Wall clock time and date at job start Tue Mar 31 2020 18:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86802 * 119.99830 * 2 1 4 4 H 1.48500 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47263 * 300.00103 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00107 * 3 2 1 7 7 C 1.40022 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.41334 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78778 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12691 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.67461 * 359.72886 * 11 10 9 13 13 C 1.39642 * 119.49515 * 0.55611 * 12 11 10 14 14 N 1.39251 * 119.57619 * 179.70705 * 13 12 11 15 15 C 1.34782 * 119.99924 * 185.40551 * 14 13 12 16 16 O 1.21581 * 119.99999 * 354.86010 * 15 14 13 17 17 N 1.34770 * 119.99968 * 174.85387 * 15 14 13 18 18 C 1.46503 * 120.00181 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47375 * 180.02562 * 18 17 15 20 20 H 1.09005 * 109.47200 * 305.00403 * 19 18 17 21 21 O 1.42894 * 109.47213 * 64.99889 * 19 18 17 22 22 C 1.53005 * 109.47265 * 185.00182 * 19 18 17 23 23 C 1.53175 * 109.54326 * 299.55780 * 22 19 18 24 24 C 1.53087 * 109.16304 * 183.15237 * 23 22 19 25 25 O 1.42905 * 109.41388 * 57.60529 * 24 23 22 26 26 C 1.42900 * 114.10130 * 298.84018 * 25 24 23 27 27 C 1.53094 * 109.41291 * 61.16150 * 26 25 24 28 28 N 1.31932 * 120.84721 * 359.43329 * 13 12 11 29 29 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43671 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66271 * 180.02562 * 11 10 9 32 32 H 1.08004 * 120.25862 * 180.27911 * 12 11 10 33 33 H 0.96996 * 119.99895 * 5.40395 * 14 13 12 34 34 H 0.97003 * 120.00332 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.46828 * 60.00626 * 18 17 15 36 36 H 1.09000 * 109.47165 * 300.00600 * 18 17 15 37 37 H 0.96703 * 114.00035 * 60.00612 * 21 19 18 38 38 H 1.09004 * 109.54007 * 59.82109 * 22 19 18 39 39 H 1.08999 * 109.51682 * 303.05609 * 23 22 19 40 40 H 1.08999 * 109.52113 * 63.24333 * 23 22 19 41 41 H 1.09002 * 109.47794 * 297.62639 * 24 23 22 42 42 H 1.08994 * 109.48204 * 177.58753 * 24 23 22 43 43 H 1.09000 * 109.47967 * 301.18059 * 26 25 24 44 44 H 1.08996 * 109.48620 * 181.14050 * 26 25 24 45 45 H 1.09004 * 109.52227 * 182.49096 * 27 26 25 46 46 H 1.08991 * 109.52384 * 62.29298 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6517 -0.0016 11 6 1.3032 -4.8415 -0.0022 12 6 -0.0828 -4.7934 0.0042 13 6 -0.7279 -3.5549 -0.0009 14 7 -2.1195 -3.5047 -0.0008 15 6 -2.7511 -2.3196 -0.1156 16 8 -2.1092 -1.2871 -0.1253 17 7 -4.0941 -2.2792 -0.2199 18 6 -4.7808 -0.9910 -0.3441 19 6 -6.2894 -1.2248 -0.4450 20 1 -6.4968 -1.9091 -1.2677 21 8 -6.7664 -1.7910 0.7772 22 6 -6.9962 0.1081 -0.6996 23 6 -6.7148 1.0673 0.4611 24 6 -7.4889 2.3688 0.2364 25 8 -8.8832 2.0781 0.1203 26 6 -9.2117 1.2235 -0.9768 27 6 -8.5069 -0.1241 -0.8009 28 7 -0.0357 -2.4317 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 3.0884 -3.6559 -0.0029 31 1 1.8214 -5.7890 -0.0026 32 1 -0.6590 -5.7069 0.0085 33 1 -2.6342 -4.3227 0.0819 34 1 -4.6063 -3.1029 -0.2119 35 1 -4.4315 -0.4781 -1.2404 36 1 -4.5660 -0.3788 0.5318 37 1 -6.6152 -1.2349 1.5537 38 1 -6.6308 0.5426 -1.6302 39 1 -7.0350 0.6099 1.3972 40 1 -5.6470 1.2816 0.5058 41 1 -7.1396 2.8460 -0.6792 42 1 -7.3263 3.0387 1.0806 43 1 -8.8849 1.6858 -1.9083 44 1 -10.2902 1.0683 -1.0066 45 1 -8.7207 -0.7618 -1.6588 46 1 -8.8632 -0.6054 0.1097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366532861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:38 Heat of formation + Delta-G solvation = -97.955632 kcal Electronic energy + Delta-G solvation = -29163.454236 eV Core-core repulsion = 25052.752827 eV Total energy + Delta-G solvation = -4110.701409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24615 -40.69949 -39.51039 -38.37154 -35.95058 -35.01111 -34.81285 -34.35103 -32.19615 -32.06472 -31.08088 -29.56553 -27.45107 -26.04355 -24.61074 -23.82387 -23.11543 -22.65875 -21.44472 -20.82439 -19.76783 -18.86098 -18.20191 -17.73736 -17.15364 -16.75991 -16.63622 -16.51919 -16.25320 -16.03776 -15.87734 -15.63382 -15.57150 -15.25369 -14.71871 -14.64569 -14.38246 -14.15216 -13.84449 -13.64454 -13.32558 -13.19033 -12.88409 -12.71212 -12.58385 -12.52645 -12.30349 -12.25604 -12.06155 -11.73276 -11.60709 -11.49601 -11.29207 -10.98750 -10.86117 -10.84554 -10.39075 -9.90923 -9.80820 -9.09846 -8.76673 -8.01007 -6.39613 0.97433 1.29402 1.40080 1.52458 1.54593 1.81354 2.27642 2.57797 2.97005 3.05138 3.25805 3.51358 3.56315 3.74578 3.79694 4.02753 4.08729 4.13775 4.22099 4.32597 4.36986 4.43875 4.57223 4.65606 4.72632 4.77675 4.79801 4.81939 4.87707 4.90067 4.97950 5.01162 5.07818 5.12646 5.19107 5.29348 5.40407 5.66904 5.70977 5.87180 5.93919 6.05320 6.27160 6.32852 6.44000 6.68496 6.83551 7.09076 7.27341 8.02916 8.39599 8.59946 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.002966 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.440289 B = 9437.137345 C =11337.652816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.010 3.990 3 Si 0.973 3.027 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.364 3.636 14 N -0.662 5.662 15 C 0.655 3.345 16 O -0.516 6.516 17 N -0.733 5.733 18 C 0.116 3.884 19 C 0.121 3.879 20 H 0.115 0.885 21 O -0.561 6.561 22 C -0.114 4.114 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.404 6.404 26 C 0.055 3.945 27 C -0.139 4.139 28 N -0.506 5.506 29 H 0.268 0.732 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.416 0.584 34 H 0.404 0.596 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.382 0.618 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.176 0.507 -1.662 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.216 4.216 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.124 3.876 14 N -0.313 5.313 15 C 0.354 3.646 16 O -0.384 6.384 17 N -0.393 5.393 18 C -0.009 4.009 19 C 0.061 3.939 20 H 0.133 0.867 21 O -0.369 6.369 22 C -0.133 4.133 23 C -0.196 4.196 24 C -0.017 4.017 25 O -0.323 6.323 26 C -0.021 4.021 27 C -0.176 4.176 28 N -0.226 5.226 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.253 0.747 34 H 0.240 0.760 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.566 2.066 -1.957 19.772 hybrid contribution 1.001 -0.532 0.218 1.155 sum -18.565 1.533 -1.739 18.709 Atomic orbital electron populations 1.70578 1.07109 1.27695 1.24920 1.27041 0.96042 1.03927 0.94577 0.85296 0.79611 0.77275 0.78357 1.17826 1.19606 1.19553 1.19911 0.94383 0.90471 1.44898 0.89715 1.18910 0.87976 0.93439 0.88678 1.21806 0.99192 0.93851 1.20521 1.21021 0.93484 0.97342 0.93954 1.20918 0.95166 0.95569 1.25575 1.18853 0.84212 0.91090 0.93400 1.42405 1.03890 1.09079 1.75888 1.16753 0.82805 0.84884 0.80191 1.91375 1.64025 1.31566 1.51463 1.44905 1.03740 1.10075 1.80596 1.21869 0.92777 0.84801 1.01480 1.22023 0.88440 0.95250 0.88199 0.86712 1.86542 1.83198 1.49761 1.17385 1.21784 0.96580 0.95190 0.99772 1.22302 1.01147 0.96890 0.99216 1.22617 0.80733 0.96056 1.02248 1.87908 1.24809 1.68416 1.51210 1.22747 1.00905 0.89486 0.89002 1.22099 0.93649 0.98096 1.03784 1.68657 1.07187 1.25301 1.21407 0.92085 0.87785 0.84485 0.85100 0.74654 0.76004 0.92628 0.92698 0.76826 0.89595 0.90536 0.90752 0.92706 0.88251 0.92602 0.87758 0.89558 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.87 8.99 21.84 0.20 -39.68 16 2 C 0.01 0.54 5.50 85.29 0.47 1.01 16 3 Si 0.97 41.07 29.56 68.60 2.03 43.10 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.47 -26.94 9.14 23.46 0.21 -26.72 16 8 H 0.08 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.24 13.86 6.55 40.20 0.26 14.13 16 10 C -0.33 -16.98 9.83 22.87 0.22 -16.76 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.27 16 12 C -0.35 -15.03 9.95 22.72 0.23 -14.81 16 13 C 0.36 18.01 7.43 133.24 0.99 19.00 16 14 N -0.66 -26.19 5.39 -322.13 -1.74 -27.92 16 15 C 0.66 27.13 8.52 179.05 1.53 28.65 16 16 O -0.52 -27.24 12.11 -3.97 -0.05 -27.29 16 17 N -0.73 -20.94 5.51 -478.54 -2.64 -23.57 16 18 C 0.12 2.87 4.82 86.38 0.42 3.29 16 19 C 0.12 2.01 2.81 30.59 0.09 2.10 16 20 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 21 O -0.56 -9.77 12.52 -148.98 -1.87 -11.63 16 22 C -0.11 -1.67 2.16 -10.67 -0.02 -1.69 16 23 C -0.16 -2.48 4.74 30.68 0.15 -2.33 16 24 C 0.06 0.96 6.84 72.01 0.49 1.45 16 25 O -0.40 -7.51 10.77 -148.98 -1.60 -9.11 16 26 C 0.05 0.75 6.84 72.01 0.49 1.24 16 27 C -0.14 -1.81 5.32 30.69 0.16 -1.65 16 28 N -0.51 -29.65 5.74 -186.37 -1.07 -30.72 16 29 H 0.27 14.68 8.29 -92.71 -0.77 13.91 16 30 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 31 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.42 12.16 8.71 -92.71 -0.81 11.35 16 34 H 0.40 8.95 8.49 -92.71 -0.79 8.16 16 35 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.52 6.80 -2.39 -0.02 1.50 16 37 H 0.38 5.58 7.26 -74.06 -0.54 5.04 16 38 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.08 1.15 6.63 -2.39 -0.02 1.13 16 40 H 0.07 1.32 6.75 -2.39 -0.02 1.30 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.09 7.60 -2.39 -0.02 1.07 16 Total: -1.00 -77.81 370.20 -1.92 -79.73 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -1.10 Total: 41.47 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.91 Total: 5.64 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.24 Total: -121.89 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -3.52 Total: -48.04 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -77.81 -1.92 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366532861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.227 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds