Wall clock time and date at job start Tue Mar 31 2020 18:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47349 * 274.99333 * 3 2 1 5 5 H 1.48499 * 109.46930 * 34.99043 * 3 2 1 6 6 H 1.48494 * 109.46956 * 154.98973 * 3 2 1 7 7 C 1.40025 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99835 * 187.06732 * 7 2 1 9 9 C 1.41328 * 120.00316 * 7.06351 * 7 2 1 10 10 C 1.40608 * 119.79263 * 187.12481 * 9 7 2 11 11 C 1.38307 * 119.13586 * 180.02562 * 10 9 7 12 12 C 1.38695 * 118.66866 * 359.97438 * 11 10 9 13 13 C 1.39644 * 119.49388 * 359.97438 * 12 11 10 14 14 N 1.39244 * 119.57326 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00106 * 341.78402 * 14 13 12 16 16 O 1.21578 * 119.99799 * 353.90131 * 15 14 13 17 17 N 1.34769 * 120.00037 * 173.90191 * 15 14 13 18 18 C 1.46508 * 119.99960 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.47172 * 325.00558 * 18 17 15 20 20 C 1.52996 * 109.46566 * 84.99930 * 18 17 15 21 21 O 1.42909 * 109.47212 * 64.06053 * 20 18 17 22 22 C 1.52997 * 109.47357 * 204.99853 * 18 17 15 23 23 H 1.08995 * 109.52545 * 296.86814 * 22 18 17 24 24 C 1.53176 * 109.52164 * 176.73605 * 22 18 17 25 25 C 1.53177 * 109.03396 * 183.11512 * 24 22 18 26 26 C 1.53091 * 109.16213 * 56.98427 * 25 24 22 27 27 O 1.42898 * 109.41509 * 302.38753 * 26 25 24 28 28 C 1.42902 * 114.09672 * 61.16143 * 27 26 25 29 29 N 1.31926 * 120.85201 * 0.25645 * 13 12 11 30 30 H 0.97001 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.42936 * 359.97438 * 10 9 7 32 32 H 1.07992 * 120.66901 * 180.02562 * 11 10 9 33 33 H 1.07997 * 120.24924 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00361 * 161.50882 * 14 13 12 35 35 H 0.97000 * 120.00728 * 0.02562 * 17 15 14 36 36 H 1.09000 * 109.46928 * 184.05131 * 20 18 17 37 37 H 1.08992 * 109.47951 * 304.05833 * 20 18 17 38 38 H 0.96696 * 113.99775 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.54690 * 302.98194 * 24 22 18 40 40 H 1.08997 * 109.53962 * 63.25435 * 24 22 18 41 41 H 1.09006 * 109.52182 * 176.88724 * 25 24 22 42 42 H 1.08995 * 109.52546 * 297.01218 * 25 24 22 43 43 H 1.09000 * 109.48596 * 62.37555 * 26 25 24 44 44 H 1.09007 * 109.48095 * 182.39418 * 26 25 24 45 45 H 1.09008 * 109.48022 * 178.85900 * 28 27 26 46 46 H 1.09000 * 109.47963 * 58.82479 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4956 2.6199 0.8029 6 1 3.5877 1.4120 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0813 -1.2163 0.1145 9 6 1.3089 -2.4319 -0.1516 10 6 1.9921 -3.6517 -0.0019 11 6 1.2953 -4.8368 -0.1531 12 6 -0.0588 -4.7795 -0.4479 13 6 -0.6810 -3.5367 -0.5832 14 7 -2.0402 -3.4772 -0.8796 15 6 -2.6665 -4.5561 -1.3900 16 8 -2.0256 -5.5432 -1.6952 17 7 -4.0030 -4.5407 -1.5620 18 6 -4.6837 -5.7132 -2.1173 19 1 -4.0418 -6.1886 -2.8589 20 6 -4.9870 -6.7064 -0.9937 21 8 -5.9038 -6.1155 -0.0703 22 6 -5.9922 -5.2773 -2.7797 23 1 -6.6570 -4.8522 -2.0279 24 6 -6.6647 -6.4895 -3.4313 25 6 -7.9322 -6.0275 -4.1568 26 6 -7.5616 -4.9496 -5.1788 27 8 -6.9128 -3.8653 -4.5114 28 6 -5.6965 -4.2283 -3.8549 29 7 0.0036 -2.4181 -0.4393 30 1 -0.4850 0.8401 0.0004 31 1 3.0475 -3.6630 0.2274 32 1 1.7952 -5.7877 -0.0431 33 1 -0.6275 -5.6892 -0.5718 34 1 -2.5373 -2.6607 -0.7151 35 1 -4.5144 -3.7531 -1.3189 36 1 -5.4281 -7.6092 -1.4161 37 1 -4.0630 -6.9618 -0.4752 38 1 -6.1417 -6.6904 0.6699 39 1 -5.9805 -6.9451 -4.1470 40 1 -6.9286 -7.2165 -2.6633 41 1 -8.3875 -6.8747 -4.6698 42 1 -8.6372 -5.6180 -3.4334 43 1 -6.8888 -5.3720 -5.9250 44 1 -8.4655 -4.5867 -5.6683 45 1 -5.2567 -3.3456 -3.3904 46 1 -4.9993 -4.6413 -4.5838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366557769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:01 Heat of formation + Delta-G solvation = -109.970629 kcal Electronic energy + Delta-G solvation = -29211.053186 eV Core-core repulsion = 25099.830768 eV Total energy + Delta-G solvation = -4111.222418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79712 -40.61152 -39.63721 -38.17987 -36.16540 -35.83767 -35.12876 -34.35439 -32.40968 -32.26512 -30.85539 -29.20906 -27.38290 -26.17366 -24.75696 -24.02674 -23.48158 -22.29001 -21.67746 -21.12453 -19.74716 -19.10198 -18.34899 -18.25039 -17.24133 -17.13446 -16.86570 -16.64551 -16.31315 -16.22938 -15.96141 -15.65498 -15.48048 -15.22774 -14.89248 -14.69230 -14.53244 -14.23090 -13.82429 -13.61796 -13.53247 -13.40829 -12.98962 -12.85919 -12.67855 -12.59752 -12.56013 -12.11324 -12.00839 -11.83557 -11.69261 -11.60666 -11.25491 -11.08594 -10.91869 -10.75091 -10.48053 -10.11479 -9.96841 -9.61927 -8.93078 -8.33522 -6.48248 0.83202 1.12958 1.42927 1.52039 1.55593 1.57220 2.11305 2.24786 2.88653 2.89038 3.11346 3.38775 3.58827 3.77507 3.85263 3.93733 4.01605 4.17738 4.28499 4.32875 4.35389 4.41371 4.53323 4.56231 4.64784 4.67144 4.76152 4.80466 4.89278 4.91859 4.94162 4.99083 5.04795 5.12184 5.20916 5.24906 5.39018 5.48655 5.59774 5.70285 5.87386 5.98551 6.21709 6.23933 6.30198 6.75224 6.87339 6.89920 7.02505 7.49131 8.11352 8.45339 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002708 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.588143 B =10338.605056 C =11432.395100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.469 4.469 8 H 0.091 0.909 9 C 0.249 3.751 10 C -0.311 4.311 11 C -0.047 4.047 12 C -0.326 4.326 13 C 0.367 3.633 14 N -0.658 5.658 15 C 0.709 3.291 16 O -0.601 6.601 17 N -0.717 5.717 18 C 0.173 3.827 19 H 0.091 0.909 20 C 0.069 3.931 21 O -0.577 6.577 22 C -0.110 4.110 23 H 0.091 0.909 24 C -0.114 4.114 25 C -0.148 4.148 26 C 0.048 3.952 27 O -0.402 6.402 28 C 0.064 3.936 29 N -0.539 5.539 30 H 0.280 0.720 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.411 0.589 35 H 0.408 0.592 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.394 0.606 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 -10.145 -5.521 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.500 4.500 8 H 0.109 0.891 9 C 0.122 3.878 10 C -0.334 4.334 11 C -0.072 4.072 12 C -0.350 4.350 13 C 0.131 3.869 14 N -0.305 5.305 15 C 0.409 3.591 16 O -0.481 6.481 17 N -0.372 5.372 18 C 0.068 3.932 19 H 0.109 0.891 20 C -0.010 4.010 21 O -0.385 6.385 22 C -0.130 4.130 23 H 0.109 0.891 24 C -0.152 4.152 25 C -0.186 4.186 26 C -0.028 4.028 27 O -0.321 6.321 28 C -0.013 4.013 29 N -0.259 5.259 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.247 0.753 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.063 -9.452 -6.296 21.337 hybrid contribution 0.648 -0.065 0.774 1.011 sum -17.415 -9.517 -5.523 20.600 Atomic orbital electron populations 1.70127 1.08868 1.29211 1.29619 1.26932 0.95740 1.04392 0.92257 0.85116 0.79199 0.75794 0.79083 1.19206 1.19145 1.17838 1.19916 0.95377 0.90353 1.44378 0.89060 1.18667 0.87138 0.93470 0.88498 1.21881 1.00524 0.93431 1.17521 1.21174 0.93722 0.97637 0.94653 1.21835 0.96587 0.97669 1.18942 1.18504 0.84292 0.90788 0.93338 1.42203 1.07642 1.15565 1.65085 1.15869 0.82672 0.82512 0.78037 1.90781 1.65339 1.34540 1.57437 1.45002 1.03791 1.19879 1.68559 1.21028 0.92774 0.85212 0.94219 0.89149 1.22539 0.92155 0.95577 0.90757 1.86415 1.65035 1.46858 1.40186 1.21846 0.95525 0.97825 0.97779 0.89105 1.21654 0.97069 0.96228 1.00205 1.22138 0.97763 0.99580 0.99074 1.22836 0.97805 0.88020 0.94164 1.87930 1.38174 1.35559 1.70408 1.22606 0.86095 0.98650 0.93920 1.67949 1.09018 1.26243 1.22675 0.90948 0.86896 0.85145 0.84584 0.75316 0.75608 0.90013 0.95141 0.75649 0.91120 0.89729 0.88662 0.91243 0.92741 0.87686 0.89581 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.13 11.56 21.84 0.25 -39.88 16 2 C 0.03 1.46 5.47 85.29 0.47 1.93 16 3 Si 0.99 38.14 29.57 68.60 2.03 40.17 16 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.47 -25.72 9.13 23.46 0.21 -25.51 16 8 H 0.09 4.68 7.86 -2.91 -0.02 4.66 16 9 C 0.25 14.22 6.52 40.20 0.26 14.49 16 10 C -0.31 -16.08 9.83 22.86 0.22 -15.85 16 11 C -0.05 -2.28 10.15 22.40 0.23 -2.05 16 12 C -0.33 -16.34 8.83 22.72 0.20 -16.14 16 13 C 0.37 18.89 7.51 133.25 1.00 19.90 16 14 N -0.66 -27.51 5.42 -322.14 -1.75 -29.25 16 15 C 0.71 26.35 8.37 179.05 1.50 27.84 16 16 O -0.60 -25.91 12.79 -3.96 -0.05 -25.96 16 17 N -0.72 -19.11 4.32 -457.83 -1.98 -21.09 16 18 C 0.17 3.76 1.95 44.99 0.09 3.85 16 19 H 0.09 2.21 7.58 -2.39 -0.02 2.19 16 20 C 0.07 1.33 6.46 71.98 0.46 1.79 16 21 O -0.58 -10.33 12.70 -148.98 -1.89 -12.22 16 22 C -0.11 -1.95 1.87 -10.70 -0.02 -1.97 16 23 H 0.09 1.76 7.48 -2.39 -0.02 1.74 16 24 C -0.11 -1.48 4.94 30.71 0.15 -1.33 16 25 C -0.15 -1.72 6.14 30.68 0.19 -1.53 16 26 C 0.05 0.70 6.84 72.01 0.49 1.19 16 27 O -0.40 -8.67 10.77 -148.98 -1.60 -10.27 16 28 C 0.06 1.33 5.89 72.01 0.42 1.75 16 29 N -0.54 -30.60 8.00 -186.38 -1.49 -32.10 16 30 H 0.28 13.34 8.29 -92.71 -0.77 12.57 16 31 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 32 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 33 H 0.14 6.72 5.30 -3.56 -0.02 6.70 16 34 H 0.41 15.65 8.84 -92.71 -0.82 14.83 16 35 H 0.41 9.49 8.23 -92.71 -0.76 8.73 16 36 H 0.08 1.11 6.80 -2.39 -0.02 1.10 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.39 3.94 9.12 -74.06 -0.68 3.27 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.93 6.79 -2.39 -0.02 0.91 16 41 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.09 1.89 7.34 -2.38 -0.02 1.88 16 46 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -72.48 373.09 -1.81 -74.30 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -1.22 Total: 47.96 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.88 Total: 8.34 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -4.96 Total: -122.32 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -3.55 Total: -48.46 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -72.48 -1.81 -74.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366557769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.674 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds