Wall clock time and date at job start Tue Mar 31 2020 18:47:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30670 * 1
3 3 Si 1.86809 * 120.00076 * 2 1
4 4 H 1.48495 * 109.47230 * 240.00039 * 3 2 1
5 5 H 1.48496 * 109.47100 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46685 * 120.00046 * 3 2 1
7 7 C 1.40043 * 120.00311 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00752 * 180.02562 * 7 2 1
9 9 C 1.46379 * 119.99813 * 359.97438 * 7 2 1
10 10 O 1.21692 * 119.99894 * 10.35859 * 9 7 2
11 11 N 1.34786 * 120.00078 * 190.35843 * 9 7 2
12 12 C 1.46921 * 120.62649 * 3.48306 * 11 9 7
13 13 C 1.53190 * 108.89202 * 233.68014 * 12 11 9
14 14 C 1.53048 * 109.31396 * 305.30086 * 13 12 11
15 15 C 1.53036 * 109.53923 * 61.36493 * 14 13 12
16 16 C 1.47202 * 120.81053 * 183.62839 * 11 9 7
17 17 H 1.08992 * 109.56127 * 246.15250 * 16 11 9
18 18 C 1.50697 * 109.65357 * 6.46721 * 16 11 9
19 19 N 1.30272 * 126.28629 * 57.77297 * 18 16 11
20 20 N 1.28669 * 109.38072 * 179.97438 * 19 18 16
21 21 C 1.30273 * 109.38147 * 359.97438 * 20 19 18
22 22 C 1.50704 * 126.27953 * 180.02562 * 21 20 19
23 23 C 1.53172 * 109.54584 * 59.53412 * 22 21 20
24 24 C 1.53092 * 109.16228 * 183.15603 * 23 22 21
25 25 O 1.42902 * 109.42028 * 57.60301 * 24 23 22
26 26 C 1.42903 * 114.09593 * 298.84586 * 25 24 23
27 27 C 1.53094 * 109.41597 * 61.15665 * 26 25 24
28 28 O 1.34365 * 107.43591 * 359.76405 * 21 20 19
29 29 H 0.96998 * 119.99864 * 359.97438 * 1 2 3
30 30 H 1.09004 * 109.58347 * 113.82831 * 12 11 9
31 31 H 1.08996 * 109.59065 * 353.54152 * 12 11 9
32 32 H 1.09004 * 109.50186 * 65.24987 * 13 12 11
33 33 H 1.09004 * 109.50186 * 185.31783 * 13 12 11
34 34 H 1.09006 * 109.45808 * 181.38727 * 14 13 12
35 35 H 1.08998 * 109.45797 * 301.35117 * 14 13 12
36 36 H 1.08999 * 109.50063 * 58.58406 * 15 14 13
37 37 H 1.08997 * 109.49641 * 178.65309 * 15 14 13
38 38 H 1.09002 * 109.53916 * 179.80184 * 22 21 20
39 39 H 1.09006 * 109.51953 * 303.05219 * 23 22 21
40 40 H 1.08993 * 109.52670 * 63.24275 * 23 22 21
41 41 H 1.08997 * 109.47503 * 297.62066 * 24 23 22
42 42 H 1.08997 * 109.48388 * 177.58877 * 24 23 22
43 43 H 1.08994 * 109.48395 * 301.17277 * 26 25 24
44 44 H 1.09005 * 109.48789 * 181.14505 * 26 25 24
45 45 H 1.08998 * 109.51933 * 182.48507 * 27 26 25
46 46 H 1.09002 * 109.57539 * 62.32639 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 3.0945 1.6965 -1.2125
5 1 1.2758 2.7465 0.0006
6 1 3.0945 1.6964 1.2125
7 6 2.0070 -1.2128 -0.0005
8 1 3.0870 -1.2129 -0.0001
9 6 1.2751 -2.4805 -0.0005
10 8 0.0730 -2.4890 -0.1896
11 7 1.9327 -3.6383 0.2088
12 6 3.3699 -3.6382 0.5138
13 6 4.0866 -4.5640 -0.4741
14 6 3.4379 -5.9495 -0.4314
15 6 1.9698 -5.8404 -0.8498
16 6 1.2291 -4.9291 0.1341
17 1 1.2122 -5.3931 1.1201
18 6 -0.1826 -4.7098 -0.3454
19 7 -0.5379 -4.1457 -1.4647
20 7 -1.8219 -4.1281 -1.5453
21 6 -2.3295 -4.6809 -0.4804
22 6 -3.7957 -4.8608 -0.1818
23 6 -4.4423 -5.7090 -1.2812
24 6 -5.9451 -5.8203 -1.0115
25 8 -6.5155 -4.5113 -0.9529
26 6 -5.9828 -3.6888 0.0872
27 6 -4.4814 -3.4918 -0.1384
28 8 -1.3059 -5.0664 0.3000
29 1 -0.4850 0.8400 0.0004
30 1 3.5275 -3.9971 1.5310
31 1 3.7637 -2.6264 0.4181
32 1 4.0047 -4.1548 -1.4811
33 1 5.1382 -4.6455 -0.1990
34 1 3.9618 -6.6170 -1.1156
35 1 3.4981 -6.3475 0.5815
36 1 1.9078 -5.4191 -1.8532
37 1 1.5149 -6.8308 -0.8422
38 1 -3.9132 -5.3582 0.7810
39 1 -4.2801 -5.2353 -2.2494
40 1 -3.9977 -6.7042 -1.2824
41 1 -6.1072 -6.3303 -0.0620
42 1 -6.4175 -6.3870 -1.8139
43 1 -6.1454 -4.1709 1.0511
44 1 -6.4822 -2.7200 0.0764
45 1 -4.0649 -2.9014 0.6777
46 1 -4.3191 -2.9730 -1.0831
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001412124508.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:47:36
Heat of formation + Delta-G solvation = -27.893759 kcal
Electronic energy + Delta-G solvation = -30576.748669 eV
Core-core repulsion = 26469.085370 eV
Total energy + Delta-G solvation = -4107.663298 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.21936 -39.32882 -38.83549 -35.90715 -35.10830 -34.51518 -32.75797 -31.90689
-31.64321 -31.15326 -28.88572 -26.58750 -25.55171 -24.53802 -23.57396 -23.37077
-22.16150 -21.47253 -20.55803 -20.03775 -18.83541 -17.03509 -16.57321 -16.47118
-16.07292 -15.96543 -15.66231 -14.89199 -14.80676 -14.70687 -14.37635 -14.07303
-13.84922 -13.76102 -13.46102 -13.33648 -13.04528 -12.57310 -12.43386 -12.26831
-11.89522 -11.51423 -11.38017 -11.26722 -11.17959 -11.08615 -10.98707 -10.88007
-10.83461 -10.72734 -10.54613 -10.47810 -10.37748 -10.29074 -9.93363 -9.82734
-9.62932 -8.98394 -8.82426 -7.45382 -7.16017 -6.21086 -4.69326 2.08706
2.93463 3.12247 3.17855 3.19101 3.49623 3.82565 4.02130 4.30431
4.41044 4.53699 4.67429 4.75242 4.94137 5.04092 5.08172 5.11082
5.16732 5.22314 5.29966 5.33830 5.45788 5.51483 5.56494 5.60906
5.68440 5.69977 5.85490 5.86699 5.93278 6.00337 6.08380 6.12948
6.15211 6.25050 6.29993 6.39559 6.40938 6.45999 6.57964 6.60090
6.72839 7.12487 7.35517 7.40878 7.97210 8.21499 8.96665 9.26781
9.40423 10.47572 10.67105
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011170 B = 0.004311 C = 0.003229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2506.028956 B = 6493.086557 C = 8668.014940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.764 5.764
2 C 0.090 3.910
3 Si 0.907 3.093
4 H -0.267 1.267
5 H -0.281 1.281
6 H -0.268 1.268
7 C -0.539 4.539
8 H 0.073 0.927
9 C 0.559 3.441
10 O -0.549 6.549
11 N -0.636 5.636
12 C 0.125 3.875
13 C -0.139 4.139
14 C -0.111 4.111
15 C -0.123 4.123
16 C 0.250 3.750
17 H 0.076 0.924
18 C 0.203 3.797
19 N -0.241 5.241
20 N -0.262 5.262
21 C 0.122 3.878
22 C 0.023 3.977
23 C -0.147 4.147
24 C 0.065 3.935
25 O -0.382 6.382
26 C 0.065 3.935
27 C -0.147 4.147
28 O -0.237 6.237
29 H 0.269 0.731
30 H 0.045 0.955
31 H 0.099 0.901
32 H 0.068 0.932
33 H 0.066 0.934
34 H 0.063 0.937
35 H 0.061 0.939
36 H 0.079 0.921
37 H 0.066 0.934
38 H 0.090 0.910
39 H 0.088 0.912
40 H 0.075 0.925
41 H 0.051 0.949
42 H 0.097 0.903
43 H 0.051 0.949
44 H 0.099 0.901
45 H 0.081 0.919
46 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.611 -12.365 2.313 12.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.392 5.392
2 C -0.131 4.131
3 Si 0.732 3.268
4 H -0.192 1.192
5 H -0.206 1.206
6 H -0.193 1.193
7 C -0.576 4.576
8 H 0.091 0.909
9 C 0.365 3.635
10 O -0.428 6.428
11 N -0.377 5.377
12 C 0.001 3.999
13 C -0.178 4.178
14 C -0.149 4.149
15 C -0.162 4.162
16 C 0.144 3.856
17 H 0.094 0.906
18 C -0.006 4.006
19 N -0.090 5.090
20 N -0.111 5.111
21 C -0.088 4.088
22 C 0.003 3.997
23 C -0.185 4.185
24 C -0.012 4.012
25 O -0.301 6.301
26 C -0.011 4.011
27 C -0.185 4.185
28 O -0.118 6.118
29 H 0.080 0.920
30 H 0.064 0.936
31 H 0.117 0.883
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.082 0.918
35 H 0.080 0.920
36 H 0.098 0.902
37 H 0.085 0.915
38 H 0.108 0.892
39 H 0.106 0.894
40 H 0.094 0.906
41 H 0.069 0.931
42 H 0.115 0.885
43 H 0.069 0.931
44 H 0.117 0.883
45 H 0.100 0.900
46 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -3.512 -11.569 0.957 12.128
hybrid contribution 0.869 0.352 1.537 1.800
sum -2.643 -11.217 2.494 11.791
Atomic orbital electron populations
1.69977 1.07037 1.27496 1.34735 1.25693 0.94611 1.00241 0.92541
0.86437 0.79849 0.81089 0.79443 1.19162 1.20584 1.19299 1.20825
0.93402 0.88803 1.54537 0.90866 1.18294 0.87013 0.82006 0.76153
1.90659 1.15093 1.83475 1.53616 1.48509 1.08508 1.03260 1.77445
1.21486 0.81110 1.01309 0.96000 1.21999 0.98831 0.95518 1.01405
1.21453 0.94675 0.97534 1.01233 1.21927 0.95656 0.98416 1.00193
1.18904 0.81005 0.88065 0.97675 0.90619 1.26921 0.89162 0.94776
0.89699 1.74275 1.03251 1.12276 1.19225 1.74093 1.02049 1.14667
1.20321 1.27047 0.91842 1.01194 0.88698 1.19417 0.82200 0.98067
1.00005 1.22275 0.95963 1.00442 0.99857 1.22562 0.92237 0.84821
1.01556 1.87936 1.63004 1.24878 1.54288 1.22608 0.92930 0.95509
0.90076 1.22257 0.95178 0.95793 1.05322 1.84569 1.15581 1.64520
1.47110 0.92018 0.93649 0.88284 0.91322 0.91567 0.91832 0.92028
0.90215 0.91550 0.89197 0.89375 0.90600 0.93104 0.88487 0.93089
0.88288 0.89997 0.89268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -22.82 11.88 55.55 0.66 -22.16 16
2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16
3 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16
4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
7 C -0.54 -14.82 8.81 -35.63 -0.31 -15.14 16
8 H 0.07 1.82 5.73 -52.49 -0.30 1.52 16
9 C 0.56 15.50 7.41 -12.98 -0.10 15.40 16
10 O -0.55 -16.97 10.42 5.20 0.05 -16.91 16
11 N -0.64 -14.01 2.98 -167.97 -0.50 -14.51 16
12 C 0.12 2.16 6.33 -3.71 -0.02 2.14 16
13 C -0.14 -1.94 6.08 -26.61 -0.16 -2.10 16
14 C -0.11 -1.41 5.88 -26.69 -0.16 -1.56 16
15 C -0.12 -1.91 5.35 -26.61 -0.14 -2.06 16
16 C 0.25 4.88 3.43 -68.60 -0.23 4.64 16
17 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
18 C 0.20 4.65 4.98 -12.94 -0.06 4.59 16
19 N -0.24 -6.16 9.74 32.55 0.32 -5.85 16
20 N -0.26 -6.32 12.19 32.55 0.40 -5.93 16
21 C 0.12 2.53 7.00 -12.94 -0.09 2.44 16
22 C 0.02 0.36 2.75 -91.59 -0.25 0.10 16
23 C -0.15 -1.86 5.41 -26.59 -0.14 -2.01 16
24 C 0.07 0.68 6.84 37.21 0.25 0.94 16
25 O -0.38 -4.93 10.77 -35.23 -0.38 -5.30 16
26 C 0.07 0.78 6.84 37.21 0.25 1.04 16
27 C -0.15 -2.25 5.41 -26.59 -0.14 -2.39 16
28 O -0.24 -5.18 10.87 5.37 0.06 -5.13 16
29 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16
30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.10 1.83 5.33 -51.93 -0.28 1.55 16
32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16
39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16
43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16
45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
46 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16
LS Contribution 365.53 15.07 5.51 5.51
Total: -1.00 -36.46 365.53 -7.22 -43.68
By element:
Atomic # 1 Polarization: 10.07 SS G_CDS: -6.90 Total: 3.17 kcal
Atomic # 6 Polarization: 9.80 SS G_CDS: -1.41 Total: 8.39 kcal
Atomic # 7 Polarization: -49.32 SS G_CDS: 0.87 Total: -48.45 kcal
Atomic # 8 Polarization: -27.08 SS G_CDS: -0.27 Total: -27.34 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -36.46 -7.22 -43.68 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001412124508.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.787 kcal
(2) G-P(sol) polarization free energy of solvation -36.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds