Wall clock time and date at job start Tue Mar 31 2020 18:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47310 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47085 * 120.00032 * 3 2 1 6 6 H 1.48496 * 109.47208 * 239.99842 * 3 2 1 7 7 C 1.40023 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00083 * 1.94065 * 7 2 1 9 9 C 1.41337 * 119.99954 * 181.94977 * 7 2 1 10 10 C 1.40606 * 119.78789 * 186.97732 * 9 7 2 11 11 C 1.38312 * 119.13109 * 179.72529 * 10 9 7 12 12 C 1.38693 * 118.66800 * 0.53080 * 11 10 9 13 13 C 1.39642 * 119.49415 * 359.73337 * 12 11 10 14 14 N 1.39252 * 119.57234 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99932 * 18.81476 * 14 13 12 16 16 O 1.21573 * 120.00446 * 5.80746 * 15 14 13 17 17 N 1.34776 * 119.99823 * 185.80280 * 15 14 13 18 18 C 1.46497 * 120.00359 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47499 * 179.97438 * 18 17 15 20 20 H 1.09001 * 109.46928 * 60.00826 * 19 18 17 21 21 O 1.42894 * 109.47197 * 300.00057 * 19 18 17 22 22 C 1.53005 * 109.46882 * 180.02562 * 19 18 17 23 23 C 1.53180 * 109.54380 * 299.82069 * 22 19 18 24 24 C 1.53098 * 109.15896 * 183.24226 * 23 22 19 25 25 O 1.42911 * 109.48727 * 57.47792 * 24 23 22 26 26 C 1.42910 * 114.09367 * 298.89202 * 25 24 23 27 27 C 1.53084 * 109.41474 * 61.15535 * 26 25 24 28 28 N 1.31932 * 120.85262 * 359.97438 * 13 12 11 29 29 H 0.97000 * 119.99532 * 174.83213 * 1 2 3 30 30 H 1.08010 * 120.43348 * 359.97438 * 10 9 7 31 31 H 1.07999 * 120.66786 * 180.25843 * 11 10 9 32 32 H 1.08001 * 120.24836 * 179.74531 * 12 11 10 33 33 H 0.96999 * 120.00070 * 198.81994 * 14 13 12 34 34 H 0.96998 * 120.00065 * 0.02562 * 17 15 14 35 35 H 1.09004 * 109.47488 * 300.00729 * 18 17 15 36 36 H 1.09009 * 109.46692 * 59.99824 * 18 17 15 37 37 H 0.96690 * 114.00556 * 300.00063 * 21 19 18 38 38 H 1.08994 * 109.54377 * 60.00225 * 22 19 18 39 39 H 1.08997 * 109.52307 * 303.06330 * 23 22 19 40 40 H 1.09004 * 109.52001 * 63.25082 * 23 22 19 41 41 H 1.09001 * 109.41014 * 297.50164 * 24 23 22 42 42 H 1.08991 * 109.48711 * 177.50525 * 24 23 22 43 43 H 1.08997 * 109.47837 * 301.16790 * 26 25 24 44 44 H 1.09001 * 109.47647 * 181.13938 * 26 25 24 45 45 H 1.09007 * 109.52240 * 182.48219 * 27 26 25 46 46 H 1.09000 * 109.58011 * 62.33073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0951 1.6965 -1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 1.4681 -2.1477 -0.0326 9 6 3.4203 -1.2130 0.0411 10 6 4.1233 -2.4216 -0.1076 11 6 5.5058 -2.4054 -0.0704 12 6 6.1520 -1.1938 0.1243 13 6 5.3975 -0.0280 0.2712 14 7 6.0446 1.1893 0.4672 15 6 7.3466 1.3200 0.1444 16 8 7.9286 0.4108 -0.4147 17 7 8.0035 2.4588 0.4412 18 6 9.4188 2.6008 0.0909 19 6 9.9185 3.9771 0.5344 20 1 9.7997 4.0764 1.6134 21 8 9.1606 4.9940 -0.1239 22 6 11.3966 4.1255 0.1679 23 6 12.2117 3.0389 0.8759 24 6 13.6973 3.2445 0.5681 25 8 14.0929 4.5542 0.9809 26 6 13.3971 5.6106 0.3159 27 6 11.8999 5.5013 0.6153 28 7 4.0795 -0.0650 0.2266 29 1 -0.4849 -0.8367 -0.0757 30 1 3.5907 -3.3499 -0.2531 31 1 6.0707 -3.3186 -0.1861 32 1 7.2306 -1.1523 0.1617 33 1 5.5584 1.9432 0.8362 34 1 7.5393 3.1842 0.8876 35 1 9.9970 1.8248 0.5926 36 1 9.5376 2.5019 -0.9882 37 1 9.2198 4.9663 -1.0886 38 1 11.5164 4.0266 -0.9109 39 1 12.0512 3.1061 1.9518 40 1 11.8970 2.0577 0.5203 41 1 13.8636 3.1355 -0.5036 42 1 14.2861 2.5008 1.1049 43 1 13.5596 5.5325 -0.7591 44 1 13.7698 6.5713 0.6711 45 1 11.3623 6.2797 0.0736 46 1 11.7318 5.6203 1.6857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366532867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:41 Heat of formation + Delta-G solvation = -131.228651 kcal Electronic energy + Delta-G solvation = -28599.316043 eV Core-core repulsion = 24487.171807 eV Total energy + Delta-G solvation = -4112.144235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85389 -40.73148 -40.02928 -38.51090 -36.30442 -35.54068 -35.24100 -34.62009 -32.98278 -32.06524 -31.41401 -29.59191 -27.27676 -26.14460 -24.47457 -23.92057 -23.54737 -22.73935 -21.85977 -21.17904 -20.48706 -19.44220 -18.76004 -17.78558 -17.24732 -17.04678 -16.89920 -16.81676 -16.53480 -16.26614 -16.04903 -15.80390 -15.49982 -15.26560 -14.99617 -14.80221 -14.63140 -14.44877 -14.25634 -14.11261 -13.72385 -13.44392 -13.12850 -12.97460 -12.71083 -12.67762 -12.25034 -12.24390 -11.95404 -11.77303 -11.62476 -11.53067 -11.34454 -11.17975 -11.06484 -10.94902 -10.41907 -10.36233 -10.18974 -9.74340 -9.26527 -9.15338 -6.81324 0.59395 0.75222 1.36453 1.57150 1.69555 1.99795 2.05443 2.44398 2.69376 2.95796 3.01347 3.39133 3.50516 3.57143 3.74843 3.86491 4.03413 4.07295 4.14347 4.17330 4.34906 4.40139 4.44123 4.55883 4.60030 4.68166 4.70623 4.73781 4.80527 4.81901 4.83875 4.92765 4.98784 5.14941 5.21607 5.33723 5.36724 5.37620 5.39719 5.44918 5.66879 5.77823 5.91467 6.04525 6.29906 6.41468 6.61348 6.75382 6.84085 7.36726 7.51922 7.95584 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002340 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.226349 B =11962.951863 C =13049.803866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.013 3.987 3 Si 1.191 2.809 4 H -0.330 1.330 5 H -0.272 1.272 6 H -0.302 1.302 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.259 3.741 10 C -0.294 4.294 11 C -0.026 4.026 12 C -0.306 4.306 13 C 0.395 3.605 14 N -0.666 5.666 15 C 0.708 3.292 16 O -0.597 6.597 17 N -0.719 5.719 18 C 0.104 3.896 19 C 0.117 3.883 20 H 0.107 0.893 21 O -0.564 6.564 22 C -0.111 4.111 23 C -0.154 4.154 24 C 0.057 3.943 25 O -0.408 6.408 26 C 0.055 3.945 27 C -0.139 4.139 28 N -0.614 5.614 29 H 0.281 0.719 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.415 0.585 34 H 0.413 0.587 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.389 0.611 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.063 12.628 0.969 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.203 4.203 3 Si 1.025 2.975 4 H -0.264 1.264 5 H -0.200 1.200 6 H -0.231 1.231 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.051 4.051 12 C -0.330 4.330 13 C 0.163 3.837 14 N -0.314 5.314 15 C 0.408 3.592 16 O -0.475 6.475 17 N -0.375 5.375 18 C -0.020 4.020 19 C 0.057 3.943 20 H 0.125 0.875 21 O -0.372 6.372 22 C -0.130 4.130 23 C -0.192 4.192 24 C -0.020 4.020 25 O -0.327 6.327 26 C -0.021 4.021 27 C -0.177 4.177 28 N -0.340 5.340 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.251 0.749 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.885 14.307 1.393 29.608 hybrid contribution -0.630 -2.611 -0.612 2.755 sum 25.255 11.695 0.781 27.843 Atomic orbital electron populations 1.70667 1.08416 1.32669 1.33576 1.28557 0.95643 1.07992 0.88145 0.81341 0.69804 0.67713 0.78668 1.26389 1.19987 1.23127 1.20701 0.90966 0.95917 1.46452 0.91312 1.18448 0.93417 0.87275 0.87513 1.21758 0.94946 0.98141 1.16816 1.21341 0.93439 0.97813 0.92466 1.21874 1.01664 0.91265 1.18236 1.18111 0.87983 0.85199 0.92441 1.42305 1.10220 1.12992 1.65849 1.15845 0.80376 0.83833 0.79137 1.90810 1.67816 1.40856 1.48064 1.44876 1.12352 1.15996 1.64294 1.22188 0.79213 0.99227 1.01327 1.22065 0.89607 0.84363 0.98263 0.87499 1.86585 1.71770 1.53480 1.25317 1.21788 0.93733 0.95908 1.01553 1.22288 0.95785 0.99450 1.01679 1.22678 0.94802 0.84353 1.00119 1.87921 1.63403 1.15336 1.66038 1.22727 0.91469 0.90861 0.97061 1.22089 0.96220 0.97058 1.02343 1.65857 1.07868 1.29510 1.30773 0.90865 0.86699 0.83800 0.83202 0.74867 0.75022 0.90324 0.91231 0.76124 0.89360 0.91056 0.89696 0.92377 0.88238 0.92365 0.88177 0.89474 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.50 13.65 21.84 0.30 -46.20 16 2 C 0.01 0.72 5.52 85.29 0.47 1.19 16 3 Si 1.19 57.34 25.53 68.60 1.75 59.09 16 4 H -0.33 -15.52 7.11 99.48 0.71 -14.81 16 5 H -0.27 -12.33 6.70 99.48 0.67 -11.67 16 6 H -0.30 -14.81 7.10 99.48 0.71 -14.10 16 7 C -0.51 -28.57 9.58 23.47 0.22 -28.34 16 8 H 0.07 3.92 8.05 -2.91 -0.02 3.90 16 9 C 0.26 13.74 6.39 40.20 0.26 14.00 16 10 C -0.29 -13.92 9.83 22.87 0.22 -13.70 16 11 C -0.03 -1.10 10.15 22.40 0.23 -0.88 16 12 C -0.31 -13.26 8.83 22.72 0.20 -13.06 16 13 C 0.39 17.69 7.51 133.24 1.00 18.69 16 14 N -0.67 -23.64 5.42 -322.14 -1.75 -25.39 16 15 C 0.71 22.24 8.40 179.06 1.50 23.74 16 16 O -0.60 -22.47 13.14 -3.95 -0.05 -22.52 16 17 N -0.72 -14.79 5.45 -478.55 -2.61 -17.40 16 18 C 0.10 1.60 4.99 86.38 0.43 2.03 16 19 C 0.12 1.22 2.64 30.59 0.08 1.30 16 20 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 21 O -0.56 -6.39 12.49 -148.98 -1.86 -8.25 16 22 C -0.11 -0.96 2.04 -10.67 -0.02 -0.99 16 23 C -0.15 -1.53 4.98 30.69 0.15 -1.37 16 24 C 0.06 0.62 6.84 72.01 0.49 1.12 16 25 O -0.41 -6.11 10.77 -148.98 -1.60 -7.71 16 26 C 0.06 0.56 6.84 72.01 0.49 1.06 16 27 C -0.14 -1.30 5.23 30.68 0.16 -1.14 16 28 N -0.61 -30.88 4.58 -186.37 -0.85 -31.74 16 29 H 0.28 15.23 8.72 -92.71 -0.81 14.42 16 30 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.15 6.31 5.33 -3.16 -0.02 6.29 16 33 H 0.41 12.80 8.84 -92.71 -0.82 11.98 16 34 H 0.41 6.84 8.37 -92.71 -0.78 6.06 16 35 H 0.08 1.27 6.52 -2.38 -0.02 1.26 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.39 2.44 9.04 -74.06 -0.67 1.77 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.80 6.63 -2.38 -0.02 0.79 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.72 7.80 -2.38 -0.02 0.70 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -70.75 370.41 -2.08 -72.83 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -1.31 Total: 23.62 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.90 Total: 3.66 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -4.91 Total: -120.72 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -3.52 Total: -38.48 kcal Atomic # 14 Polarization: 57.34 SS G_CDS: 1.75 Total: 59.09 kcal Total: -70.75 -2.08 -72.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366532867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.397 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds