Wall clock time and date at job start Tue Mar 31 2020 18:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47310 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47085 * 120.00032 * 3 2 1 6 6 H 1.48496 * 109.47208 * 239.99842 * 3 2 1 7 7 C 1.40023 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00083 * 1.94065 * 7 2 1 9 9 C 1.41337 * 119.99954 * 181.94977 * 7 2 1 10 10 C 1.40606 * 119.78789 * 186.97732 * 9 7 2 11 11 C 1.38312 * 119.13109 * 179.72529 * 10 9 7 12 12 C 1.38693 * 118.66800 * 0.53080 * 11 10 9 13 13 C 1.39642 * 119.49415 * 359.73337 * 12 11 10 14 14 N 1.39252 * 119.57234 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99932 * 18.81476 * 14 13 12 16 16 O 1.21573 * 120.00446 * 5.80746 * 15 14 13 17 17 N 1.34776 * 119.99823 * 185.80280 * 15 14 13 18 18 C 1.46497 * 120.00359 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47499 * 179.97438 * 18 17 15 20 20 H 1.09001 * 109.46928 * 60.00826 * 19 18 17 21 21 O 1.42894 * 109.47197 * 300.00057 * 19 18 17 22 22 C 1.53005 * 109.46882 * 180.02562 * 19 18 17 23 23 C 1.53180 * 109.54380 * 299.82069 * 22 19 18 24 24 C 1.53098 * 109.15896 * 183.24226 * 23 22 19 25 25 O 1.42911 * 109.48727 * 57.47792 * 24 23 22 26 26 C 1.42910 * 114.09367 * 298.89202 * 25 24 23 27 27 C 1.53084 * 109.41474 * 61.15535 * 26 25 24 28 28 N 1.31932 * 120.85262 * 359.97438 * 13 12 11 29 29 H 0.97000 * 119.99532 * 174.83213 * 1 2 3 30 30 H 1.08010 * 120.43348 * 359.97438 * 10 9 7 31 31 H 1.07999 * 120.66786 * 180.25843 * 11 10 9 32 32 H 1.08001 * 120.24836 * 179.74531 * 12 11 10 33 33 H 0.96999 * 120.00070 * 198.81994 * 14 13 12 34 34 H 0.96998 * 120.00065 * 0.02562 * 17 15 14 35 35 H 1.09004 * 109.47488 * 300.00729 * 18 17 15 36 36 H 1.09009 * 109.46692 * 59.99824 * 18 17 15 37 37 H 0.96690 * 114.00556 * 300.00063 * 21 19 18 38 38 H 1.08994 * 109.54377 * 60.00225 * 22 19 18 39 39 H 1.08997 * 109.52307 * 303.06330 * 23 22 19 40 40 H 1.09004 * 109.52001 * 63.25082 * 23 22 19 41 41 H 1.09001 * 109.41014 * 297.50164 * 24 23 22 42 42 H 1.08991 * 109.48711 * 177.50525 * 24 23 22 43 43 H 1.08997 * 109.47837 * 301.16790 * 26 25 24 44 44 H 1.09001 * 109.47647 * 181.13938 * 26 25 24 45 45 H 1.09007 * 109.52240 * 182.48219 * 27 26 25 46 46 H 1.09000 * 109.58011 * 62.33073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0951 1.6965 -1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 1.4681 -2.1477 -0.0326 9 6 3.4203 -1.2130 0.0411 10 6 4.1233 -2.4216 -0.1076 11 6 5.5058 -2.4054 -0.0704 12 6 6.1520 -1.1938 0.1243 13 6 5.3975 -0.0280 0.2712 14 7 6.0446 1.1893 0.4672 15 6 7.3466 1.3200 0.1444 16 8 7.9286 0.4108 -0.4147 17 7 8.0035 2.4588 0.4412 18 6 9.4188 2.6008 0.0909 19 6 9.9185 3.9771 0.5344 20 1 9.7997 4.0764 1.6134 21 8 9.1606 4.9940 -0.1239 22 6 11.3966 4.1255 0.1679 23 6 12.2117 3.0389 0.8759 24 6 13.6973 3.2445 0.5681 25 8 14.0929 4.5542 0.9809 26 6 13.3971 5.6106 0.3159 27 6 11.8999 5.5013 0.6153 28 7 4.0795 -0.0650 0.2266 29 1 -0.4849 -0.8367 -0.0757 30 1 3.5907 -3.3499 -0.2531 31 1 6.0707 -3.3186 -0.1861 32 1 7.2306 -1.1523 0.1617 33 1 5.5584 1.9432 0.8362 34 1 7.5393 3.1842 0.8876 35 1 9.9970 1.8248 0.5926 36 1 9.5376 2.5019 -0.9882 37 1 9.2198 4.9663 -1.0886 38 1 11.5164 4.0266 -0.9109 39 1 12.0512 3.1061 1.9518 40 1 11.8970 2.0577 0.5203 41 1 13.8636 3.1355 -0.5036 42 1 14.2861 2.5008 1.1049 43 1 13.5596 5.5325 -0.7591 44 1 13.7698 6.5713 0.6711 45 1 11.3623 6.2797 0.0736 46 1 11.7318 5.6203 1.6857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366532867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:42 Heat of formation + Delta-G solvation = -106.309432 kcal Electronic energy + Delta-G solvation = -28598.235464 eV Core-core repulsion = 24487.171807 eV Total energy + Delta-G solvation = -4111.063657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54539 -40.00364 -38.47991 -37.75625 -34.70828 -34.34735 -34.08826 -33.43657 -31.58096 -31.10111 -29.85685 -28.61687 -25.59691 -25.19104 -23.93839 -22.62623 -21.97222 -21.70830 -20.79913 -20.23434 -18.69599 -17.88815 -17.58892 -16.83710 -16.61374 -16.35322 -15.96056 -15.51041 -15.16088 -15.02195 -14.96286 -14.80073 -14.35546 -14.05649 -13.91068 -13.63037 -13.54863 -13.11472 -12.86377 -12.74976 -12.40784 -12.21084 -12.19401 -11.84488 -11.79537 -11.46133 -11.21965 -11.05224 -10.85862 -10.80545 -10.51689 -10.36498 -10.01309 -9.87359 -9.67337 -9.44295 -9.16084 -9.09474 -8.54058 -7.79564 -7.35355 -7.23730 -4.76769 2.38540 2.64240 2.66293 3.40171 3.45482 3.54221 3.66389 3.82334 3.96675 4.02071 4.18442 4.34120 4.38333 4.39949 4.51595 4.63168 4.66259 4.76050 4.80157 4.92099 5.03374 5.17974 5.24101 5.26575 5.36645 5.43039 5.53721 5.54271 5.61692 5.67438 5.83099 5.85999 6.09325 6.28304 6.41732 6.54157 6.66295 6.76112 6.89304 7.16717 7.17680 7.32941 7.45549 7.62015 7.75869 7.91532 8.19723 8.33171 8.63861 8.73544 9.41774 10.00934 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002340 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.226349 B =11962.951863 C =13049.803866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.042 3.958 3 Si 1.159 2.841 4 H -0.333 1.333 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.279 4.279 11 C -0.034 4.034 12 C -0.311 4.311 13 C 0.405 3.595 14 N -0.667 5.667 15 C 0.709 3.291 16 O -0.566 6.566 17 N -0.741 5.741 18 C 0.107 3.893 19 C 0.102 3.898 20 H 0.107 0.893 21 O -0.555 6.555 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.061 3.939 25 O -0.385 6.385 26 C 0.059 3.941 27 C -0.145 4.145 28 N -0.601 5.601 29 H 0.283 0.717 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.378 0.622 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.531 11.557 0.982 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.178 4.178 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.151 3.849 10 C -0.302 4.302 11 C -0.058 4.058 12 C -0.336 4.336 13 C 0.173 3.827 14 N -0.314 5.314 15 C 0.409 3.591 16 O -0.442 6.442 17 N -0.398 5.398 18 C -0.018 4.018 19 C 0.042 3.958 20 H 0.125 0.875 21 O -0.360 6.360 22 C -0.136 4.136 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.303 6.303 26 C -0.017 4.017 27 C -0.182 4.182 28 N -0.327 5.327 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.239 0.761 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.225 0.775 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.319 13.181 1.388 26.822 hybrid contribution -0.104 -2.259 -0.598 2.339 sum 23.215 10.922 0.789 25.668 Atomic orbital electron populations 1.70646 1.08146 1.32768 1.31362 1.27775 0.95350 1.06185 0.88539 0.81753 0.70482 0.69555 0.78676 1.26716 1.21373 1.22266 1.20711 0.90077 0.96273 1.43817 0.89860 1.18263 0.93440 0.85881 0.87345 1.21590 0.93886 0.98459 1.16239 1.20928 0.94066 0.96390 0.94465 1.21531 1.01087 0.91090 1.19864 1.17789 0.88475 0.83281 0.93125 1.42336 1.09440 1.13944 1.65681 1.15707 0.81096 0.82894 0.79409 1.90848 1.67471 1.39328 1.46591 1.44953 1.11566 1.17498 1.65827 1.21951 0.81050 0.97621 1.01188 1.22216 0.89231 0.85963 0.98349 0.87515 1.86599 1.71673 1.53602 1.24130 1.21842 0.94716 0.96045 1.01017 1.22314 0.95882 0.99247 1.01964 1.22576 0.94563 0.84843 0.99589 1.87951 1.62674 1.14381 1.65320 1.22602 0.91485 0.91027 0.96622 1.22147 0.96309 0.96927 1.02861 1.65874 1.06670 1.29652 1.30466 0.90605 0.87690 0.87635 0.84171 0.76073 0.76450 0.90355 0.91282 0.77468 0.90336 0.90513 0.89930 0.93110 0.88646 0.93239 0.88819 0.90072 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.11 13.65 55.55 0.76 -21.36 16 2 C 0.04 1.16 5.52 -17.35 -0.10 1.07 16 3 Si 1.16 28.32 25.53 -169.99 -4.34 23.98 16 4 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 5 H -0.29 -6.69 6.70 56.52 0.38 -6.31 16 6 H -0.29 -7.33 7.10 56.52 0.40 -6.93 16 7 C -0.48 -13.11 9.58 -37.74 -0.36 -13.47 16 8 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 9 C 0.27 7.31 6.39 -85.00 -0.54 6.76 16 10 C -0.28 -6.74 9.83 -38.66 -0.38 -7.12 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.31 -7.10 8.83 -38.89 -0.34 -7.45 16 13 C 0.40 9.42 7.51 -154.98 -1.16 8.26 16 14 N -0.67 -12.57 5.42 -15.79 -0.09 -12.65 16 15 C 0.71 12.00 8.40 -86.92 -0.73 11.27 16 16 O -0.57 -11.32 13.14 5.30 0.07 -11.25 16 17 N -0.74 -8.65 5.45 -65.23 -0.36 -9.01 16 18 C 0.11 0.97 4.99 -4.04 -0.02 0.95 16 19 C 0.10 0.67 2.64 -26.73 -0.07 0.60 16 20 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 21 O -0.55 -3.96 12.49 -35.23 -0.44 -4.40 16 22 C -0.12 -0.65 2.04 -90.43 -0.18 -0.84 16 23 C -0.16 -0.93 4.98 -26.59 -0.13 -1.06 16 24 C 0.06 0.38 6.84 37.21 0.25 0.64 16 25 O -0.38 -3.16 10.77 -35.23 -0.38 -3.53 16 26 C 0.06 0.36 6.84 37.20 0.25 0.61 16 27 C -0.14 -0.83 5.23 -26.60 -0.14 -0.97 16 28 N -0.60 -15.39 4.58 -10.26 -0.05 -15.44 16 29 H 0.28 7.41 8.72 -40.82 -0.36 7.05 16 30 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 31 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.14 3.15 5.33 -52.50 -0.28 2.87 16 33 H 0.40 6.71 8.84 -40.82 -0.36 6.35 16 34 H 0.40 3.94 8.37 -40.82 -0.34 3.59 16 35 H 0.08 0.74 6.52 -51.93 -0.34 0.40 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.38 1.77 9.04 45.56 0.41 2.18 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.48 6.63 -51.93 -0.34 0.14 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.44 7.80 -51.92 -0.40 0.03 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -33.21 370.41 -9.20 -42.41 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.91 Total: 7.58 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -4.06 Total: -1.91 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.27 Total: -58.45 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.75 Total: -19.19 kcal Atomic # 14 Polarization: 28.32 SS G_CDS: -4.34 Total: 23.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.21 -9.20 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366532867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.900 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds