Wall clock time and date at job start Tue Mar 31 2020 18:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47349 * 274.99333 * 3 2 1 5 5 H 1.48499 * 109.46930 * 34.99043 * 3 2 1 6 6 H 1.48494 * 109.46956 * 154.98973 * 3 2 1 7 7 C 1.40025 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99835 * 187.06732 * 7 2 1 9 9 C 1.41328 * 120.00316 * 7.06351 * 7 2 1 10 10 C 1.40608 * 119.79263 * 187.12481 * 9 7 2 11 11 C 1.38307 * 119.13586 * 180.02562 * 10 9 7 12 12 C 1.38695 * 118.66866 * 359.97438 * 11 10 9 13 13 C 1.39644 * 119.49388 * 359.97438 * 12 11 10 14 14 N 1.39244 * 119.57326 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00106 * 341.78402 * 14 13 12 16 16 O 1.21578 * 119.99799 * 353.90131 * 15 14 13 17 17 N 1.34769 * 120.00037 * 173.90191 * 15 14 13 18 18 C 1.46508 * 119.99960 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.47172 * 325.00558 * 18 17 15 20 20 C 1.52996 * 109.46566 * 84.99930 * 18 17 15 21 21 O 1.42909 * 109.47212 * 64.06053 * 20 18 17 22 22 C 1.52997 * 109.47357 * 204.99853 * 18 17 15 23 23 H 1.08995 * 109.52545 * 296.86814 * 22 18 17 24 24 C 1.53176 * 109.52164 * 176.73605 * 22 18 17 25 25 C 1.53177 * 109.03396 * 183.11512 * 24 22 18 26 26 C 1.53091 * 109.16213 * 56.98427 * 25 24 22 27 27 O 1.42898 * 109.41509 * 302.38753 * 26 25 24 28 28 C 1.42902 * 114.09672 * 61.16143 * 27 26 25 29 29 N 1.31926 * 120.85201 * 0.25645 * 13 12 11 30 30 H 0.97001 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.42936 * 359.97438 * 10 9 7 32 32 H 1.07992 * 120.66901 * 180.02562 * 11 10 9 33 33 H 1.07997 * 120.24924 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00361 * 161.50882 * 14 13 12 35 35 H 0.97000 * 120.00728 * 0.02562 * 17 15 14 36 36 H 1.09000 * 109.46928 * 184.05131 * 20 18 17 37 37 H 1.08992 * 109.47951 * 304.05833 * 20 18 17 38 38 H 0.96696 * 113.99775 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.54690 * 302.98194 * 24 22 18 40 40 H 1.08997 * 109.53962 * 63.25435 * 24 22 18 41 41 H 1.09006 * 109.52182 * 176.88724 * 25 24 22 42 42 H 1.08995 * 109.52546 * 297.01218 * 25 24 22 43 43 H 1.09000 * 109.48596 * 62.37555 * 26 25 24 44 44 H 1.09007 * 109.48095 * 182.39418 * 26 25 24 45 45 H 1.09008 * 109.48022 * 178.85900 * 28 27 26 46 46 H 1.09000 * 109.47963 * 58.82479 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4956 2.6199 0.8029 6 1 3.5877 1.4120 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0813 -1.2163 0.1145 9 6 1.3089 -2.4319 -0.1516 10 6 1.9921 -3.6517 -0.0019 11 6 1.2953 -4.8368 -0.1531 12 6 -0.0588 -4.7795 -0.4479 13 6 -0.6810 -3.5367 -0.5832 14 7 -2.0402 -3.4772 -0.8796 15 6 -2.6665 -4.5561 -1.3900 16 8 -2.0256 -5.5432 -1.6952 17 7 -4.0030 -4.5407 -1.5620 18 6 -4.6837 -5.7132 -2.1173 19 1 -4.0418 -6.1886 -2.8589 20 6 -4.9870 -6.7064 -0.9937 21 8 -5.9038 -6.1155 -0.0703 22 6 -5.9922 -5.2773 -2.7797 23 1 -6.6570 -4.8522 -2.0279 24 6 -6.6647 -6.4895 -3.4313 25 6 -7.9322 -6.0275 -4.1568 26 6 -7.5616 -4.9496 -5.1788 27 8 -6.9128 -3.8653 -4.5114 28 6 -5.6965 -4.2283 -3.8549 29 7 0.0036 -2.4181 -0.4393 30 1 -0.4850 0.8401 0.0004 31 1 3.0475 -3.6630 0.2274 32 1 1.7952 -5.7877 -0.0431 33 1 -0.6275 -5.6892 -0.5718 34 1 -2.5373 -2.6607 -0.7151 35 1 -4.5144 -3.7531 -1.3189 36 1 -5.4281 -7.6092 -1.4161 37 1 -4.0630 -6.9618 -0.4752 38 1 -6.1417 -6.6904 0.6699 39 1 -5.9805 -6.9451 -4.1470 40 1 -6.9286 -7.2165 -2.6633 41 1 -8.3875 -6.8747 -4.6698 42 1 -8.6372 -5.6180 -3.4334 43 1 -6.8888 -5.3720 -5.9250 44 1 -8.4655 -4.5867 -5.6683 45 1 -5.2567 -3.3456 -3.3904 46 1 -4.9993 -4.6413 -4.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366557769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:02 Heat of formation + Delta-G solvation = -85.458796 kcal Electronic energy + Delta-G solvation = -29209.990273 eV Core-core repulsion = 25099.830768 eV Total energy + Delta-G solvation = -4110.159506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47454 -39.51456 -38.01604 -37.14540 -35.08922 -34.18894 -33.60243 -33.16336 -31.39791 -30.37129 -29.18059 -28.15998 -25.58348 -25.28537 -23.91993 -22.62652 -21.55926 -21.07819 -20.50961 -20.00238 -18.22729 -17.56338 -17.21612 -16.84999 -16.30873 -16.17910 -15.50015 -15.28778 -15.04012 -14.71848 -14.61935 -14.44005 -14.26330 -14.07787 -13.81246 -13.35153 -12.94360 -12.88487 -12.79482 -12.59260 -12.23001 -11.98405 -11.77038 -11.46689 -11.27519 -11.23477 -11.09426 -10.97652 -10.89455 -10.64277 -10.51509 -10.12845 -10.08538 -9.82181 -9.68864 -9.29185 -9.02900 -8.90255 -8.01769 -7.64591 -7.04010 -6.43083 -4.46521 2.68974 2.91209 2.97774 3.10677 3.13972 3.26866 3.63396 3.68759 3.96998 4.15236 4.35514 4.47009 4.52337 4.61651 4.66510 4.80750 4.88483 5.04713 5.14797 5.17645 5.26093 5.33575 5.43618 5.48351 5.56651 5.61338 5.71582 5.77817 5.88600 5.94098 6.10162 6.18493 6.45772 6.53755 6.75393 6.84339 6.96344 6.97158 7.13048 7.26159 7.46404 7.53792 7.64712 7.92890 8.09940 8.19594 8.45907 8.72937 8.91329 9.06040 10.07414 10.33214 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002708 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.588143 B =10338.605056 C =11432.395100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.085 0.915 9 C 0.283 3.717 10 C -0.292 4.292 11 C -0.049 4.049 12 C -0.313 4.313 13 C 0.376 3.624 14 N -0.658 5.658 15 C 0.708 3.292 16 O -0.573 6.573 17 N -0.738 5.738 18 C 0.178 3.822 19 H 0.101 0.899 20 C 0.062 3.938 21 O -0.567 6.567 22 C -0.126 4.126 23 H 0.096 0.904 24 C -0.114 4.114 25 C -0.154 4.154 26 C 0.057 3.943 27 O -0.381 6.381 28 C 0.065 3.935 29 N -0.512 5.512 30 H 0.271 0.729 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.404 0.596 35 H 0.398 0.602 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.376 0.624 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 -9.834 -5.240 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.150 4.150 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.157 3.843 10 C -0.315 4.315 11 C -0.074 4.074 12 C -0.338 4.338 13 C 0.141 3.859 14 N -0.305 5.305 15 C 0.408 3.592 16 O -0.450 6.450 17 N -0.394 5.394 18 C 0.072 3.928 19 H 0.119 0.881 20 C -0.017 4.017 21 O -0.372 6.372 22 C -0.145 4.145 23 H 0.114 0.886 24 C -0.152 4.152 25 C -0.191 4.191 26 C -0.019 4.019 27 O -0.299 6.299 28 C -0.012 4.012 29 N -0.231 5.231 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.239 0.761 35 H 0.232 0.768 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.223 0.777 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.807 -9.109 -6.020 20.042 hybrid contribution 0.407 -0.080 0.719 0.830 sum -16.400 -9.189 -5.300 19.532 Atomic orbital electron populations 1.70054 1.07295 1.27668 1.29752 1.26007 0.94832 1.00971 0.93228 0.86334 0.80571 0.80977 0.79010 1.19527 1.20247 1.18561 1.19540 0.94801 0.89436 1.43252 0.89688 1.18147 0.86386 0.92080 0.87724 1.21699 0.99695 0.93502 1.16597 1.20804 0.93873 0.96600 0.96116 1.21619 0.95969 0.97602 1.18617 1.18171 0.82700 0.91002 0.94071 1.42261 1.08966 1.14508 1.64753 1.15772 0.81440 0.83534 0.78437 1.90821 1.64246 1.33767 1.56206 1.45083 1.05629 1.18709 1.69946 1.20791 0.92383 0.85885 0.93784 0.88142 1.22685 0.92762 0.95061 0.91234 1.86458 1.65476 1.45857 1.39410 1.21987 0.96840 0.97226 0.98450 0.88566 1.21617 0.96800 0.97034 0.99780 1.22168 0.98244 0.99293 0.99436 1.22590 0.97370 0.88195 0.93787 1.87960 1.38078 1.33849 1.70036 1.22648 0.86054 0.98764 0.93695 1.67927 1.08651 1.25155 1.21366 0.91770 0.88294 0.88439 0.84939 0.76110 0.76761 0.92973 0.92578 0.77726 0.91588 0.90966 0.90869 0.90914 0.93227 0.89037 0.88558 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.01 11.56 55.55 0.64 -18.37 16 2 C 0.07 1.89 5.47 -17.35 -0.09 1.79 16 3 Si 0.91 18.67 29.57 -169.99 -5.03 13.64 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.44 -11.82 9.13 -37.74 -0.34 -12.17 16 8 H 0.09 2.15 7.86 -52.49 -0.41 1.74 16 9 C 0.28 7.90 6.52 -85.00 -0.55 7.34 16 10 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 11 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 12 C -0.31 -7.76 8.83 -38.89 -0.34 -8.11 16 13 C 0.38 9.45 7.51 -154.99 -1.16 8.29 16 14 N -0.66 -13.47 5.42 -15.79 -0.09 -13.56 16 15 C 0.71 13.01 8.37 -86.92 -0.73 12.28 16 16 O -0.57 -12.20 12.79 5.30 0.07 -12.13 16 17 N -0.74 -9.89 4.32 -58.68 -0.25 -10.15 16 18 C 0.18 2.01 1.95 -67.93 -0.13 1.88 16 19 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 20 C 0.06 0.64 6.46 37.16 0.24 0.88 16 21 O -0.57 -5.60 12.70 -35.23 -0.45 -6.05 16 22 C -0.13 -1.19 1.87 -90.48 -0.17 -1.36 16 23 H 0.10 1.01 7.48 -51.93 -0.39 0.62 16 24 C -0.11 -0.88 4.94 -26.55 -0.13 -1.02 16 25 C -0.15 -1.09 6.14 -26.59 -0.16 -1.25 16 26 C 0.06 0.47 6.84 37.20 0.25 0.72 16 27 O -0.38 -4.27 10.77 -35.23 -0.38 -4.65 16 28 C 0.07 0.69 5.89 37.21 0.22 0.91 16 29 N -0.51 -14.14 8.00 -10.26 -0.08 -14.22 16 30 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 31 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.13 3.24 5.30 -52.53 -0.28 2.96 16 34 H 0.40 7.50 8.84 -40.82 -0.36 7.14 16 35 H 0.40 4.70 8.23 -40.82 -0.34 4.36 16 36 H 0.05 0.43 6.80 -51.93 -0.35 0.07 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.38 2.28 9.12 45.56 0.42 2.70 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.51 6.79 -51.93 -0.35 0.16 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 1.05 7.34 -51.92 -0.38 0.67 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.04 373.09 -9.61 -42.65 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -5.78 Total: 16.43 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.89 Total: 0.77 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.22 Total: -56.29 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.76 Total: -22.83 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.04 -9.61 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366557769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.805 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds