Wall clock time and date at job start Tue Mar 31 2020 18:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86802 * 119.99830 * 2 1 4 4 H 1.48500 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47263 * 300.00103 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00107 * 3 2 1 7 7 C 1.40022 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.41334 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78778 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12691 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.67461 * 359.72886 * 11 10 9 13 13 C 1.39642 * 119.49515 * 0.55611 * 12 11 10 14 14 N 1.39251 * 119.57619 * 179.70705 * 13 12 11 15 15 C 1.34782 * 119.99924 * 185.40551 * 14 13 12 16 16 O 1.21581 * 119.99999 * 354.86010 * 15 14 13 17 17 N 1.34770 * 119.99968 * 174.85387 * 15 14 13 18 18 C 1.46503 * 120.00181 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47375 * 180.02562 * 18 17 15 20 20 H 1.09005 * 109.47200 * 305.00403 * 19 18 17 21 21 O 1.42894 * 109.47213 * 64.99889 * 19 18 17 22 22 C 1.53005 * 109.47265 * 185.00182 * 19 18 17 23 23 C 1.53175 * 109.54326 * 299.55780 * 22 19 18 24 24 C 1.53087 * 109.16304 * 183.15237 * 23 22 19 25 25 O 1.42905 * 109.41388 * 57.60529 * 24 23 22 26 26 C 1.42900 * 114.10130 * 298.84018 * 25 24 23 27 27 C 1.53094 * 109.41291 * 61.16150 * 26 25 24 28 28 N 1.31932 * 120.84721 * 359.43329 * 13 12 11 29 29 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43671 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66271 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.25862 * 180.27911 * 12 11 10 33 33 H 0.96996 * 119.99895 * 5.40395 * 14 13 12 34 34 H 0.97003 * 120.00332 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46828 * 60.00626 * 18 17 15 36 36 H 1.09000 * 109.47165 * 300.00600 * 18 17 15 37 37 H 0.96703 * 114.00035 * 60.00612 * 21 19 18 38 38 H 1.09004 * 109.54007 * 59.82109 * 22 19 18 39 39 H 1.08999 * 109.51682 * 303.05609 * 23 22 19 40 40 H 1.08999 * 109.52113 * 63.24333 * 23 22 19 41 41 H 1.09002 * 109.47794 * 297.62639 * 24 23 22 42 42 H 1.08994 * 109.48204 * 177.58753 * 24 23 22 43 43 H 1.09000 * 109.47967 * 301.18059 * 26 25 24 44 44 H 1.08996 * 109.48620 * 181.14050 * 26 25 24 45 45 H 1.09004 * 109.52227 * 182.49096 * 27 26 25 46 46 H 1.08991 * 109.52384 * 62.29298 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6517 -0.0016 11 6 1.3032 -4.8415 -0.0022 12 6 -0.0828 -4.7934 0.0042 13 6 -0.7279 -3.5549 -0.0009 14 7 -2.1195 -3.5047 -0.0008 15 6 -2.7511 -2.3196 -0.1156 16 8 -2.1092 -1.2871 -0.1253 17 7 -4.0941 -2.2792 -0.2199 18 6 -4.7808 -0.9910 -0.3441 19 6 -6.2894 -1.2248 -0.4450 20 1 -6.4968 -1.9091 -1.2677 21 8 -6.7664 -1.7910 0.7772 22 6 -6.9962 0.1081 -0.6996 23 6 -6.7148 1.0673 0.4611 24 6 -7.4889 2.3688 0.2364 25 8 -8.8832 2.0781 0.1203 26 6 -9.2117 1.2235 -0.9768 27 6 -8.5069 -0.1241 -0.8009 28 7 -0.0357 -2.4317 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 3.0884 -3.6559 -0.0029 31 1 1.8214 -5.7890 -0.0026 32 1 -0.6590 -5.7069 0.0085 33 1 -2.6342 -4.3227 0.0819 34 1 -4.6063 -3.1029 -0.2119 35 1 -4.4315 -0.4781 -1.2404 36 1 -4.5660 -0.3788 0.5318 37 1 -6.6152 -1.2349 1.5537 38 1 -6.6308 0.5426 -1.6302 39 1 -7.0350 0.6099 1.3972 40 1 -5.6470 1.2816 0.5058 41 1 -7.1396 2.8460 -0.6792 42 1 -7.3263 3.0387 1.0806 43 1 -8.8849 1.6858 -1.9083 44 1 -10.2902 1.0683 -1.0066 45 1 -8.7207 -0.7618 -1.6588 46 1 -8.8632 -0.6054 0.1097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366532861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:39 Heat of formation + Delta-G solvation = -72.220578 kcal Electronic energy + Delta-G solvation = -29162.338280 eV Core-core repulsion = 25052.752827 eV Total energy + Delta-G solvation = -4109.585453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21884 -39.35545 -37.97857 -37.29000 -34.22369 -33.68832 -33.52822 -32.95003 -31.43868 -30.27169 -29.46753 -28.31778 -25.63991 -25.01620 -23.92725 -22.36500 -21.68739 -21.11747 -20.27435 -19.68759 -18.02206 -17.44056 -16.99847 -16.42332 -16.15850 -15.96754 -15.80826 -15.03749 -14.99922 -14.69417 -14.53310 -14.39251 -14.10736 -13.83940 -13.64084 -13.13042 -12.94258 -12.77934 -12.64939 -12.56084 -11.93886 -11.87715 -11.80340 -11.62478 -11.35829 -11.15946 -10.91791 -10.89093 -10.60669 -10.59859 -10.44402 -10.24135 -9.88756 -9.71212 -9.67533 -9.09679 -9.00394 -8.45626 -7.92370 -7.18365 -6.90830 -6.08600 -4.36296 2.85818 3.14913 3.18453 3.21930 3.22288 3.29020 3.59394 4.08539 4.12786 4.23606 4.30485 4.39336 4.47178 4.67897 4.83722 4.87184 4.92517 4.97783 5.08135 5.11661 5.22614 5.38733 5.39104 5.42657 5.55146 5.71255 5.76872 5.81367 5.95153 6.05731 6.08484 6.13055 6.50986 6.64438 6.82909 6.87881 6.89847 6.97480 7.26318 7.38879 7.40791 7.65253 7.77753 7.84713 8.20487 8.33283 8.69733 8.83347 9.09293 9.62443 10.30199 10.52220 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.002966 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.440289 B = 9437.137345 C =11337.652816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.663 3.337 16 O -0.465 6.465 17 N -0.756 5.756 18 C 0.115 3.885 19 C 0.103 3.897 20 H 0.104 0.896 21 O -0.556 6.556 22 C -0.118 4.118 23 C -0.160 4.160 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.060 3.940 27 C -0.146 4.146 28 N -0.471 5.471 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.387 0.613 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.375 0.625 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.930 1.594 -1.373 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.147 3.853 14 N -0.321 5.321 15 C 0.361 3.639 16 O -0.329 6.329 17 N -0.416 5.416 18 C -0.011 4.011 19 C 0.044 3.956 20 H 0.122 0.878 21 O -0.363 6.363 22 C -0.138 4.138 23 C -0.198 4.198 24 C -0.015 4.015 25 O -0.304 6.304 26 C -0.017 4.017 27 C -0.183 4.183 28 N -0.190 5.190 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.220 0.780 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.223 0.777 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.247 3.219 -1.671 18.604 hybrid contribution 0.715 -0.688 0.121 1.000 sum -17.532 2.531 -1.550 17.782 Atomic orbital electron populations 1.70380 1.05573 1.27031 1.23746 1.26195 0.95132 1.00508 0.95428 0.86497 0.80985 0.82426 0.78283 1.18613 1.20140 1.20123 1.19599 0.94040 0.89364 1.42617 0.89972 1.18412 0.87187 0.91971 0.87889 1.21623 0.98528 0.93550 1.19267 1.20542 0.93123 0.96517 0.95850 1.20444 0.94763 0.94826 1.28379 1.18347 0.82473 0.90883 0.93587 1.42553 1.05209 1.07970 1.76411 1.16449 0.81346 0.85504 0.80611 1.91384 1.62388 1.29873 1.49241 1.45157 1.05703 1.08394 1.82370 1.21733 0.90625 0.86094 1.02626 1.22160 0.91223 0.94316 0.87931 0.87820 1.86556 1.83433 1.49291 1.16984 1.21822 0.96109 0.96048 0.99784 1.22342 1.01806 0.96699 0.98933 1.22561 0.81142 0.95958 1.01796 1.87933 1.24255 1.67878 1.50294 1.22591 1.00066 0.89761 0.89281 1.22159 0.94585 0.97967 1.03626 1.68695 1.06841 1.23133 1.20334 0.91847 0.88603 0.88640 0.89165 0.77225 0.77988 0.91266 0.91566 0.77654 0.89846 0.90794 0.89765 0.93037 0.88720 0.93312 0.88976 0.90884 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.13 8.99 55.55 0.50 -17.63 16 2 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 3 Si 0.89 19.35 29.56 -169.99 -5.02 14.33 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.43 -11.85 9.14 -37.74 -0.34 -12.19 16 8 H 0.08 2.15 7.85 -52.48 -0.41 1.73 16 9 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 10 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.18 9.95 -38.89 -0.39 -8.57 16 13 C 0.39 9.62 7.43 -154.98 -1.15 8.47 16 14 N -0.67 -13.59 5.39 -15.79 -0.09 -13.68 16 15 C 0.66 13.65 8.52 -86.92 -0.74 12.91 16 16 O -0.46 -11.84 12.11 5.29 0.06 -11.78 16 17 N -0.76 -11.11 5.51 -65.23 -0.36 -11.47 16 18 C 0.11 1.44 4.82 -4.04 -0.02 1.42 16 19 C 0.10 0.94 2.81 -26.73 -0.07 0.87 16 20 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 21 O -0.56 -5.36 12.52 -35.23 -0.44 -5.80 16 22 C -0.12 -0.94 2.16 -90.43 -0.20 -1.14 16 23 C -0.16 -1.30 4.74 -26.60 -0.13 -1.42 16 24 C 0.06 0.52 6.84 37.20 0.25 0.77 16 25 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 26 C 0.06 0.46 6.84 37.21 0.25 0.71 16 27 C -0.15 -1.09 5.32 -26.59 -0.14 -1.23 16 28 N -0.47 -13.45 5.74 -10.26 -0.06 -13.51 16 29 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 30 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.39 6.20 8.71 -40.82 -0.36 5.85 16 34 H 0.39 4.69 8.49 -40.82 -0.35 4.34 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.90 6.80 -51.93 -0.35 0.54 16 37 H 0.37 3.00 7.26 45.56 0.33 3.33 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.58 6.63 -51.93 -0.34 0.23 16 40 H 0.08 0.73 6.75 -51.93 -0.35 0.38 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.69 7.60 -51.93 -0.39 0.29 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -34.51 370.20 -10.32 -44.83 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.01 Total: 13.56 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -4.10 Total: -0.28 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.00 Total: -56.28 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.76 Total: -21.74 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.51 -10.32 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366532861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.390 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds