245 * 174.86208 * 15 14 13 18 18 C 1.46501 * 120.00045 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47226 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47213 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.51896 * 300.00069 * 20 19 18 22 22 C 1.53171 * 109.52552 * 179.87433 * 20 19 18 23 23 C 1.53175 * 109.03957 * 183.04769 * 22 20 19 24 24 C 1.53099 * 109.16122 * 56.98164 * 23 22 20 25 25 O 1.42901 * 109.41269 * 302.39343 * 24 23 22 26 26 C 1.42901 * 114.09918 * 61.15735 * 25 24 23 27 27 N 1.31933 * 120.85164 * 359.49047 * 13 12 11 28 28 H 0.96992 * 120.00233 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.43526 * 359.95736 * 10 9 7 30 30 H 1.07999 * 120.66132 * 180.02562 * 11 10 9 31 31 H 1.07998 * 120.25634 * 180.24748 * 12 11 10 32 32 H 0.97006 * 119.99874 * 5.41375 * 14 13 12 33 33 H 0.96998 * 120.00670 * 359.97438 * 17 15 14 34 34 H 1.08996 * 109.47183 * 59.99288 * 18 17 15 35 35 H 1.09004 * 109.47006 * 300.00074 * 18 17 15 36 36 H 1.09001 * 109.47474 * 60.00096 * 19 18 17 37 37 H 1.08994 * 109.47516 * 299.99475 * 19 18 17 38 38 H 0.96699 * 114.00068 * 59.87864 * 21 20 19 39 39 H 1.09004 * 109.54659 * 302.92257 * 22 20 19 40 40 H 1.09009 * 109.54556 * 63.09081 * 22 20 19 41 41 H 1.09002 * 109.52450 * 176.88477 * 23 22 20 42 42 H 1.08998 * 109.52336 * 297.01603 * 23 22 20 43 43 H 1.09003 * 109.47964 * 62.37281 * 24 23 22 44 44 H 1.08997 * 109.47777 * 182.40832 * 24 23 22 45 45 H 1.09002 * 109.48003 * 178.86270 * 26 25 24 46 46 H 1.08998 * 109.48446 * 58.82734 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6517 0.0016 11 6 1.3033 -4.8415 0.0022 12 6 -0.0827 -4.7935 0.0070 13 6 -0.7277 -3.5550 0.0005 14 7 -2.1193 -3.5048 0.0003 15 6 -2.7510 -2.3199 -0.1158 16 8 -2.1092 -1.2874 -0.1264 17 7 -4.0940 -2.2796 -0.2202 18 6 -4.7806 -0.9916 -0.3470 19 6 -6.2891 -1.2257 -0.4487 20 6 -7.0062 0.1195 -0.5805 21 8 -6.7259 0.9244 0.5665 22 6 -8.5164 -0.1135 -0.6856 23 6 -9.2165 1.2329 -0.8935 24 6 -8.6447 1.9091 -2.1423 25 8 -7.2326 2.0681 -1.9919 26 6 -6.5198 0.8387 -1.8414 27 7 -0.0357 -2.4317 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 3.0885 -3.6559 0.0018 30 1 1.8216 -5.7890 0.0034 31 1 -0.6588 -5.7070 0.0115 32 1 -2.6341 -4.3227 0.0839 33 1 -4.6061 -3.1033 -0.2121 34 1 -4.4312 -0.4804 -1.2440 35 1 -4.5659 -0.3778 0.5278 36 1 -6.6388 -1.7370 0.4481 37 1 -6.5035 -1.8392 -1.3237 38 1 -5.7860 1.1122 0.6951 39 1 -8.7264 -0.7682 -1.5315 40 1 -8.8787 -0.5765 0.2324 41 1 -10.2864 1.0708 -1.0246 42 1 -9.0483 1.8689 -0.0244 43 1 -8.8499 1.2911 -3.0165 44 1 -9.1090 2.8868 -2.2710 45 1 -5.4531 1.0454 -1.7533 46 1 -6.6971 0.2067 -2.7116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364466572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:23 Heat of formation + Delta-G solvation = -94.084728 kcal Electronic energy + Delta-G solvation = -29197.499793 eV Core-core repulsion = 25086.966239 eV Total energy + Delta-G solvation = -4110.533554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26939 -40.85590 -39.48966 -37.74297 -36.07610 -35.52099 -34.81067 -34.03352 -32.66340 -32.16205 -30.87135 -29.15664 -27.40669 -26.27936 -25.24307 -23.74104 -23.05380 -22.28585 -21.46163 -21.02612 -19.78648 -18.74949 -18.19179 -17.95736 -17.34689 -16.91926 -16.55363 -16.42060 -16.24652 -16.03962 -15.68806 -15.44498 -15.33948 -15.25747 -14.66610 -14.58398 -14.33538 -14.11357 -13.79700 -13.67444 -13.55861 -12.92939 -12.89670 -12.74923 -12.70809 -12.53685 -12.31173 -12.28821 -12.13207 -11.82459 -11.75357 -11.49175 -11.34609 -11.18232 -10.84871 -10.82886 -10.18828 -9.90647 -9.80858 -9.09265 -8.76247 -8.00577 -6.39077 0.98556 1.30271 1.40523 1.52314 1.54897 1.81120 2.27893 2.58274 2.88403 3.05785 3.26153 3.35356 3.56901 3.74192 3.83801 4.05738 4.08415 4.11672 4.18751 4.26343 4.37820 4.44133 4.53416 4.57797 4.71381 4.75068 4.81414 4.85073 4.88834 4.98378 4.98656 5.06481 5.08766 5.10942 5.16590 5.29837 5.37065 5.66617 5.70774 5.87981 5.94474 6.05942 6.22076 6.33896 6.44628 6.70736 6.84013 7.09603 7.28452 8.03496 8.40288 8.60161 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002943 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.706712 B = 9511.609671 C =11245.164345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.364 3.636 14 N -0.661 5.661 15 C 0.655 3.345 16 O -0.516 6.516 17 N -0.735 5.735 18 C 0.141 3.859 19 C -0.139 4.139 20 C 0.108 3.892 21 O -0.566 6.566 22 C -0.108 4.108 23 C -0.150 4.150 24 C 0.050 3.950 25 O -0.401 6.401 26 C 0.029 3.971 27 N -0.506 5.506 28 H 0.269 0.731 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.418 0.582 33 H 0.406 0.594 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.382 0.618 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.836 -2.504 -3.230 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.215 4.215 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.312 5.312 15 C 0.353 3.647 16 O -0.384 6.384 17 N -0.396 5.396 18 C 0.017 3.983 19 C -0.177 4.177 20 C 0.066 3.934 21 O -0.374 6.374 22 C -0.145 4.145 23 C -0.187 4.187 24 C -0.026 4.026 25 O -0.320 6.320 26 C -0.048 4.048 27 N -0.226 5.226 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.255 0.745 33 H 0.242 0.758 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.474 -0.383 -3.193 21.714 hybrid contribution 1.163 -1.010 0.101 1.544 sum -20.311 -1.393 -3.092 20.592 Atomic orbital electron populations 1.70550 1.07068 1.27774 1.24839 1.27018 0.96032 1.03854 0.94611 0.85373 0.79174 0.77069 0.79090 1.19155 1.19906 1.17972 1.19885 0.94390 0.90492 1.44956 0.89724 1.18891 0.87993 0.93399 0.88679 1.21802 0.99183 0.93870 1.20577 1.21024 0.93542 0.97302 0.93949 1.20916 0.95123 0.95578 1.25514 1.18856 0.84267 0.91069 0.93422 1.42382 1.03846 1.09077 1.75882 1.16760 0.82853 0.84904 0.80210 1.91385 1.64034 1.31649 1.51285 1.44924 1.03828 1.10040 1.80770 1.21105 0.91799 0.84856 1.00586 1.22333 0.91909 0.98155 1.05275 1.21828 0.96830 0.89038 0.85672 1.86497 1.31377 1.72874 1.46665 1.21646 0.90832 0.98067 1.03972 1.22100 1.01093 0.96820 0.98718 1.22821 0.80376 1.02271 0.97109 1.87950 1.20236 1.30217 1.93639 1.23447 0.96797 0.86913 0.97659 1.68660 1.07180 1.25363 1.21374 0.92068 0.87838 0.84489 0.84975 0.74528 0.75806 0.93183 0.93455 0.89139 0.88006 0.76893 0.88239 0.90315 0.88693 0.92445 0.91671 0.88246 0.89528 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.05 8.99 21.84 0.20 -39.85 16 2 C 0.01 0.59 5.50 85.29 0.47 1.06 16 3 Si 0.97 41.57 29.56 68.60 2.03 43.60 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.47 -27.04 9.14 23.47 0.21 -26.82 16 8 H 0.08 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.24 13.86 6.55 40.20 0.26 14.12 16 10 C -0.33 -16.95 9.83 22.87 0.22 -16.73 16 11 C -0.03 -1.48 10.15 22.39 0.23 -1.26 16 12 C -0.35 -14.74 9.95 22.72 0.23 -14.52 16 13 C 0.36 17.73 7.43 133.24 0.99 18.72 16 14 N -0.66 -25.35 5.39 -322.14 -1.74 -27.09 16 15 C 0.65 26.44 8.52 179.06 1.53 27.97 16 16 O -0.52 -27.03 12.11 -3.96 -0.05 -27.08 16 17 N -0.73 -19.71 5.56 -478.56 -2.66 -22.38 16 18 C 0.14 3.42 5.02 86.38 0.43 3.86 16 19 C -0.14 -2.13 4.61 30.60 0.14 -1.98 16 20 C 0.11 1.88 0.76 -10.70 -0.01 1.87 16 21 O -0.57 -12.77 12.36 -141.82 -1.75 -14.52 16 22 C -0.11 -1.45 5.04 30.71 0.15 -1.30 16 23 C -0.15 -2.14 5.98 30.69 0.18 -1.96 16 24 C 0.05 0.79 6.84 72.02 0.49 1.28 16 25 O -0.40 -9.28 10.70 -141.82 -1.52 -10.80 16 26 C 0.03 0.57 5.36 72.01 0.39 0.96 16 27 N -0.51 -29.52 5.74 -186.37 -1.07 -30.59 16 28 H 0.27 14.88 8.29 -92.71 -0.77 14.11 16 29 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.42 11.43 8.72 -92.70 -0.81 10.62 16 33 H 0.41 7.45 8.49 -92.71 -0.79 6.66 16 34 H 0.05 1.39 6.50 -2.39 -0.02 1.37 16 35 H 0.05 1.32 6.78 -2.39 -0.02 1.30 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.38 8.13 7.34 -74.06 -0.54 7.59 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.10 7.83 -2.39 -0.02 1.08 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.97 6.58 -2.39 -0.02 1.95 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -80.69 370.06 -1.74 -82.43 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -1.10 Total: 41.01 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.92 Total: 5.28 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -5.27 Total: -119.91 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -3.32 Total: -52.40 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -80.69 -1.74 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364466572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.658 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds